Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20290

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20285 and AZOBR_RS20290 are separated by 79 nucleotidesAZOBR_RS20290 and AZOBR_RS20295 are separated by 133 nucleotides AZOBR_RS20285: AZOBR_RS20285 - hypothetical protein, at 1,321,578 to 1,322,786 _RS20285 AZOBR_RS20290: AZOBR_RS20290 - dihydroneopterin aldolase, at 1,322,866 to 1,323,249 _RS20290 AZOBR_RS20295: AZOBR_RS20295 - modification methylase, at 1,323,383 to 1,324,468 _RS20295 Position (kb) 1322 1323 1324Strain fitness (log2 ratio) -2 -1 0 1at 1321.947 kb on + strand, within AZOBR_RS20285at 1322.430 kb on + strand, within AZOBR_RS20285at 1322.431 kb on - strand, within AZOBR_RS20285at 1322.529 kb on + strand, within AZOBR_RS20285at 1322.529 kb on + strand, within AZOBR_RS20285at 1322.529 kb on + strand, within AZOBR_RS20285at 1322.529 kb on + strand, within AZOBR_RS20285at 1322.529 kb on + strand, within AZOBR_RS20285at 1322.529 kb on + strand, within AZOBR_RS20285at 1322.530 kb on - strand, within AZOBR_RS20285at 1322.530 kb on - strand, within AZOBR_RS20285at 1322.530 kb on - strand, within AZOBR_RS20285at 1322.634 kb on - strand, within AZOBR_RS20285at 1322.700 kb on + strandat 1322.700 kb on + strandat 1322.701 kb on - strandat 1322.701 kb on - strandat 1322.701 kb on - strandat 1322.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,321,947 + AZOBR_RS20285 0.31 +0.4
1,322,430 + AZOBR_RS20285 0.70 +0.0
1,322,431 - AZOBR_RS20285 0.71 +0.1
1,322,529 + AZOBR_RS20285 0.79 -0.3
1,322,529 + AZOBR_RS20285 0.79 -1.5
1,322,529 + AZOBR_RS20285 0.79 -0.1
1,322,529 + AZOBR_RS20285 0.79 -0.2
1,322,529 + AZOBR_RS20285 0.79 -2.2
1,322,529 + AZOBR_RS20285 0.79 +0.5
1,322,530 - AZOBR_RS20285 0.79 -0.1
1,322,530 - AZOBR_RS20285 0.79 +0.3
1,322,530 - AZOBR_RS20285 0.79 +0.4
1,322,634 - AZOBR_RS20285 0.87 +0.1
1,322,700 + +0.6
1,322,700 + -0.2
1,322,701 - -0.4
1,322,701 - +0.5
1,322,701 - +0.2
1,322,718 - -0.2

Or see this region's nucleotide sequence