Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3369 and Ac3H11_3370 are separated by 136 nucleotides Ac3H11_3370 and Ac3H11_3371 are separated by 49 nucleotides Ac3H11_3371 and Ac3H11_3372 are separated by 89 nucleotides Ac3H11_3372 and Ac3H11_3373 are separated by 54 nucleotides
Ac3H11_3369 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 52,167 to 53,084
_3369
Ac3H11_3370 - FIG00933367: hypothetical protein, at 53,221 to 53,640
_3370
Ac3H11_3371 - DNA repair protein RadA, at 53,690 to 55,150
_3371
Ac3H11_3372 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 55,240 to 56,073
_3372
Ac3H11_3373 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 56,128 to 57,105
_3373
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.339 kb on + strand, within Ac3H11_3370 at 53.339 kb on + strand, within Ac3H11_3370 at 53.340 kb on - strand, within Ac3H11_3370 at 53.340 kb on - strand, within Ac3H11_3370 at 53.462 kb on + strand, within Ac3H11_3370 at 53.462 kb on + strand, within Ac3H11_3370 at 53.463 kb on - strand, within Ac3H11_3370 at 53.463 kb on - strand, within Ac3H11_3370 at 53.463 kb on - strand, within Ac3H11_3370 at 53.463 kb on - strand, within Ac3H11_3370 at 53.463 kb on - strand, within Ac3H11_3370 at 53.580 kb on + strand, within Ac3H11_3370 at 53.581 kb on - strand, within Ac3H11_3370 at 53.625 kb on + strand at 53.625 kb on + strand at 53.626 kb on - strand at 53.640 kb on + strand at 53.640 kb on + strand at 53.640 kb on + strand at 53.641 kb on - strand at 53.656 kb on + strand at 53.657 kb on - strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.691 kb on + strand at 53.692 kb on - strand at 53.692 kb on - strand at 53.692 kb on - strand at 53.692 kb on - strand at 53.692 kb on - strand at 53.692 kb on - strand at 53.692 kb on - strand at 53.692 kb on - strand at 53.692 kb on - strand at 53.929 kb on + strand, within Ac3H11_3371 at 53.929 kb on + strand, within Ac3H11_3371 at 53.929 kb on + strand, within Ac3H11_3371 at 54.345 kb on + strand, within Ac3H11_3371 at 54.345 kb on + strand, within Ac3H11_3371 at 54.345 kb on + strand, within Ac3H11_3371 at 54.346 kb on - strand, within Ac3H11_3371 at 54.346 kb on - strand, within Ac3H11_3371 at 54.522 kb on + strand, within Ac3H11_3371 at 54.522 kb on + strand, within Ac3H11_3371 at 54.522 kb on + strand, within Ac3H11_3371 at 54.522 kb on + strand, within Ac3H11_3371 at 54.523 kb on - strand, within Ac3H11_3371 at 54.523 kb on - strand, within Ac3H11_3371 at 54.690 kb on + strand, within Ac3H11_3371 at 54.690 kb on + strand, within Ac3H11_3371 at 54.691 kb on - strand, within Ac3H11_3371 at 54.691 kb on - strand, within Ac3H11_3371 at 54.691 kb on - strand, within Ac3H11_3371 at 54.912 kb on + strand, within Ac3H11_3371 at 55.111 kb on + strand at 55.111 kb on + strand at 55.111 kb on + strand at 55.113 kb on + strand at 55.113 kb on + strand at 55.114 kb on - strand at 55.153 kb on + strand at 55.154 kb on - strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.164 kb on + strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.165 kb on - strand at 55.166 kb on + strand at 55.166 kb on + strand at 55.166 kb on + strand at 55.166 kb on + strand at 55.166 kb on + strand at 55.167 kb on - strand at 55.167 kb on - strand at 55.167 kb on - strand at 55.167 kb on - strand at 55.188 kb on + strand at 55.324 kb on + strand, within Ac3H11_3372 at 55.324 kb on + strand, within Ac3H11_3372 at 55.324 kb on + strand, within Ac3H11_3372 at 55.325 kb on - strand at 55.355 kb on - strand, within Ac3H11_3372 at 55.519 kb on + strand, within Ac3H11_3372 at 55.519 kb on + strand, within Ac3H11_3372 at 55.604 kb on - strand, within Ac3H11_3372 at 55.675 kb on + strand, within Ac3H11_3372 at 55.675 kb on + strand, within