Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1386

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1385 and Ac3H11_1386 are separated by 264 nucleotidesAc3H11_1386 and Ac3H11_1387 are separated by 4 nucleotidesAc3H11_1387 and Ac3H11_1388 are separated by 72 nucleotides Ac3H11_1385 - Flagellar biosynthesis protein FlhB, at 74,292 to 75,446 _1385 Ac3H11_1386 - Chemotaxis response - phosphatase CheZ, at 75,711 to 76,331 _1386 Ac3H11_1387 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 76,336 to 76,722 _1387 Ac3H11_1388 - Flagellar motor rotation protein MotB, at 76,795 to 77,727 _1388 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 74.954 kb on + strand, within Ac3H11_1385at 74.954 kb on + strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 75.499 kb on + strandat 75.500 kb on - strandat 75.509 kb on + strandat 75.615 kb on + strandat 75.619 kb on + strandat 75.663 kb on + strandat 75.663 kb on + strandat 75.663 kb on + strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.831 kb on + strand, within Ac3H11_1386at 75.831 kb on + strand, within Ac3H11_1386at 75.831 kb on + strand, within Ac3H11_1386at 75.832 kb on - strand, within Ac3H11_1386at 75.832 kb on - strand, within Ac3H11_1386at 75.860 kb on + strand, within Ac3H11_1386at 75.860 kb on + strand, within Ac3H11_1386at 75.860 kb on + strand, within Ac3H11_1386at 75.861 kb on - strand, within Ac3H11_1386at 76.171 kb on + strand, within Ac3H11_1386at 76.171 kb on + strand, within Ac3H11_1386at 76.171 kb on + strand, within Ac3H11_1386at 76.171 kb on + strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.290 kb on + strandat 76.290 kb on + strandat 76.290 kb on + strandat 76.290 kb on + strandat 76.291 kb on - strandat 76.291 kb on - strandat 76.291 kb on - strandat 76.339 kb on + strandat 76.339 kb on + strandat 76.339 kb on + strandat 76.339 kb on + strandat 76.340 kb on - strandat 76.340 kb on - strandat 76.340 kb on - strandat 76.392 kb on + strand, within Ac3H11_1387at 76.392 kb on + strand, within Ac3H11_1387at 76.393 kb on - strand, within Ac3H11_1387at 76.409 kb on + strand, within Ac3H11_1387at 76.409 kb on + strand, within Ac3H11_1387at 76.410 kb on - strand, within Ac3H11_1387at 76.410 kb on - strand, within Ac3H11_1387at 76.746 kb on + strandat 76.746 kb on + strandat 76.746 kb on + strandat 76.746 kb on + strandat 76.747 kb on - strandat 76.747 kb on - strandat 76.747 kb on - strandat 76.747 kb on - strandat 76.747 kb on - strandat 76.747 kb on - strandat 76.747 kb on - strandat 76.747 kb on - strandat 76.751 kb on + strandat 76.751 kb on + strandat 76.752 kb on - strandat 76.752 kb on - strandat 76.752 kb on - strandat 76.775 kb on + strandat 76.776 kb on - strandat 76.789 kb on + strandat 76.789 kb on + strandat 76.790 kb on - strandat 76.796 kb on + strandat 