Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2135 and Ac3H11_2136 are separated by 225 nucleotides Ac3H11_2136 and Ac3H11_2137 are separated by 26 nucleotides Ac3H11_2137 and Ac3H11_2138 are separated by 30 nucleotides Ac3H11_2138 and Ac3H11_2139 overlap by 23 nucleotides
Ac3H11_2135 - LSU ribosomal protein L3p (L3e), at 366,267 to 366,941
_2135
Ac3H11_2136 - SSU ribosomal protein S10p (S20e), at 367,167 to 367,478
_2136
Ac3H11_2137 - Translation elongation factor Tu, at 367,505 to 368,995
_2137
Ac3H11_2138 - hypothetical protein, at 369,026 to 369,160
_2138
Ac3H11_2139 - Translation elongation factor G, at 369,138 to 371,240
_2139
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 367.093 kb on - strand at 367.168 kb on + strand at 367.168 kb on + strand at 367.168 kb on + strand at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.136 kb on - strand, within Ac3H11_2138 at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand at 369.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 367,093 - -1.3 367,168 + -1.2 367,168 + -2.1 367,168 + -0.8 369,136 - Ac3H11_2138 0.81 -0.0 369,136 - Ac3H11_2138 0.81 -2.9 369,136 - Ac3H11_2138 0.81 -1.2 369,136 - Ac3H11_2138 0.81 -0.4 369,136 - Ac3H11_2138 0.81 +0.1 369,136 - Ac3H11_2138 0.81 -1.2 369,136 - Ac3H11_2138 0.81 -0.7 369,136 - Ac3H11_2138 0.81 -1.5 369,140 - +0.2 369,140 - -1.1 369,140 - -0.8 369,140 - -1.0 369,140 - -1.0 369,140 - -2.1 369,140 - -1.2 369,140 - -2.7 369,140 - -0.9 369,140 - -0.7
Or see this region's nucleotide sequence