Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25575

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25570 and AZOBR_RS25575 are separated by 450 nucleotidesAZOBR_RS25575 and AZOBR_RS25580 are separated by 85 nucleotides AZOBR_RS25570: AZOBR_RS25570 - hypothetical protein, at 785,631 to 786,425 _RS25570 AZOBR_RS25575: AZOBR_RS25575 - phosphatidylethanolamine N-methyltransferase, at 786,876 to 787,511 _RS25575 AZOBR_RS25580: AZOBR_RS25580 - ABC transporter substrate-binding protein, at 787,597 to 788,880 _RS25580 Position (kb) 786 787 788Strain fitness (log2 ratio) -2 -1 0 1 2at 786.068 kb on - strand, within AZOBR_RS25570at 786.553 kb on + strandat 786.672 kb on + strandat 787.047 kb on + strand, within AZOBR_RS25575at 787.048 kb on - strandat 787.215 kb on + strand, within AZOBR_RS25575at 787.215 kb on + strand, within AZOBR_RS25575at 787.215 kb on + strand, within AZOBR_RS25575at 787.215 kb on + strand, within AZOBR_RS25575at 787.215 kb on + strand, within AZOBR_RS25575at 787.215 kb on + strand, within AZOBR_RS25575at 787.215 kb on + strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.216 kb on - strand, within AZOBR_RS25575at 787.900 kb on + strand, within AZOBR_RS25580at 787.900 kb on + strand, within AZOBR_RS25580at 787.900 kb on + strand, within AZOBR_RS25580at 787.901 kb on - strand, within AZOBR_RS25580at 787.901 kb on - strand, within AZOBR_RS25580at 787.901 kb on - strand, within AZOBR_RS25580at 787.901 kb on - strand, within AZOBR_RS25580at 788.029 kb on + strand, within AZOBR_RS25580at 788.030 kb on - strand, within AZOBR_RS25580at 788.030 kb on - strand, within AZOBR_RS25580at 788.155 kb on + strand, within AZOBR_RS25580at 788.156 kb on - strand, within AZOBR_RS25580at 788.177 kb on - strand, within AZOBR_RS25580at 788.341 kb on + strand, within AZOBR_RS25580at 788.341 kb on + strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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786,068 - AZOBR_RS25570 0.55 -0.1
786,553 + -0.1
786,672 + -0.5
787,047 + AZOBR_RS25575 0.27 +2.0
787,048 - +1.3
787,215 + AZOBR_RS25575 0.53 +0.0
787,215 + AZOBR_RS25575 0.53 +0.1
787,215 + AZOBR_RS25575 0.53 +0.0
787,215 + AZOBR_RS25575 0.53 +0.1
787,215 + AZOBR_RS25575 0.53 -2.2
787,215 + AZOBR_RS25575 0.53 +0.5
787,215 + AZOBR_RS25575 0.53 -0.5
787,216 - AZOBR_RS25575 0.53 -0.9
787,216 - AZOBR_RS25575 0.53 +0.3
787,216 - AZOBR_RS25575 0.53 -0.6
787,216 - AZOBR_RS25575 0.53 -0.2
787,216 - AZOBR_RS25575 0.53 -1.0
787,216 - AZOBR_RS25575 0.53 +0.1
787,216 - AZOBR_RS25575 0.53 -0.5
787,216 - AZOBR_RS25575 0.53 -0.1
787,216 - AZOBR_RS25575 0.53 -2.7
787,216 - AZOBR_RS25575 0.53 -0.7
787,900 + AZOBR_RS25580 0.24 -0.3
787,900 + AZOBR_RS25580 0.24 -0.4
787,900 + AZOBR_RS25580 0.24 +0.7
787,901 - AZOBR_RS25580 0.24 +0.5
787,901 - AZOBR_RS25580 0.24 -0.2
787,901 - AZOBR_RS25580 0.24 +0.3
787,901 - AZOBR_RS25580 0.24 -0.9
788,029 + AZOBR_RS25580 0.34 +0.7
788,030 - AZOBR_RS25580 0.34 +0.5
788,030 - AZOBR_RS25580 0.34 -0.3
788,155 + AZOBR_RS25580 0.43 +0.2
788,156 - AZOBR_RS25580 0.44 +0.8
788,177 - AZOBR_RS25580 0.45 +0.0
788,341 + AZOBR_RS25580 0.58 +1.5
788,341 + AZOBR_RS25580 0.58 +0.1
788,342 - AZOBR_RS25580 0.58 -1.0
788,342 - AZOBR_RS25580 0.58 -0.0
788,342 - AZOBR_RS25580 0.58 +0.2
788,342 - AZOBR_RS25580 0.58 -0.1
788,342 - AZOBR_RS25580 0.58 +0.8

Or see this region's nucleotide sequence