Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21675

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21665 and AZOBR_RS21670 overlap by 14 nucleotidesAZOBR_RS21670 and AZOBR_RS21675 overlap by 4 nucleotidesAZOBR_RS21675 and AZOBR_RS21680 are separated by 43 nucleotidesAZOBR_RS21680 and AZOBR_RS21685 are separated by 268 nucleotides AZOBR_RS21665: AZOBR_RS21665 - hypothetical protein, at 1,640,755 to 1,641,129 _RS21665 AZOBR_RS21670: AZOBR_RS21670 - hypothetical protein, at 1,641,116 to 1,641,727 _RS21670 AZOBR_RS21675: AZOBR_RS21675 - hypothetical protein, at 1,641,724 to 1,642,245 _RS21675 AZOBR_RS21680: AZOBR_RS21680 - hypothetical protein, at 1,642,289 to 1,642,576 _RS21680 AZOBR_RS21685: AZOBR_RS21685 - formyltetrahydrofolate deformylase, at 1,642,845 to 1,643,711 _RS21685 Position (kb) 1641 1642 1643Strain fitness (log2 ratio) -2 -1 0 1at 1641.004 kb on + strand, within AZOBR_RS21665at 1641.005 kb on - strand, within AZOBR_RS21665at 1641.365 kb on + strand, within AZOBR_RS21670at 1641.444 kb on - strand, within AZOBR_RS21670at 1641.695 kb on + strandat 1641.695 kb on + strandat 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.979 kb on + strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1641.980 kb on - strand, within AZOBR_RS21675at 1642.018 kb on + strand, within AZOBR_RS21675at 1642.021 kb on + strand, within AZOBR_RS21675at 1642.022 kb on - strand, within AZOBR_RS21675at 1642.022 kb on - strand, within AZOBR_RS21675at 1642.154 kb on - strand, within AZOBR_RS21675at 1642.220 kb on - strandat 1642.305 kb on + strandat 1642.359 kb on + strand, within AZOBR_RS21680at 1642.360 kb on - strand, within AZOBR_RS21680at 1642.443 kb on + strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.482 kb on - strand, within AZOBR_RS21680at 1642.762 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,641,004 + AZOBR_RS21665 0.66 +0.6
1,641,005 - AZOBR_RS21665 0.67 +0.4
1,641,365 + AZOBR_RS21670 0.41 +0.3
1,641,444 - AZOBR_RS21670 0.54 +0.4
1,641,695 + -0.1
1,641,695 + +0.1
1,641,979 + AZOBR_RS21675 0.49 -0.2
1,641,979 + AZOBR_RS21675 0.49 -0.2
1,641,979 + AZOBR_RS21675 0.49 +0.4
1,641,979 + AZOBR_RS21675 0.49 +0.1
1,641,979 + AZOBR_RS21675 0.49 -0.9
1,641,979 + AZOBR_RS21675 0.49 -2.6
1,641,979 + AZOBR_RS21675 0.49 +0.3
1,641,980 - AZOBR_RS21675 0.49 +0.0
1,641,980 - AZOBR_RS21675 0.49 -0.8
1,641,980 - AZOBR_RS21675 0.49 +0.3
1,641,980 - AZOBR_RS21675 0.49 +0.5
1,641,980 - AZOBR_RS21675 0.49 -0.3
1,641,980 - AZOBR_RS21675 0.49 +0.2
1,641,980 - AZOBR_RS21675 0.49 +0.9
1,642,018 + AZOBR_RS21675 0.56 -0.2
1,642,021 + AZOBR_RS21675 0.57 -0.2
1,642,022 - AZOBR_RS21675 0.57 -0.2
1,642,022 - AZOBR_RS21675 0.57 -0.1
1,642,154 - AZOBR_RS21675 0.82 +0.9
1,642,220 - +0.3
1,642,305 + +0.5
1,642,359 + AZOBR_RS21680 0.24 +0.4
1,642,360 - AZOBR_RS21680 0.25 -0.1
1,642,443 + AZOBR_RS21680 0.53 +0.1
1,642,482 - AZOBR_RS21680 0.67 +0.7
1,642,482 - AZOBR_RS21680 0.67 +0.6
1,642,482 - AZOBR_RS21680 0.67 +0.6
1,642,482 - AZOBR_RS21680 0.67 -0.2
1,642,482 - AZOBR_RS21680 0.67 +0.3
1,642,762 + +0.5

Or see this region's nucleotide sequence