Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25835 and AO353_25840 are separated by 616 nucleotides AO353_25840 and AO353_25845 are separated by 76 nucleotides AO353_25845 and AO353_25850 are separated by 403 nucleotides
AO353_25835: AO353_25835 - 6-phosphogluconate dehydrogenase, at 5,695,016 to 5,695,996
_25835
AO353_25840: AO353_25840 - hypothetical protein, at 5,696,613 to 5,698,358
_25840
AO353_25845: AO353_25845 - GNAT family acetyltransferase, at 5,698,435 to 5,698,926
_25845
AO353_25850: AO353_25850 - peptidase C45, at 5,699,330 to 5,700,469
_25850
Position (kb) 5696
5697
5698
5699 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5695.654 kb on - strand, within AO353_25835 at 5695.654 kb on - strand, within AO353_25835 at 5695.702 kb on + strand, within AO353_25835 at 5695.703 kb on - strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.705 kb on - strand, within AO353_25835 at 5695.705 kb on - strand, within AO353_25835 at 5695.705 kb on - strand, within AO353_25835 at 5695.705 kb on - strand, within AO353_25835 at 5695.911 kb on + strand at 5695.912 kb on - strand at 5695.912 kb on - strand at 5695.912 kb on - strand at 5695.912 kb on - strand at 5696.011 kb on + strand at 5696.011 kb on + strand at 5696.012 kb on - strand at 5696.012 kb on - strand at 5696.012 kb on - strand at 5696.014 kb on + strand at 5696.014 kb on + strand at 5696.020 kb on + strand at 5696.020 kb on + strand at 5696.020 kb on + strand at 5696.021 kb on - strand at 5696.021 kb on - strand at 5696.021 kb on - strand at 5696.021 kb on - strand at 5696.021 kb on - strand at 5696.040 kb on + strand at 5696.041 kb on - strand at 5696.064 kb on + strand at 5696.084 kb on + strand at 5696.084 kb on + strand at 5696.084 kb on + strand at 5696.084 kb on + strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.109 kb on + strand at 5696.109 kb on + strand at 5696.109 kb on + strand at 5696.110 kb on - strand at 5696.112 kb on - strand at 5696.112 kb on - strand at 5696.176 kb on + strand at 5696.176 kb on + strand at 5696.282 kb on + strand at 5696.283 kb on - strand at 5696.285 kb on + strand at 5696.286 kb on - strand at 5696.311 kb on + strand at 5696.312 kb on - strand at 5696.312 kb on - strand at 5696.319 kb on + strand at 5696.320 kb on - strand at 5696.458 kb on - strand at 5696.473 kb on + strand at 5696.515 kb on + strand at 5696.515 kb on + strand at 5696.515 kb on + strand at 5696.516 kb on - strand at 5696.516 kb on - strand at 5696.528 kb on - strand at 5696.530 kb on - strand at 5696.591 kb on - strand at 5696.591 kb on - strand at 5696.591 kb on - strand at 5696.594 kb on + strand at 5696.594 kb on + strand at 5696.625 kb on - strand at 5696.625 kb on - strand at 5696.636 kb on + strand at 5696.637 kb on - strand at 5696.637 kb on - strand at 5696.637 kb on - strand at 5696.768 kb on + strand at 5696.769 kb on - strand at 5696.800 kb on + strand, within AO353_25840 at 5696.801 kb on - strand, within AO353_25840 at 5696.881 kb on - strand, within AO353_25840 at 5696.888 kb on + strand, within AO353_25840 at 5696.888 kb on + strand, within AO353_25840 at 5696.889 kb on - strand, within AO353_25840 at 5696.889 kb on - strand, within AO353_25840 