Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12525

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12525 and AZOBR_RS12530 are separated by 107 nucleotides AZOBR_RS12525: AZOBR_RS12525 - hypothetical protein, at 2,641,630 to 2,642,403 _RS12525 AZOBR_RS12530: AZOBR_RS12530 - GCN5 family acetyltransferase, at 2,642,511 to 2,643,038 _RS12530 Position (kb) 2641 2642 2643Strain fitness (log2 ratio) -1 0 1at 2642.165 kb on - strand, within AZOBR_RS12525at 2642.254 kb on + strand, within AZOBR_RS12525at 2642.254 kb on + strand, within AZOBR_RS12525at 2642.255 kb on - strand, within AZOBR_RS12525at 2642.255 kb on - strand, within AZOBR_RS12525at 2642.255 kb on - strand, within AZOBR_RS12525at 2642.402 kb on - strandat 2642.423 kb on + strandat 2642.423 kb on + strandat 2642.689 kb on + strand, within AZOBR_RS12530at 2642.770 kb on + strand, within AZOBR_RS12530at 2642.770 kb on + strand, within AZOBR_RS12530at 2642.771 kb on - strand, within AZOBR_RS12530at 2642.771 kb on - strand, within AZOBR_RS12530at 2642.816 kb on - strand, within AZOBR_RS12530at 2642.816 kb on - strand, within AZOBR_RS12530at 2642.828 kb on - strand, within AZOBR_RS12530at 2642.974 kb on + strand, within AZOBR_RS12530at 2642.975 kb on - strand, within AZOBR_RS12530at 2642.975 kb on - strand, within AZOBR_RS12530at 2643.122 kb on - strandat 2643.122 kb on - strandat 2643.125 kb on + strandat 2643.125 kb on + strandat 2643.125 kb on + strandat 2643.125 kb on + strandat 2643.125 kb on + strandat 2643.125 kb on + strandat 2643.126 kb on - strandat 2643.126 kb on - strandat 2643.126 kb on - strandat 2643.126 kb on - strandat 2643.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,642,165 - AZOBR_RS12525 0.69 +0.3
2,642,254 + AZOBR_RS12525 0.81 -0.5
2,642,254 + AZOBR_RS12525 0.81 -0.3
2,642,255 - AZOBR_RS12525 0.81 -0.4
2,642,255 - AZOBR_RS12525 0.81 +0.0
2,642,255 - AZOBR_RS12525 0.81 -0.2
2,642,402 - +0.6
2,642,423 + +0.0
2,642,423 + -0.1
2,642,689 + AZOBR_RS12530 0.34 -0.7
2,642,770 + AZOBR_RS12530 0.49 -0.5
2,642,770 + AZOBR_RS12530 0.49 -0.8
2,642,771 - AZOBR_RS12530 0.49 +0.0
2,642,771 - AZOBR_RS12530 0.49 +0.2
2,642,816 - AZOBR_RS12530 0.58 +0.2
2,642,816 - AZOBR_RS12530 0.58 -0.3
2,642,828 - AZOBR_RS12530 0.60 +0.1
2,642,974 + AZOBR_RS12530 0.88 -0.0
2,642,975 - AZOBR_RS12530 0.88 +0.1
2,642,975 - AZOBR_RS12530 0.88 -0.0
2,643,122 - +0.1
2,643,122 - -0.3
2,643,125 + -0.2
2,643,125 + -0.0
2,643,125 + -0.0
2,643,125 + +1.4
2,643,125 + +0.2
2,643,125 + -0.4
2,643,126 - -0.5
2,643,126 - +0.3
2,643,126 - -0.2
2,643,126 - -0.1
2,643,126 - +0.1

Or see this region's nucleotide sequence