Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15080 and AZOBR_RS15085 are separated by 2 nucleotides AZOBR_RS15085 and AZOBR_RS15090 are separated by 1 nucleotides
AZOBR_RS15080: AZOBR_RS15080 - hypothetical protein, at 163,136 to 165,802
_RS15080
AZOBR_RS15085: AZOBR_RS15085 - exported protein of unknown function, at 165,805 to 166,647
_RS15085
AZOBR_RS15090: AZOBR_RS15090 - hypothetical protein, at 166,649 to 167,713
_RS15090
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -1
0
1
2 at 162.289 kb on + strand at 162.334 kb on + strand at 162.390 kb on - strand at 162.503 kb on + strand at 162.503 kb on + strand at 162.553 kb on - strand at 162.619 kb on + strand at 162.716 kb on + strand at 162.716 kb on + strand at 162.717 kb on - strand at 162.735 kb on + strand at 162.736 kb on - strand at 162.736 kb on - strand at 162.736 kb on - strand at 162.784 kb on - strand at 162.806 kb on - strand at 162.806 kb on - strand at 162.806 kb on - strand at 162.832 kb on - strand at 162.884 kb on + strand at 162.930 kb on + strand at 162.975 kb on - strand at 163.036 kb on - strand at 163.060 kb on + strand at 163.061 kb on - strand at 163.126 kb on - strand at 163.221 kb on + strand at 163.221 kb on + strand at 163.221 kb on + strand at 163.221 kb on + strand at 163.222 kb on - strand at 163.518 kb on + strand, within AZOBR_RS15080 at 163.699 kb on - strand, within AZOBR_RS15080 at 163.893 kb on + strand, within AZOBR_RS15080 at 163.894 kb on - strand, within AZOBR_RS15080 at 163.980 kb on - strand, within AZOBR_RS15080 at 164.227 kb on - strand, within AZOBR_RS15080 at 164.619 kb on + strand, within AZOBR_RS15080 at 164.620 kb on - strand, within AZOBR_RS15080 at 165.237 kb on + strand, within AZOBR_RS15080 at 165.238 kb on - strand, within AZOBR_RS15080 at 165.806 kb on + strand at 165.806 kb on + strand at 165.836 kb on + strand at 165.837 kb on - strand at 165.959 kb on + strand, within AZOBR_RS15085 at 165.959 kb on + strand, within AZOBR_RS15085 at 165.960 kb on - strand, within AZOBR_RS15085 at 166.260 kb on + strand, within AZOBR_RS15085 at 166.261 kb on - strand, within AZOBR_RS15085 at 166.589 kb on + strand at 166.640 kb on - strand at 166.640 kb on - strand at 166.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 162,289 + +1.0 162,334 + +1.2 162,390 - -0.2 162,503 + +0.7 162,503 + +1.3 162,553 - +1.3 162,619 + +1.8 162,716 + +1.6 162,716 + +1.6 162,717 - +1.6 162,735 + +0.7 162,736 - +0.6 162,736 - +0.9 162,736 - +1.0 162,784 - +0.3 162,806 - +1.2 162,806 - +1.8 162,806 - +1.8 162,832 - +0.2 162,884 + +0.5 162,930 + +0.9 162,975 - +1.0 163,036 - +1.2 163,060 + +1.8 163,061 - +0.4 163,126 - +1.9 163,221 + +1.1 163,221 + +2.3 163,221 + +0.2 163,221 + +1.8 163,222 - +2.4 163,518 + AZOBR_RS15080 0.14 +1.3 163,699 - AZOBR_RS15080 0.21 +0.9 163,893 + AZOBR_RS15080 0.28 +1.6 163,894 - AZOBR_RS15080 0.28 +0.2 163,980 - AZOBR_RS15080 0.32 +1.1 164,227 - AZOBR_RS15080 0.41 +1.0 164,619 + AZOBR_RS15080 0.56 +1.1 164,620 - AZOBR_RS15080 0.56 +0.4 165,237 + AZOBR_RS15080 0.79 +0.6 165,238 - AZOBR_RS15080 0.79 +2.1 165,806 + +1.0 165,806 + +1.1 165,836 + +0.9 165,837 - +0.7 165,959 + AZOBR_RS15085 0.18 +1.7 165,959 + AZOBR_RS15085 0.18 +1.1 165,960 - AZOBR_RS15085 0.18 -0.0 166,260 + AZOBR_RS15085 0.54 +1.3 166,261 - AZOBR_RS15085 0.54 +2.3 166,589 + +1.1 166,640 - +0.9 166,640 - +0.9 166,711 - +0.6
Or see this region's nucleotide sequence