76.796 kb on + strandat 76.796 kb on + strandat 76.797 kb on - strandat 76.797 kb on - strandat 76.797 kb on - strandat 76.797 kb on - strandat 76.797 kb on - strandat 76.797 kb on - strandat 76.992 kb on + strand, within Ac3H11_1388at 76.992 kb on + strand, within Ac3H11_1388at 76.992 kb on + strand, within Ac3H11_1388at 76.992 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.067 kb on + strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.068 kb on - strand, within Ac3H11_1388at 77.069 kb on + strand, within Ac3H11_1388at 77.070 kb on - strand, within Ac3H11_1388at 77.091 kb on - strand, within Ac3H11_1388at 77.180 kb on + strand, within Ac3H11_1388at 77.180 kb on + strand, within Ac3H11_1388at 77.180 kb on + strand, within Ac3H11_1388at 77.181 kb on - strand, within Ac3H11_1388at 77.181 kb on - strand, within Ac3H11_1388at 77.188 kb on + strand, within Ac3H11_1388at 77.188 kb on + strand, within Ac3H11_1388at 77.188 kb on + strand, within Ac3H11_1388at 77.188 kb on + strand, within Ac3H11_1388at 77.189 kb on - strand, within Ac3H11_1388at 77.189 kb on - strand, within Ac3H11_1388at 77.189 kb on - strand, within Ac3H11_1388at 77.189 kb on - strand, within Ac3H11_1388at 77.189 kb on - strandat 77.288 kb on + strand, within Ac3H11_1388at 77.288 kb on + strand, within Ac3H11_1388at 77.288 kb on + strand, within Ac3H11_1388at 77.288 kb on + strand, within Ac3H11_1388at 77.288 kb on + strand, within Ac3H11_1388at 77.288 kb on + strand, within Ac3H11_1388at 77.288 kb on + strand, within Ac3H11_1388at 77.288 kb on + strand, within Ac3H11_1388at 77.288 kb on + strand, within Ac3H11_1388at 77.289 kb on - strand, within Ac3H11_1388at 77.289 kb on - strand, within Ac3H11_1388at 77.289 kb on - strand, within Ac3H11_1388

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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74,954 + Ac3H11_1385 0.57 -1.1
74,954 + Ac3H11_1385 0.57 -0.5
74,955 - Ac3H11_1385 0.57 -0.0
74,955 - Ac3H11_1385 0.57 +0.1
74,955 - Ac3H11_1385 0.57 -1.3
74,955 - Ac3H11_1385 0.57 -0.6
75,499 + -0.1
75,500 - +0.3
75,509 + +0.4
75,615 + -0.2
75,619 + +1.0
75,663 + +0.5
75,663 + -1.1
75,663 + -0.0
75,664 - +0.5
75,664 - +0.6
75,664 - -0.8
75,664 - -0.5
75,664 - +0.2
75,664 - +0.5
75,664 - +0.5
75,664 - -0.5
75,831 + Ac3H11_1386 0.19 +1.1
75,831 + Ac3H11_1386 0.19 -0.9
75,831 + Ac3H11_1386 0.19 +0.9
75,832 - Ac3H11_1386 0.19 +0.9
75,832 - Ac3H11_1386 0.19 -1.2
75,860 + Ac3H11_1386 0.24 -0.2
75,860 + Ac3H11_1386 0.24 -0.0
75,860 + Ac3H11_1386 0.24 -0.7
75,861 - Ac3H11_1386 0.24 -0.1
76,171 + Ac3H11_1386 0.74 -0.3
76,171 + Ac3H11_1386 0.74 +0.4
76,171 + Ac3H11_1386 0.74 +0.3
76,171 + Ac3H11_1386 0.74 +0.5
76,172 - Ac3H11_1386 0.74 -1.1
76,172 - Ac3H11_1386 0.74 -0.0
76,172 - Ac3H11_1386 0.74 -0.3
76,172 - Ac3H11_1386 0.74 -0.4
76,172 - Ac3H11_1386 0.74 -0.1