at 5696.889 kb on - strand, within AO353_25840 at 5696.889 kb on - strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.961 kb on + strand, within AO353_25840 at 5696.961 kb on + strand at 5696.961 kb on + strand, within AO353_25840 at 5696.962 kb on - strand at 5696.962 kb on - strand, within AO353_25840 at 5696.962 kb on - strand, within AO353_25840 at 5696.974 kb on - strand, within AO353_25840 at 5696.974 kb on - strand, within AO353_25840 at 5697.025 kb on + strand, within AO353_25840 at 5697.025 kb on + strand, within AO353_25840 at 5697.026 kb on - strand, within AO353_25840 at 5697.026 kb on - strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.055 kb on - strand, within AO353_25840 at 5697.055 kb on - strand, within AO353_25840 at 5697.220 kb on - strand, within AO353_25840 at 5697.378 kb on + strand, within AO353_25840 at 5697.379 kb on - strand, within AO353_25840 at 5697.525 kb on + strand, within AO353_25840 at 5697.525 kb on + strand, within AO353_25840 at 5697.526 kb on - strand, within AO353_25840 at 5697.526 kb on - strand, within AO353_25840 at 5697.526 kb on - strand, within AO353_25840 at 5697.526 kb on - strand, within AO353_25840 at 5697.570 kb on + strand, within AO353_25840 at 5697.570 kb on + strand, within AO353_25840 at 5697.570 kb on + strand, within AO353_25840 at 5697.570 kb on + strand, within AO353_25840 at 5697.571 kb on - strand, within AO353_25840 at 5697.660 kb on + strand, within AO353_25840 at 5697.660 kb on + strand, within AO353_25840 at 5697.660 kb on + strand, within AO353_25840 at 5697.660 kb on + strand, within AO353_25840 at 5697.792 kb on + strand, within AO353_25840 at 5697.792 kb on + strand, within AO353_25840 at 5697.792 kb on + strand, within AO353_25840 at 5697.792 kb on + strand, within AO353_25840 at 5697.793 kb on - strand, within AO353_25840 at 5697.793 kb on - strand, within AO353_25840 at 5697.799 kb on - strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.880 kb on - strand, within AO353_25840 at 5697.880 kb on - strand, within AO353_25840 at 5697.889 kb on - strand, within AO353_25840 at 5697.889 kb on - strand, within AO353_25840 at 5697.889 kb on - strand, within AO353_25840 at 5697.889 kb on - strand, within AO353_25840 at 5697.906 kb on + strand, within AO353_25840 at 5697.907 kb on - strand, within AO353_25840 at 5697.907 kb on - strand, within AO353_25840 at 5697.907 kb on - strand, within AO353_25840 at 5697.943 kb on - strand, within AO353_25840 at 5697.975 kb on + strand, within AO353_25840 at 5697.975 kb on + strand, within AO353_25840 at 5698.034 kb on + strand, within AO353_25840 at 5698.063 kb on - strand, within AO353_25840 at 5698.146 kb on + strand, within AO353_25840 at 5698.147 kb on - strand, within AO353_25840 at 5698.147 kb on - strand, within AO353_25840 at 5698.272 kb on + strand at 5698.273 kb on - strand at 5698.356 kb on + strand at 5698.357 kb on - strand at 5698.437 kb on - strand at 5698.510 kb on - strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.512 kb on - strand, within AO353_25845 at 5698.877 kb on - strand at 5698.889 kb on + strand at 5698.889 kb on + strand at 5698.890 kb on - strand at 5698.999 kb on + strand at 5699.000 kb on - strand at 5699.069 kb on - strand at 5699.137 kb on - strand at 5699.146 kb on - strand at 5699.146 kb on - strand at 5699.147 kb on + strand at 5699.148 kb on - strand at 5699.183 kb on + strand at 5699.184 kb on - strand at 5699.246 kb on + strand at 5699.247 kb on - strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.345 kb on - strand at 5699.