Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3648 and Ac3H11_3453 are separated by 30 nucleotides Ac3H11_3453 and Ac3H11_3454 are separated by 58 nucleotides Ac3H11_3454 and Ac3H11_3455 are separated by 41 nucleotides
Ac3H11_3648 - tRNA-Gln-TTG, at 2,836 to 2,909
_3648
Ac3H11_3453 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 2,940 to 3,779
_3453
Ac3H11_3454 - Outer membrane lipoprotein LolB, at 3,838 to 4,326
_3454
Ac3H11_3455 - FOG: TPR repeat, at 4,368 to 6,128
_3455
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.819 kb on + strand at 3.820 kb on - strand at 3.820 kb on - strand at 3.820 kb on - strand at 4.506 kb on + strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.507 kb on - strand at 4.513 kb on - strand at 4.513 kb on - strand at 4.531 kb on + strand at 4.531 kb on + strand at 4.531 kb on + strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.532 kb on - strand at 4.694 kb on - strand, within Ac3H11_3455 at 4.698 kb on + strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.699 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.709 kb on - strand, within Ac3H11_3455 at 4.721 kb on - strand, within Ac3H11_3455 at 4.721 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.808 kb on - strand, within Ac3H11_3455 at 4.862 kb on - strand, within Ac3H11_3455 at 4.862 kb on - strand, within Ac3H11_3455 at 4.862 kb on - strand, within Ac3H11_3455 at 4.874 kb on - strand, within Ac3H11_3455 at 4.874 kb on - strand, within Ac3H11_3455 at 4.874 kb on - strand, within Ac3H11_3455 at 4.874 kb on - strand, within Ac3H11_3455 at 5.108 kb on - strand, within Ac3H11_3455 at 5.108 kb on - strand, within Ac3H11_3455 at 5.108 kb on - strand, within Ac3H11_3455 at 5.117 kb on - strand, within Ac3H11_3455 at 5.151 kb on - strand, within Ac3H11_3455
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,819 + +0.9 3,820 - -2.7 3,820 - -0.6 3,820 - -1.8 4,506 + +1.3 4,507 - +1.5 4,507 - +0.3 4,507 - +0.8 4,507 - +1.4 4,513 - -0.4 4,513 - -0.7 4,531 + +0.6 4,531 + +1.9 4,531 + +1.0 4,532 - +1.6 4,532 - +1.5 4,532 - +0.8 4,532 - +0.2 4,532 - +0.5 4,532 - +0.8 4,694 - Ac3H11_3455 0.19 +0.5 4,698 + Ac3H11_3455 0.19 +0.9 4,699 - Ac3H11_3455 0.19 -1.0 4,699 - Ac3H11_3455 0.19 +1.6 4,699 - Ac3H11_3455 0.19 +1.4 4,709 - Ac3H11_3455 0.19 +0.2 4,709 - Ac3H11_3455 0.19 +1.2 4,709 - Ac3H11_3455 0.19 +1.2 4,721 - Ac3H11_3455 0.20 +0.5 4,721 - Ac3H11_3455 0.20 +0.8 4,808 - Ac3H11_3455 0.25 +0.2 4,808 - Ac3H11_3455 0.25 +0.5 4,808 - Ac3H11_3455 0.25 +0.1 4,808 - Ac3H11_3455 0.25 +0.1 4,808 - Ac3H11_3455 0.25 +0.8 4,862 - Ac3H11_3455 0.28 +0.4 4,862 - Ac3H11_3455 0.28 -0.1 4,862 - Ac3H11_3455 0.28 +1.2 4,874 - Ac3H11_3455 0.29 +1.5 4,874 - Ac3H11_3455 0.29 +0.2 4,874 - Ac3H11_3455 0.29 -0.5 4,874 - Ac3H11_3455 0.29 +0.4 5,108 - Ac3H11_3455 0.42 +0.6 5,108 - Ac3H11_3455 0.42 +0.4 5,108 - Ac3H11_3455 0.42 -0.6 5,117 - Ac3H11_3455 0.43 +1.4 5,151 - Ac3H11_3455 0.44 +0.3
Or see this region's nucleotide sequence