Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32265

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32260 and AZOBR_RS32265 are separated by 93 nucleotidesAZOBR_RS32265 and AZOBR_RS32270 are separated by 265 nucleotides AZOBR_RS32260: AZOBR_RS32260 - hypothetical protein, at 606,450 to 606,728 _RS32260 AZOBR_RS32265: AZOBR_RS32265 - hypothetical protein, at 606,822 to 607,211 _RS32265 AZOBR_RS32270: AZOBR_RS32270 - branched-chain amino acid ABC transporter substrate-binding protein, at 607,477 to 608,613 _RS32270 Position (kb) 606 607 608Strain fitness (log2 ratio) -1 0 1at 606.313 kb on + strandat 606.787 kb on - strandat 606.802 kb on - strandat 607.304 kb on + strandat 607.491 kb on - strandat 607.594 kb on + strand, within AZOBR_RS32270at 607.822 kb on + strand, within AZOBR_RS32270at 607.822 kb on + strand, within AZOBR_RS32270at 607.822 kb on + strand, within AZOBR_RS32270at 607.823 kb on - strand, within AZOBR_RS32270at 607.975 kb on + strand, within AZOBR_RS32270at 607.976 kb on - strand, within AZOBR_RS32270at 607.976 kb on - strand, within AZOBR_RS32270

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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606,313 + +0.2
606,787 - -0.3
606,802 - -0.0
607,304 + -1.1
607,491 - +0.0
607,594 + AZOBR_RS32270 0.10 +0.1
607,822 + AZOBR_RS32270 0.30 -1.1
607,822 + AZOBR_RS32270 0.30 -0.1
607,822 + AZOBR_RS32270 0.30 +0.2
607,823 - AZOBR_RS32270 0.30 -0.4
607,975 + AZOBR_RS32270 0.44 +0.1
607,976 - AZOBR_RS32270 0.44 -0.6
607,976 - AZOBR_RS32270 0.44 -0.1

Or see this region's nucleotide sequence