Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14490 and AZOBR_RS14495 are separated by 72 nucleotides AZOBR_RS14495 and AZOBR_RS14500 are separated by 176 nucleotides AZOBR_RS14500 and AZOBR_RS14505 are separated by 7 nucleotides AZOBR_RS14505 and AZOBR_RS14510 are separated by 11 nucleotides
AZOBR_RS14490: AZOBR_RS14490 - hypothetical protein, at 21,806 to 22,114
_RS14490
AZOBR_RS14495: AZOBR_RS14495 - hypothetical protein, at 22,187 to 22,606
_RS14495
AZOBR_RS14500: AZOBR_RS14500 - nucleoside triphosphate pyrophosphohydrolase, at 22,783 to 23,592
_RS14500
AZOBR_RS14505: AZOBR_RS14505 - hydrogenase, at 23,600 to 24,121
_RS14505
AZOBR_RS14510: AZOBR_RS14510 - hydrogenase expression protein HypE, at 24,133 to 25,674
_RS14510
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1 at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.795 kb on - strand at 21.795 kb on - strand at 21.796 kb on + strand at 21.797 kb on - strand at 21.797 kb on - strand at 22.201 kb on + strand at 22.201 kb on + strand at 22.202 kb on - strand at 22.427 kb on + strand, within AZOBR_RS14495 at 22.457 kb on + strand, within AZOBR_RS14495 at 22.457 kb on + strand, within AZOBR_RS14495 at 22.458 kb on - strand, within AZOBR_RS14495 at 22.739 kb on - strand at 22.870 kb on + strand, within AZOBR_RS14500 at 22.870 kb on + strand, within AZOBR_RS14500 at 22.871 kb on - strand, within AZOBR_RS14500 at 22.906 kb on + strand, within AZOBR_RS14500 at 22.906 kb on + strand, within AZOBR_RS14500 at 22.907 kb on - strand, within AZOBR_RS14500 at 22.907 kb on - strand, within AZOBR_RS14500 at 22.987 kb on + strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.991 kb on - strand, within AZOBR_RS14500 at 22.991 kb on - strand, within AZOBR_RS14500 at 23.725 kb on - strand, within AZOBR_RS14505 at 23.913 kb on + strand, within AZOBR_RS14505 at 24.134 kb on + strand at 24.134 kb on + strand at 24.134 kb on + strand at 24.134 kb on + strand at 24.135 kb on - strand at 24.153 kb on - strand at 24.524 kb on + strand, within AZOBR_RS14510
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 21,794 + -0.1 21,794 + -0.1 21,794 + +0.0 21,794 + +0.4 21,794 + -0.0 21,794 + +0.2 21,795 - -0.6 21,795 - +0.6 21,796 + +0.1 21,797 - -0.0 21,797 - -0.3 22,201 + -0.1 22,201 + +0.7 22,202 - -0.6 22,427 + AZOBR_RS14495 0.57 -0.0 22,457 + AZOBR_RS14495 0.64 +0.4 22,457 + AZOBR_RS14495 0.64 -0.1 22,458 - AZOBR_RS14495 0.65 +0.1 22,739 - -0.5 22,870 + AZOBR_RS14500 0.11 +0.1 22,870 + AZOBR_RS14500 0.11 +0.6 22,871 - AZOBR_RS14500 0.11 -0.2 22,906 + AZOBR_RS14500 0.15 -0.8 22,906 + AZOBR_RS14500 0.15 +0.1 22,907 - AZOBR_RS14500 0.15 +0.5 22,907 - AZOBR_RS14500 0.15 +1.4 22,987 + AZOBR_RS14500 0.25 -1.9 22,988 - AZOBR_RS14500 0.25 +0.1 22,988 - AZOBR_RS14500 0.25 +0.1 22,988 - AZOBR_RS14500 0.25 -2.0 22,991 - AZOBR_RS14500 0.26 +0.4 22,991 - AZOBR_RS14500 0.26 -0.4 23,725 - AZOBR_RS14505 0.24 +0.1 23,913 + AZOBR_RS14505 0.60 -0.8 24,134 + +0.6 24,134 + +0.6 24,134 + -0.1 24,134 + -0.4 24,135 - +0.0 24,153 - -0.1 24,524 + AZOBR_RS14510 0.25 +0.1
Or see this region's nucleotide sequence