Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3135

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3133 and Ac3H11_3134 overlap by 4 nucleotidesAc3H11_3134 and Ac3H11_3135 are separated by 91 nucleotidesAc3H11_3135 and Ac3H11_3136 are separated by 4 nucleotidesAc3H11_3136 and Ac3H11_3137 overlap by 4 nucleotides Ac3H11_3133 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 33,948 to 34,412 _3133 Ac3H11_3134 - Transcription termination protein NusB, at 34,409 to 34,951 _3134 Ac3H11_3135 - Aspartate aminotransferase (EC 2.6.1.1), at 35,043 to 36,227 _3135 Ac3H11_3136 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 36,232 to 36,651 _3136 Ac3H11_3137 - MotA/TolQ/ExbB proton channel family protein, at 36,648 to 37,361 _3137 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 34.218 kb on + strand, within Ac3H11_3133at 34.218 kb on + strand, within Ac3H11_3133at 34.218 kb on + strand, within Ac3H11_3133at 34.278 kb on + strand, within Ac3H11_3133at 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.082 kb on + strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.083 kb on - strandat 35.241 kb on + strand, within Ac3H11_3135at 35.241 kb on + strand, within Ac3H11_3135at 35.241 kb on + strand, within Ac3H11_3135at 35.241 kb on + strand, within Ac3H11_3135at 35.242 kb on - strand, within Ac3H11_3135at 35.242 kb on - strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.285 kb on + strand, within Ac3H11_3135at 35.286 kb on - strand, within Ac3H11_3135at 35.286 kb on - strand, within Ac3H11_3135at 35.286 kb on - strand, within Ac3H11_3135at 35.293 kb on - strand, within Ac3H11_3135at 35.293 kb on - strand, within Ac3H11_3135at 35.293 kb on - strand, within Ac3H11_3135at 35.424 kb on + strand, within Ac3H11_3135at 35.424 kb on + strand, within Ac3H11_3135at 35.424 kb on + strand, within Ac3H11_3135at 35.424 kb on + strand, within Ac3H11_3135at 35.425 kb on - strand, within Ac3H11_3135at 35.425 kb on - strand, within Ac3H11_3135at 35.507 kb on + strand, within Ac3H11_3135at 35.508 kb on - strand, within Ac3H11_3135at 35.508 kb on - strand, within Ac3H11_3135at 35.508 kb on - strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.667 kb on + strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.668 kb on - strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.671 kb on + strand, within Ac3H11_3135at 35.672 kb on - strand, within Ac3H11_3135at 35.672 kb on - strand, within Ac3H11_3135at 35.672 kb on - strand, within Ac3H11_3135at 35.683 kb on - strand, within Ac3H11_3135at 35.754 kb on + strand, within Ac3H11_3135at 35.754 kb on + strand, within Ac3H11_3135at 35.755 kb on - strand, within Ac3H11_3135at 35.868 kb on + strand, within Ac3H11_3135at 35.868 kb on + strand, within Ac3H11_3135at 35.910 kb on + strand, within Ac3H11_3135at 35.911 kb on - strand, within Ac3H11_3135at 35.911 kb on - strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.012 kb on + strand, within Ac3H11_3135at 36.013 kb on - strand, within Ac3H11_3135at 36.013 kb on - strand, within Ac3H11_3135at 36.013 kb on - strand, within Ac3H11_3135at 36.056 kb on - strand, within Ac3H11_3135at 36.259 kb on + strandat 36.259 kb on + strandat 36.259 kb on + strandat 36.260 kb on - strandat 36.260 kb on - strandat 36.260 kb on - strandat 36.260 kb on - strandat 36.260 kb on - strandat 36.260 kb on - strandat 36.296 kb on - strand, within Ac3H11_3136at 36.304 kb on + strand, within Ac3H11_3136at 36.304 kb on + strand, within Ac3H11_3136at 36.304 kb on + strand, within Ac3H11_3136at 36.304 kb on + strand, within Ac3H11_3136at 36.304 kb on + strand, within Ac3H11_3136at 36.304 kb on + strand, within Ac3H11_3136at 36.305 kb on - strand, within Ac3H11_3136at 36.305 kb on - strand, within Ac3H11_3136at 36.305 kb on - strand, within Ac3H11_3136at 36.402 kb on - strand, within Ac3H11_3136