Ac3H11_3372 at 55.675 kb on + strand, within Ac3H11_3372 at 56.068 kb on + strand at 56.069 kb on - strand at 56.071 kb on + strand at 56.071 kb on + strand at 56.102 kb on + strand at 56.102 kb on + strand at 56.102 kb on + strand at 56.102 kb on + strand at 56.102 kb on + strand at 56.102 kb on + strand at 56.102 kb on + strand at 56.102 kb on + strand at 56.102 kb on + strand at 56.103 kb on - strand at 56.103 kb on - strand at 56.103 kb on - strand at 56.103 kb on - strand at 56.103 kb on - strand at 56.103 kb on - strand at 56.103 kb on - strand at 56.139 kb on + strand at 56.139 kb on + strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.140 kb on - strand at 56.144 kb on - strand at 56.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 53,339 + Ac3H11_3370 0.28 +0.9 53,339 + Ac3H11_3370 0.28 -0.2 53,340 - Ac3H11_3370 0.28 +0.4 53,340 - Ac3H11_3370 0.28 +0.2 53,462 + Ac3H11_3370 0.57 -0.1 53,462 + Ac3H11_3370 0.57 +0.4 53,463 - Ac3H11_3370 0.58 -1.1 53,463 - Ac3H11_3370 0.58 -0.9 53,463 - Ac3H11_3370 0.58 -0.1 53,463 - Ac3H11_3370 0.58 -0.0 53,463 - Ac3H11_3370 0.58 +0.5 53,580 + Ac3H11_3370 0.85 -0.3 53,581 - Ac3H11_3370 0.86 -0.3 53,625 + -0.2 53,625 + -0.2 53,626 - -0.1 53,640 + +1.1 53,640 + -0.2 53,640 + -0.3 53,641 - -0.5 53,656 + +0.2 53,657 - +0.3 53,691 + -0.3 53,691 + +0.6 53,691 + -0.0 53,691 + +0.2 53,691 + +0.5 53,691 + -0.1 53,691 + -0.4 53,691 + -0.3 53,691 + -0.5 53,691 + -0.2 53,691 + -0.3 53,692 - +0.9 53,692 - +0.5 53,692 - +1.3 53,692 - -0.8 53,692 - +0.5 53,692 - -1.4 53,692 - +0.6 53,692 - +0.0 53,692 - -0.3 53,929 + Ac3H11_3371 0.16 +0.1 53,929 + Ac3H11_3371 0.16 -0.9 53,929 + Ac3H11_3371 0.16 -0.0 54,345 + Ac3H11_3371 0.45 -2.3 54,345 + Ac3H11_3371 0.45 -2.3 54,345 + Ac3H11_3371 0.45 -1.2 54,346 - Ac3H11_3371 0.45 +0.3 54,346 - Ac3H11_3371 0.45 -0.7 54,522 + Ac3H11_3371 0.57 -0.8 54,522 + Ac3H11_3371 0.57 +0.1 54,522 + Ac3H11_3371 0.57 -0.5 54,522 + Ac3H11_3371 0.57 +0.6 54,523 - Ac3H11_3371 0.57 +0.8 54,523 - Ac3H11_3371 0.57 -0.1 54,690 + Ac3H11_3371 0.68 +1.3 54,690 + Ac3H11_3371 0.68 -0.4 54,691 - Ac3H11_3371 0.69 +0.5 54,691 - Ac3H11_3371 0.69 +1.4 54,691 - Ac3H11_3371 0.69 -1.7 54,912 + Ac3H11_3371 0.84 -0.3 55,111 + -1.3 55,111 + +0.0 55,111 + -0.4 55,113 + -1.6 55,113 + +0.6 55,114 - -1.1 55,153 + -0.4 55,154 - +0.0 55,164 + +0.5 55,164 + +0.3 55,164 + +0.3 55,164 + -1.3 55,164 + +0.2 55,164 + -1.4 55,164 + -0.3 55,164 + -0.4 55,164 + +0.9 55,164 + -2.0 55,164 + +0.8 55,164 + -1.7 55,164 + -0.8 55,164 + -2.3 55,164 + +0.3 55,165 - +0.0 55,165 - +2.1 55,165 - -0.2 55,165 - +1.6 55,165 - -1.0 55,165 - +0.3 55,165 - -0.3 55,165 - +0.2 55,165 - +0.6 55,165 - +0.1 55,165 - -1.1 55,165 - +1.0 55,165 - +0.1 55,165 - +0.1 55,165 - +1.5 55,166 + +0.7 55,166 + +0.1 55,166 + +1.9 55,166 + -0.1 55,166 + -0.3 55,167 - -1.5 55,167 - -0.4 55,167 - +1.5 55,167 - -0.7 55,188 + +0.2 55,324 + Ac3H11_3372 0.10 -0.3 55,324 + Ac3H11_3372 0.10 -0.2 55,324 + Ac3H11_3372 0.10 +0.3 55,325 - +0.2 55,355 - Ac3H11_3372 0.14 +2.0 55,519 + Ac3H11_3372 0.33 -3.0 55,519 + Ac3H11_3372 0.33 -0.2 55,604 - Ac3H11_3372 0.44 -0.1 55,675 + Ac3H11_3372 0.52 -0.7 55,675 + Ac3H11_3372 0.52 -0.8 55,675 + Ac3H11_3372 0.52 +0.1 56,068 + +1.7 56,069 - -0.3 56,071 + +1.5 56,071 + -0.6 56,102 + -1.2 56,102 + -0.3 56,102 + -1.1 56,102 + -0.1 56,102 + -1.0 56,102 + -0.9 56,102 + +1.0 56,102 + -0.9 56,102 + +0.3 56,103 - -0.1 56,103 - +0.4 56,103 - -1.3 56,103 - -0.8 56,103 - -1.1 56,103 - -0.4 56,103 - -0.5 56,139 + -0.3 56,139 + +0.4 56,140 - +0.3 56,140 - -0.1 56,140 - -0.5 56,140 - +0.4 56,140 - -0.3 56,140 - +0.1 56,140 - +1.3 56,140 - -0.5 56,140 - +0.6 56,140 - +1.2 56,140 - -0.4 56,140 - -0.0 56,140 - -0.7 56,144 - -1.7 56,144 - -0.5
Or see this region's nucleotide sequence