Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15245 and AZOBR_RS15250 are separated by 881 nucleotides AZOBR_RS15250 and AZOBR_RS15255 are separated by 852 nucleotides
AZOBR_RS15245: AZOBR_RS15245 - hypothetical protein, at 190,022 to 190,213
_RS15245
AZOBR_RS15250: AZOBR_RS15250 - nuclease, at 191,095 to 191,781
_RS15250
AZOBR_RS15255: AZOBR_RS15255 - hypothetical protein, at 192,634 to 192,873
_RS15255
Position (kb)
191
192 Strain fitness (log2 ratio)
-1
0
1
2 at 190.168 kb on + strand, within AZOBR_RS15245 at 190.489 kb on - strand at 190.511 kb on + strand at 190.559 kb on + strand at 191.036 kb on + strand at 191.036 kb on + strand at 191.063 kb on + strand at 191.063 kb on + strand at 191.063 kb on + strand at 191.063 kb on + strand at 191.063 kb on + strand at 191.064 kb on - strand at 191.064 kb on - strand at 191.064 kb on - strand at 191.064 kb on - strand at 191.064 kb on - strand at 191.069 kb on + strand at 191.069 kb on + strand at 191.070 kb on - strand at 191.070 kb on - strand at 191.092 kb on - strand at 191.189 kb on + strand, within AZOBR_RS15250 at 191.190 kb on - strand, within AZOBR_RS15250 at 191.213 kb on + strand, within AZOBR_RS15250 at 191.213 kb on + strand, within AZOBR_RS15250 at 191.213 kb on + strand, within AZOBR_RS15250 at 191.213 kb on + strand, within AZOBR_RS15250 at 191.214 kb on - strand, within AZOBR_RS15250 at 191.214 kb on - strand, within AZOBR_RS15250 at 191.214 kb on - strand, within AZOBR_RS15250 at 191.214 kb on - strand, within AZOBR_RS15250 at 191.214 kb on - strand, within AZOBR_RS15250 at 191.214 kb on - strand, within AZOBR_RS15250 at 191.214 kb on - strand, within AZOBR_RS15250 at 191.423 kb on + strand, within AZOBR_RS15250 at 191.424 kb on - strand, within AZOBR_RS15250 at 191.435 kb on + strand, within AZOBR_RS15250 at 191.435 kb on + strand, within AZOBR_RS15250 at 191.435 kb on + strand, within AZOBR_RS15250 at 191.435 kb on + strand, within AZOBR_RS15250 at 191.435 kb on + strand, within AZOBR_RS15250 at 191.435 kb on + strand, within AZOBR_RS15250 at 191.445 kb on - strand, within AZOBR_RS15250 at 191.526 kb on - strand, within AZOBR_RS15250 at 192.006 kb on - strand at 192.160 kb on + strand at 192.422 kb on + strand at 192.467 kb on - strand at 192.766 kb on - strand, within AZOBR_RS15255 at 192.766 kb on - strand, within AZOBR_RS15255
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 190,168 + AZOBR_RS15245 0.76 +1.5 190,489 - +1.8 190,511 + +1.9 190,559 + +1.0 191,036 + +1.8 191,036 + +1.2 191,063 + +0.4 191,063 + +0.7 191,063 + +1.0 191,063 + +0.2 191,063 + +0.9 191,064 - -0.0 191,064 - +1.1 191,064 - +1.6 191,064 - +0.8 191,064 - +1.5 191,069 + +1.1 191,069 + +1.4 191,070 - +0.9 191,070 - +1.8 191,092 - +1.4 191,189 + AZOBR_RS15250 0.14 +2.0 191,190 - AZOBR_RS15250 0.14 +1.8 191,213 + AZOBR_RS15250 0.17 +1.8 191,213 + AZOBR_RS15250 0.17 +0.4 191,213 + AZOBR_RS15250 0.17 +1.5 191,213 + AZOBR_RS15250 0.17 +0.9 191,214 - AZOBR_RS15250 0.17 +0.8 191,214 - AZOBR_RS15250 0.17 +1.3 191,214 - AZOBR_RS15250 0.17 +1.4 191,214 - AZOBR_RS15250 0.17 +1.1 191,214 - AZOBR_RS15250 0.17 +1.3 191,214 - AZOBR_RS15250 0.17 +1.6 191,214 - AZOBR_RS15250 0.17 +0.5 191,423 + AZOBR_RS15250 0.48 -0.2 191,424 - AZOBR_RS15250 0.48 +1.1 191,435 + AZOBR_RS15250 0.49 +0.9 191,435 + AZOBR_RS15250 0.49 +1.1 191,435 + AZOBR_RS15250 0.49 +0.9 191,435 + AZOBR_RS15250 0.49 +0.7 191,435 + AZOBR_RS15250 0.49 -0.1 191,435 + AZOBR_RS15250 0.49 -0.7 191,445 - AZOBR_RS15250 0.51 +1.2 191,526 - AZOBR_RS15250 0.63 +0.5 192,006 - +2.3 192,160 + +1.2 192,422 + +0.5 192,467 - +1.0 192,766 - AZOBR_RS15255 0.55 -0.6 192,766 - AZOBR_RS15255 0.55 +0.0
Or see this region's nucleotide sequence