Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02175 and AZOBR_RS02180 are separated by 92 nucleotides AZOBR_RS02180 and AZOBR_RS02185 overlap by 17 nucleotides AZOBR_RS02185 and AZOBR_RS02190 are separated by 32 nucleotides AZOBR_RS02190 and AZOBR_RS02195 are separated by 189 nucleotides
AZOBR_RS02175: AZOBR_RS02175 - hypothetical protein, at 447,449 to 447,787
_RS02175
AZOBR_RS02180: AZOBR_RS02180 - hypothetical protein, at 447,880 to 448,122
_RS02180
AZOBR_RS02185: AZOBR_RS02185 - dihydrofolate reductase, at 448,106 to 448,612
_RS02185
AZOBR_RS02190: AZOBR_RS02190 - methyl-accepting chemotaxis protein, at 448,645 to 450,336
_RS02190
AZOBR_RS02195: AZOBR_RS02195 - coproporphyrinogen III oxidase, at 450,526 to 451,692
_RS02195
Position (kb) 448
449
450
451 Strain fitness (log2 ratio) -2
-1
0
1
2 at 447.902 kb on - strand at 447.973 kb on + strand, within AZOBR_RS02180 at 448.021 kb on + strand, within AZOBR_RS02180 at 448.022 kb on - strand, within AZOBR_RS02180 at 448.146 kb on + strand at 448.146 kb on + strand at 448.147 kb on - strand at 448.153 kb on - strand at 448.646 kb on + strand at 448.647 kb on - strand at 448.729 kb on + strand at 448.730 kb on - strand at 449.852 kb on + strand, within AZOBR_RS02190 at 449.852 kb on + strand, within AZOBR_RS02190 at 449.852 kb on + strand, within AZOBR_RS02190 at 449.852 kb on + strand, within AZOBR_RS02190 at 449.853 kb on - strand, within AZOBR_RS02190 at 449.853 kb on - strand, within AZOBR_RS02190 at 449.853 kb on - strand, within AZOBR_RS02190 at 449.853 kb on - strand, within AZOBR_RS02190 at 449.903 kb on + strand, within AZOBR_RS02190 at 449.904 kb on - strand, within AZOBR_RS02190 at 450.059 kb on + strand, within AZOBR_RS02190 at 450.059 kb on + strand, within AZOBR_RS02190 at 450.059 kb on + strand, within AZOBR_RS02190 at 450.060 kb on - strand, within AZOBR_RS02190 at 450.060 kb on - strand, within AZOBR_RS02190 at 450.242 kb on + strand at 450.243 kb on - strand at 450.446 kb on + strand at 450.458 kb on + strand at 450.460 kb on + strand at 450.461 kb on - strand at 450.900 kb on - strand, within AZOBR_RS02195 at 450.918 kb on - strand, within AZOBR_RS02195 at 450.918 kb on - strand, within AZOBR_RS02195 at 450.971 kb on + strand, within AZOBR_RS02195 at 451.017 kb on - strand, within AZOBR_RS02195 at 451.193 kb on + strand, within AZOBR_RS02195 at 451.194 kb on - strand, within AZOBR_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 447,902 - -0.2 447,973 + AZOBR_RS02180 0.38 -0.2 448,021 + AZOBR_RS02180 0.58 -0.7 448,022 - AZOBR_RS02180 0.58 +0.5 448,146 + -1.3 448,146 + +0.1 448,147 - -0.2 448,153 - -0.1 448,646 + +0.2 448,647 - -0.4 448,729 + +2.3 448,730 - +0.4 449,852 + AZOBR_RS02190 0.71 +0.2 449,852 + AZOBR_RS02190 0.71 -0.0 449,852 + AZOBR_RS02190 0.71 +0.4 449,852 + AZOBR_RS02190 0.71 -0.1 449,853 - AZOBR_RS02190 0.71 +0.4 449,853 - AZOBR_RS02190 0.71 -0.1 449,853 - AZOBR_RS02190 0.71 +0.2 449,853 - AZOBR_RS02190 0.71 -1.3 449,903 + AZOBR_RS02190 0.74 -0.2 449,904 - AZOBR_RS02190 0.74 +0.6 450,059 + AZOBR_RS02190 0.84 +0.2 450,059 + AZOBR_RS02190 0.84 -0.1 450,059 + AZOBR_RS02190 0.84 -0.1 450,060 - AZOBR_RS02190 0.84 -1.4 450,060 - AZOBR_RS02190 0.84 -0.2 450,242 + +0.6 450,243 - -0.0 450,446 + -0.0 450,458 + -0.1 450,460 + +0.3 450,461 - +0.4 450,900 - AZOBR_RS02195 0.32 -0.2 450,918 - AZOBR_RS02195 0.34 -1.8 450,918 - AZOBR_RS02195 0.34 +0.3 450,971 + AZOBR_RS02195 0.38 -0.4 451,017 - AZOBR_RS02195 0.42 +0.3 451,193 + AZOBR_RS02195 0.57 -0.6 451,194 - AZOBR_RS02195 0.57 -0.3
Or see this region's nucleotide sequence