76,172 - Ac3H11_1386 0.74 +0.0
76,172 - Ac3H11_1386 0.74 -0.3
76,172 - Ac3H11_1386 0.74 -0.7
76,172 - Ac3H11_1386 0.74 -0.0
76,172 - Ac3H11_1386 0.74 +0.9
76,172 - Ac3H11_1386 0.74 +1.6
76,172 - Ac3H11_1386 0.74 -0.7
76,172 - Ac3H11_1386 0.74 +1.2
76,290 + -1.9
76,290 + -0.6
76,290 + +0.6
76,290 + -0.3
76,291 - +1.1
76,291 - -2.6
76,291 - -0.0
76,339 + -0.2
76,339 + -0.9
76,339 + -1.6
76,339 + -1.9
76,340 - -0.8
76,340 - +0.5
76,340 - -0.4
76,392 + Ac3H11_1387 0.14 -0.5
76,392 + Ac3H11_1387 0.14 -0.7
76,393 - Ac3H11_1387 0.15 -2.0
76,409 + Ac3H11_1387 0.19 -2.5
76,409 + Ac3H11_1387 0.19 -0.5
76,410 - Ac3H11_1387 0.19 -0.7
76,410 - Ac3H11_1387 0.19 -0.4
76,746 + +0.5
76,746 + -0.8
76,746 + -1.7
76,746 + -1.8
76,747 - +0.1
76,747 - -0.1
76,747 - +0.6
76,747 - +0.4
76,747 - +1.3
76,747 - -1.0
76,747 - -0.8
76,747 - +0.3
76,751 + -0.9
76,751 + -3.5
76,752 - +0.4
76,752 - +0.2
76,752 - +0.1
76,775 + +0.5
76,776 - +0.4
76,789 + -0.5
76,789 + -1.1
76,790 - +1.1
76,796 + +0.3
76,796 + -1.7
76,796 + +0.8
76,797 - +1.6
76,797 - +2.1
76,797 - +1.6
76,797 - +1.3
76,797 - +1.1
76,797 - +1.6
76,992 + Ac3H11_1388 0.21 +1.5
76,992 + Ac3H11_1388 0.21 +0.5
76,992 + Ac3H11_1388 0.21 +0.4
76,992 + Ac3H11_1388 0.21 +1.2
77,067 + Ac3H11_1388 0.29 -1.5
77,067 + Ac3H11_1388 0.29 +1.2
77,067 + Ac3H11_1388 0.29 +0.3
77,067 + Ac3H11_1388 0.29 -0.0
77,067 + Ac3H11_1388 0.29 -0.7
77,067 + Ac3H11_1388 0.29 -0.8
77,067 + Ac3H11_1388 0.29 -0.2
77,067 + Ac3H11_1388 0.29 +0.8
77,067 + Ac3H11_1388 0.29 +1.6
77,067 + Ac3H11_1388 0.29 +0.0
77,067 + Ac3H11_1388 0.29 +0.5
77,067 + Ac3H11_1388 0.29 +0.0
77,068 - Ac3H11_1388 0.29 +2.1
77,068 - Ac3H11_1388 0.29 +1.2
77,068 - Ac3H11_1388 0.29 +2.2
77,068 - Ac3H11_1388 0.29 +1.0
77,068 - Ac3H11_1388 0.29 +1.0
77,068 - Ac3H11_1388 0.29 +1.1
77,068 - Ac3H11_1388 0.29 +1.4
77,068 - Ac3H11_1388 0.29 +0.4
77,068 - Ac3H11_1388 0.29 +1.8
77,069 + Ac3H11_1388 0.29 -1.8
77,070 - Ac3H11_1388 0.29 +1.0
77,091 - Ac3H11_1388 0.32 +0.5
77,180 + Ac3H11_1388 0.41 -1.0
77,180 + Ac3H11_1388 0.41 -0.4
77,180 + Ac3H11_1388 0.41 -0.1
77,181 - Ac3H11_1388 0.41 +0.9
77,181 - Ac3H11_1388 0.41 +0.7
77,188 + Ac3H11_1388 0.42 +0.5
77,188 + Ac3H11_1388 0.42 +1.3
77,188 + Ac3H11_1388 0.42 +0.3
77,188 + Ac3H11_1388 0.42 +0.3
77,189 - Ac3H11_1388 0.42 +0.8
77,189 - Ac3H11_1388 0.42 +0.1
77,189 - Ac3H11_1388 0.42 +1.0
77,189 - Ac3H11_1388 0.42 +1.4
77,189 - +0.2
77,288 + Ac3H11_1388 0.53 +0.2
77,288 + Ac3H11_1388 0.53 -1.1
77,288 + Ac3H11_1388 0.53 +0.1
77,288 + Ac3H11_1388 0.53 -0.4
77,288 + Ac3H11_1388 0.53 +0.2
77,288 + Ac3H11_1388 0.53 -0.7
77,288 + Ac3H11_1388 0.53 -0.6
77,288 + Ac3H11_1388 0.53 -0.4
77,288 + Ac3H11_1388 0.53 +0.5
77,289 - Ac3H11_1388 0.53 -0.0
77,289 - Ac3H11_1388 0.53 +0.7
77,289 - Ac3H11_1388 0.53 +1.0

Or see this region's nucleotide sequence