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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34,218 + Ac3H11_3133 0.58 -2.2
34,218 + Ac3H11_3133 0.58 -1.3
34,218 + Ac3H11_3133 0.58 +0.2
34,278 + Ac3H11_3133 0.71 -1.6
35,082 + -0.2
35,082 + -0.3
35,082 + -0.2
35,082 + -0.0
35,082 + -0.8
35,082 + -1.5
35,082 + -0.5
35,082 + -0.3
35,083 - -0.9
35,083 - -0.6
35,083 - +0.4
35,083 - +0.8
35,083 - -2.2
35,083 - -1.2
35,083 - -0.0
35,083 - -0.1
35,083 - +0.4
35,083 - -0.8
35,241 + Ac3H11_3135 0.17 -0.2
35,241 + Ac3H11_3135 0.17 -0.5
35,241 + Ac3H11_3135 0.17 -2.1
35,241 + Ac3H11_3135 0.17 +0.6
35,242 - Ac3H11_3135 0.17 -0.9
35,242 - Ac3H11_3135 0.17 -2.0
35,285 + Ac3H11_3135 0.20 +0.1
35,285 + Ac3H11_3135 0.20 +1.1
35,285 + Ac3H11_3135 0.20 -0.0
35,285 + Ac3H11_3135 0.20 -0.1
35,285 + Ac3H11_3135 0.20 +0.1
35,286 - Ac3H11_3135 0.21 -0.9
35,286 - Ac3H11_3135 0.21 -0.2
35,286 - Ac3H11_3135 0.21 -0.9
35,293 - Ac3H11_3135 0.21 -1.1
35,293 - Ac3H11_3135 0.21 -0.5
35,293 - Ac3H11_3135 0.21 +0.4
35,424 + Ac3H11_3135 0.32 +0.3
35,424 + Ac3H11_3135 0.32 -0.6
35,424 + Ac3H11_3135 0.32 -0.2
35,424 + Ac3H11_3135 0.32 -0.3
35,425 - Ac3H11_3135 0.32 +2.3
35,425 - Ac3H11_3135 0.32 -1.2
35,507 + Ac3H11_3135 0.39 -1.4
35,508 - Ac3H11_3135 0.39 -0.2
35,508 - Ac3H11_3135 0.39 -0.6
35,508 - Ac3H11_3135 0.39 +0.7
35,667 + Ac3H11_3135 0.53 -2.4
35,667 + Ac3H11_3135 0.53 -0.8
35,667 + Ac3H11_3135 0.53 -2.0
35,667 + Ac3H11_3135 0.53 +0.2
35,667 + Ac3H11_3135 0.53 +0.6
35,667 + Ac3H11_3135 0.53 -0.3
35,667 + Ac3H11_3135 0.53 -0.7
35,667 + Ac3H11_3135 0.53 +0.1
35,667 + Ac3H11_3135 0.53 -0.0
35,667 + Ac3H11_3135 0.53 -1.2
35,667 + Ac3H11_3135 0.53 +0.3
35,668 - Ac3H11_3135 0.53 -0.4
35,668 - Ac3H11_3135 0.53 -1.5
35,668 - Ac3H11_3135 0.53 -2.5
35,668 - Ac3H11_3135 0.53 +0.7
35,668 - Ac3H11_3135 0.53 -0.6
35,668 - Ac3H11_3135 0.53 +1.1
35,668 - Ac3H11_3135 0.53 -0.1
35,668 - Ac3H11_3135 0.53 -0.4
35,671 + Ac3H11_3135 0.53 +0.2
35,671 + Ac3H11_3135 0.53 +0.2
35,671 + Ac3H11_3135 0.53 +1.0
35,671 + Ac3H11_3135 0.53 -0.1
35,671 + Ac3H11_3135 0.53 +1.6
35,671 + Ac3H11_3135 0.53 -0.2
35,672 - Ac3H11_3135 0.53 +0.3
35,672 - Ac3H11_3135 0.53 -0.8
35,672 - Ac3H11_3135 0.53 +1.3
35,683 - Ac3H11_3135 0.54 -1.0
35,754 + Ac3H11_3135 0.60 +0.4
35,754 + Ac3H11_3135 0.60 -1.1
35,755 - Ac3H11_3135 0.60 +0.8
35,868 + Ac3H11_3135 0.70 -0.2
35,868 + Ac3H11_3135 0.70 -1.7
35,910 + Ac3H11_3135 0.73 -0.2
35,911 - Ac3H11_3135 0.73 -0.6
35,911 - Ac3H11_3135 0.73 -0.1
36,012 + Ac3H11_3135 0.82 +0.9
36,012 + Ac3H11_3135 0.82 -2.2
36,012 + Ac3H11_3135 0.82 +0.5
36,012 + Ac3H11_3135 0.82 -0.0
36,012 + Ac3H11_3135 0.82 +0.3
36,012 + Ac3H11_3135 0.82 -0.3
36,012 + Ac3H11_3135 0.82 -0.4
36,012 + Ac3H11_3135 0.82 +0.2
36,012 + Ac3H11_3135 0.82 -0.2
36,013 - Ac3H11_3135 0.82 -0.9
36,013 - Ac3H11_3135 0.82 -0.4
36,013 - Ac3H11_3135 0.82 +0.3
36,056 - Ac3H11_3135 0.85 +0.1
36,259 + -0.1
36,259 + +2.1
36,259 + +0.2
36,260 - -0.4
36,260 - +2.2
36,260 - -0.4
36,260 - +0.5
36,260 - -0.4
36,260 - -2.6
36,296 - Ac3H11_3136 0.15 +1.4
36,304 + Ac3H11_3136 0.17 +1.2
36,304 + Ac3H11_3136 0.17 -0.4
36,304 + Ac3H11_3136 0.17 +0.1
36,304 + Ac3H11_3136 0.17 +1.5
36,304 + Ac3H11_3136 0.17 -0.4
36,304 + Ac3H11_3136 0.17 -0.7
36,305 - Ac3H11_3136 0.17 +0.1
36,305 - Ac3H11_3136 0.17 -1.7
36,305 - Ac3H11_3136 0.17 +0.3
36,402 - Ac3H11_3136 0.40 -0.4

Or see this region's nucleotide sequence