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 5,695,654 - AO353_25835 0.65 +0.1 5,695,654 - AO353_25835 0.65 +1.2 5,695,702 + AO353_25835 0.70 -0.6 5,695,703 - AO353_25835 0.70 -1.2 5,695,704 + AO353_25835 0.70 -2.1 5,695,704 + AO353_25835 0.70 +0.6 5,695,704 + AO353_25835 0.70 -0.2 5,695,704 + AO353_25835 0.70 +0.7 5,695,704 + AO353_25835 0.70 +0.2 5,695,704 + AO353_25835 0.70 +0.6 5,695,704 + -0.2 5,695,704 + AO353_25835 0.70 +0.8 5,695,704 + AO353_25835 0.70 -0.1 5,695,704 + AO353_25835 0.70 +0.2 5,695,705 - AO353_25835 0.70 -1.0 5,695,705 - AO353_25835 0.70 +0.2 5,695,705 - AO353_25835 0.70 +0.9 5,695,705 - AO353_25835 0.70 -0.7 5,695,911 + -0.1 5,695,912 - -0.8 5,695,912 - -0.1 5,695,912 - -0.7 5,695,912 - -1.3 5,696,011 + -0.2 5,696,011 + +0.0 5,696,012 - -0.8 5,696,012 - +0.3 5,696,012 - +0.3 5,696,014 + -0.1 5,696,014 + -1.8 5,696,020 + -1.1 5,696,020 + -2.5 5,696,020 + +0.3 5,696,021 - -0.5 5,696,021 - +1.2 5,696,021 - -1.8 5,696,021 - +0.5 5,696,021 - +0.4 5,696,040 + -1.5 5,696,041 - -0.5 5,696,064 + +0.9 5,696,084 + -0.7 5,696,084 + -1.1 5,696,084 + -0.7 5,696,084 + -1.0 5,696,085 - +0.0 5,696,085 - -0.6 5,696,085 - -0.5 5,696,085 - -1.5 5,696,085 - -0.2 5,696,085 - +0.8 5,696,085 - -0.6 5,696,109 + -0.9 5,696,109 + -0.8 5,696,109 + +1.2 5,696,110 - -1.1 5,696,112 - -0.0 5,696,112 - +0.0 5,696,176 + -0.2 5,696,176 + +1.6 5,696,282 + +0.1 5,696,283 - -0.6 5,696,285 + +0.3 5,696,286 - +0.6 5,696,311 + +0.2 5,696,312 - +0.3 5,696,312 - +2.8 5,696,319 + -0.1 5,696,320 - +0.8 5,696,458 - -0.3 5,696,473 + +0.1 5,696,515 + -1.2 5,696,515 + +0.0 5,696,515 + +0.1 5,696,516 - -0.2 5,696,516 - -0.2 5,696,528 - +0.6 5,696,530 - +0.3 5,696,591 - -1.2 5,696,591 - +0.4 5,696,591 - -0.3 5,696,594 + -0.5 5,696,594 + +0.6 5,696,625 - -0.7 5,696,625 - -1.0 5,696,636 + -0.8 5,696,637 - +0.3 5,696,637 - -0.1 5,696,637 - -1.5 5,696,768 + +1.8 5,696,769 - +0.1 5,696,800 + AO353_25840 0.11 -0.4 5,696,801 - AO353_25840 0.11 -0.5 5,696,881 - AO353_25840 0.15 -1.5 5,696,888 + AO353_25840 0.16 +1.1 5,696,888 + AO353_25840 0.16 -1.0 5,696,889 - AO353_25840 0.16 -0.3 5,696,889 - AO353_25840 0.16 +1.3 5,696,889 - AO353_25840 0.16 -0.7 5,696,889 - AO353_25840 0.16 +1.7 5,696,892 + AO353_25840 0.16 -1.1 5,696,892 + AO353_25840 0.16 +0.4 5,696,892 + AO353_25840 0.16 -2.1 5,696,892 + AO353_25840 0.16 -0.4 5,696,892 + AO353_25840 0.16 -1.5 5,696,892 + AO353_25840 0.16 -0.6 5,696,892 + AO353_25840 0.16 +0.6 5,696,893 - AO353_25840 0.16 +0.2 5,696,893 - AO353_25840 0.16 +0.4 5,696,893 - AO353_25840 0.16 -0.3 5,696,893 - AO353_25840 0.16 +0.1 5,696,893 - AO353_25840 0.16 -0.2 5,696,893 - AO353_25840 0.16 -1.8 5,696,961 + AO353_25840 0.20 -0.0 5,696,961 + -1.2 5,696,961 + AO353_25840 0.20 +0.1 5,696,962 - +0.1 5,696,962 - AO353_25840 0.20 +1.0 5,696,962 - AO353_25840 0.20 -0.7 5,696,974 - AO353_25840 0.21 +0.0 