Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_308

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_306 and Ac3H11_307 are separated by 12 nucleotidesAc3H11_307 and Ac3H11_308 are separated by 6 nucleotidesAc3H11_308 and Ac3H11_309 are separated by 207 nucleotidesAc3H11_309 and Ac3H11_310 are separated by 42 nucleotides Ac3H11_306 - Epoxyqueuosine (oQ) reductase QueG, at 127,444 to 128,490 _306 Ac3H11_307 - TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 128,503 to 129,021 _307 Ac3H11_308 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 129,028 to 130,491 _308 Ac3H11_309 - hypothetical protein, at 130,699 to 131,031 _309 Ac3H11_310 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 131,074 to 132,654 _310 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.172 kb on - strand, within Ac3H11_306at 128.172 kb on - strand, within Ac3H11_306at 128.189 kb on + strand, within Ac3H11_306at 128.189 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.286 kb on - strand, within Ac3H11_306at 128.286 kb on - strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.535 kb on - strandat 128.535 kb on - strandat 130.489 kb on + strandat 130.489 kb on + strandat 130.489 kb on + strandat 130.490 kb on - strandat 130.490 kb on - strandat 130.606 kb on + strandat 130.606 kb on + strandat 130.606 kb on + strandat 130.606 kb on + strandat 130.606 kb on + strandat 130.606 kb on + strandat 130.607 kb on - strandat 130.607 kb on - strandat 130.607 kb on - strandat 130.607 kb on - strandat 130.607 kb on - strandat 130.607 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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128,171 + Ac3H11_306 0.69 +0.0
128,171 + Ac3H11_306 0.69 +0.9
128,171 + Ac3H11_306 0.69 -0.1
128,171 + Ac3H11_306 0.69 -1.6
128,171 + Ac3H11_306 0.69 -0.9
128,172 - Ac3H11_306 0.70 +0.2
128,172 - Ac3H11_306 0.70 +0.3
128,189 + Ac3H11_306 0.71 -0.1
128,189 + Ac3H11_306 0.71 +0.2
128,285 + Ac3H11_306 0.80 -0.4
128,285 + Ac3H11_306 0.80 +0.3
128,285 + Ac3H11_306 0.80 +0.2
128,285 + Ac3H11_306 0.80 +0.6
128,285 + Ac3H11_306 0.80 +0.6
128,286 - Ac3H11_306 0.80 -0.9
128,286 - Ac3H11_306 0.80 -0.6
128,369 + Ac3H11_306 0.88 +0.4
128,369 + Ac3H11_306 0.88 +0.3
128,369 + Ac3H11_306 0.88 +0.0
128,369 + Ac3H11_306 0.88 +0.1
128,369 + Ac3H11_306 0.88 -0.7
128,369 + Ac3H11_306 0.88 +1.0
128,369 + Ac3H11_306 0.88 +0.6
128,369 + Ac3H11_306 0.88 -0.4
128,369 + Ac3H11_306 0.88 -0.4
128,369 + Ac3H11_306 0.88 +0.1
128,369 + Ac3H11_306 0.88 -0.2
128,369 + Ac3H11_306 0.88 +0.3
128,369 + Ac3H11_306 0.88 -1.2
128,369 + Ac3H11_306 0.88 +0.5
128,369 + Ac3H11_306 0.88 +0.8
128,369 + Ac3H11_306 0.88 +0.2
128,370 - Ac3H11_306 0.88 -1.0
128,370 - Ac3H11_306 0.88 -0.1
128,370 - Ac3H11_306 0.88 -0.9
128,370 - Ac3H11_306 0.88 +0.1
128,370 - Ac3H11_306 0.88 -1.0
128,370 - Ac3H11_306 0.88 -0.8
128,370 - Ac3H11_306 0.88 -0.9
128,370 - Ac3H11_306 0.88 +0.2
128,370 - Ac3H11_306 0.88 +0.5
128,370 - Ac3H11_306 0.88 -0.7
128,370 - Ac3H11_306 0.88 -1.3
128,370 - Ac3H11_306 0.88 -2.4
128,370 - Ac3H11_306 0.88 -0.2
128,370 - Ac3H11_306 0.88 -0.5
128,370 - Ac3H11_306 0.88 -1.2
128,370 - Ac3H11_306 0.88 -0.2
128,370 - Ac3H11_306 0.88 +0.3
128,370 - Ac3H11_306 0.88 +0.6
128,370 - Ac3H11_306 0.88 +0.1
128,370 - Ac3H11_306 0.88 -0.7
128,370 - Ac3H11_306 0.88 -0.2
128,370 - Ac3H11_306 0.88 +0.3
128,370 - Ac3H11_306 0.88 -1.7
128,370 - Ac3H11_306 0.88 -1.0
128,370 - Ac3H11_306 0.88 +0.3
128,370 - Ac3H11_306 0.88 +1.5
128,370 - Ac3H11_306 0.88 -2.6
128,370 - Ac3H11_306 0.88 +1.4
128,370 - Ac3H11_306 0.88 -1.3
128,370 - Ac3H11_306 0.88 +0.0
128,370 - Ac3H11_306 0.88 -0.1
128,370 - Ac3H11_306 0.88 -0.9
128,370 - Ac3H11_306 0.88 -0.1
128,370 - Ac3H11_306 0.88 +1.1
128,370 - Ac3H11_306 0.88 +0.7
128,370 - Ac3H11_306 0.88 -0.5
128,535 - +1.3
128,535 - -0.3
130,489 + -0.1
130,489 + +0.4
130,489 + +0.3
130,490 - +0.1
130,490 - +0.3
130,606 + +1.1
130,606 + +0.5
130,606 + -0.7
130,606 + +0.6
130,606 + +2.1
130,606 + -1.8
130,607 - -0.4
130,607 - +0.1
130,607 - -0.2
130,607 - -0.3
130,607 - +1.4
130,607 - -0.1

Or see this region's nucleotide sequence