5,696,974 - AO353_25840 0.21 -0.6 5,697,025 + AO353_25840 0.24 +0.5 5,697,025 + AO353_25840 0.24 -0.4 5,697,026 - AO353_25840 0.24 +0.1 5,697,026 - AO353_25840 0.24 +2.6 5,697,054 + AO353_25840 0.25 -0.4 5,697,054 + AO353_25840 0.25 +0.1 5,697,054 + AO353_25840 0.25 -0.7 5,697,054 + AO353_25840 0.25 +1.1 5,697,054 + AO353_25840 0.25 +0.4 5,697,054 + AO353_25840 0.25 -0.3 5,697,055 - AO353_25840 0.25 +0.5 5,697,055 - AO353_25840 0.25 +0.5 5,697,220 - AO353_25840 0.35 -1.0 5,697,378 + AO353_25840 0.44 +0.1 5,697,379 - AO353_25840 0.44 +0.7 5,697,525 + AO353_25840 0.52 -0.2 5,697,525 + AO353_25840 0.52 +0.5 5,697,526 - AO353_25840 0.52 -0.1 5,697,526 - AO353_25840 0.52 -0.2 5,697,526 - AO353_25840 0.52 -0.1 5,697,526 - AO353_25840 0.52 +1.3 5,697,570 + AO353_25840 0.55 -0.4 5,697,570 + AO353_25840 0.55 -0.1 5,697,570 + AO353_25840 0.55 -0.2 5,697,570 + AO353_25840 0.55 -1.8 5,697,571 - AO353_25840 0.55 +0.9 5,697,660 + AO353_25840 0.60 -0.8 5,697,660 + AO353_25840 0.60 -2.2 5,697,660 + AO353_25840 0.60 +0.6 5,697,660 + AO353_25840 0.60 +0.3 5,697,792 + AO353_25840 0.68 -0.1 5,697,792 + AO353_25840 0.68 +0.8 5,697,792 + AO353_25840 0.68 -0.5 5,697,792 + AO353_25840 0.68 +0.8 5,697,793 - AO353_25840 0.68 +0.2 5,697,793 - AO353_25840 0.68 -1.0 5,697,799 - AO353_25840 0.68 +1.0 5,697,879 + AO353_25840 0.73 -2.3 5,697,879 + AO353_25840 0.73 -0.0 5,697,879 + AO353_25840 0.73 +0.4 5,697,879 + AO353_25840 0.73 -1.7 5,697,879 + AO353_25840 0.73 -1.4 5,697,880 - AO353_25840 0.73 +1.3 5,697,880 - AO353_25840 0.73 +0.2 5,697,889 - AO353_25840 0.73 +0.9 5,697,889 - AO353_25840 0.73 +0.3 5,697,889 - AO353_25840 0.73 +0.3 5,697,889 - AO353_25840 0.73 -0.9 5,697,906 + AO353_25840 0.74 +0.8 5,697,907 - AO353_25840 0.74 -1.0 5,697,907 - AO353_25840 0.74 +0.3 5,697,907 - AO353_25840 0.74 +1.0 5,697,943 - AO353_25840 0.76 +0.1 5,697,975 + AO353_25840 0.78 -0.7 5,697,975 + AO353_25840 0.78 -0.2 5,698,034 + AO353_25840 0.81 -0.1 5,698,063 - AO353_25840 0.83 +0.0 5,698,146 + AO353_25840 0.88 -0.2 5,698,147 - AO353_25840 0.88 -1.3 5,698,147 - AO353_25840 0.88 -0.9 5,698,272 + -0.2 5,698,273 - +0.9 5,698,356 + -0.0 5,698,357 - -0.1 5,698,437 - -0.2 5,698,510 - AO353_25845 0.15 -0.2 5,698,511 + AO353_25845 0.15 +0.9 5,698,511 + AO353_25845 0.15 +0.3 5,698,511 + AO353_25845 0.15 -0.1 5,698,511 + AO353_25845 0.15 -0.1 5,698,511 + AO353_25845 0.15 -0.7 5,698,512 - AO353_25845 0.16 +0.5 5,698,877 - -0.1 5,698,889 + +0.1 5,698,889 + -1.1 5,698,890 - -0.1 5,698,999 + +0.5 5,699,000 - -0.5 5,699,069 - +0.5 5,699,137 - +0.1 5,699,146 - +0.0 5,699,146 - +0.3 5,699,147 + -0.1 5,699,148 - +0.4 5,699,183 + -0.7 5,699,184 - -0.5 5,699,246 + -1.6 5,699,247 - -1.5 5,699,291 + -0.1 5,699,291 + +1.3 5,699,291 + -0.8 5,699,291 + +0.3 5,699,291 + -1.0 5,699,291 + -1.3 5,699,291 + +0.2 5,699,291 + -2.7 5,699,291 + -0.7 5,699,292 - -0.2 5,699,292 - +0.6 5,699,292 - +0.1 5,699,292 - +0.1 5,699,292 - +0.4 5,699,292 - -0.5 5,699,292 - -1.3 5,699,292 - +0.2 5,699,292 - +0.2 5,699,344 + +0.9 5,699,344 + -0.3 5,699,344 + -0.2 5,699,344 + -2.0 5,699,344 + -0.8 5,699,344 + -0.7 5,699,344 + +1.5 5,699,344 + +0.1 5,699,344 + -0.7 5,699,345 - +1.3 5,699,345 - -0.7
Or see this region's nucleotide sequence