Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05925

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_05915 and AO353_05920 overlap by 11 nucleotidesAO353_05920 and AO353_05925 are separated by 87 nucleotidesAO353_05925 and AO353_05930 are separated by 58 nucleotides AO353_05915: AO353_05915 - antibiotic biosynthesis monooxygenase, at 1,314,848 to 1,315,162 _05915 AO353_05920: AO353_05920 - hypothetical protein, at 1,315,152 to 1,315,916 _05920 AO353_05925: AO353_05925 - LysR family transcriptional regulator, at 1,316,004 to 1,316,903 _05925 AO353_05930: AO353_05930 - L-tryptophan transporter (from data), at 1,316,962 to 1,318,374 _05930 Position (kb) 1316 1317Strain fitness (log2 ratio) -2 -1 0 1 2at 1315.006 kb on + strand, within AO353_05915at 1315.006 kb on + strand, within AO353_05915at 1315.006 kb on + strand, within AO353_05915at 1315.006 kb on + strand, within AO353_05915at 1315.006 kb on + strand, within AO353_05915at 1315.007 kb on - strand, within AO353_05915at 1315.007 kb on - strand, within AO353_05915at 1315.007 kb on - strand, within AO353_05915at 1315.013 kb on + strand, within AO353_05915at 1315.014 kb on - strand, within AO353_05915at 1315.014 kb on - strand, within AO353_05915at 1315.097 kb on + strand, within AO353_05915at 1315.183 kb on - strandat 1315.183 kb on - strandat 1315.423 kb on + strand, within AO353_05920at 1315.423 kb on + strand, within AO353_05920at 1315.424 kb on - strand, within AO353_05920at 1315.424 kb on - strand, within AO353_05920at 1315.514 kb on + strand, within AO353_05920at 1315.514 kb on + strand, within AO353_05920at 1315.514 kb on + strand, within AO353_05920at 1315.517 kb on + strand, within AO353_05920at 1315.518 kb on - strand, within AO353_05920at 1315.518 kb on - strand, within AO353_05920at 1315.558 kb on + strand, within AO353_05920at 1315.558 kb on + strand, within AO353_05920at 1315.559 kb on - strand, within AO353_05920at 1315.559 kb on - strand, within AO353_05920at 1315.559 kb on - strand, within AO353_05920at 1315.559 kb on - strand, within AO353_05920at 1315.559 kb on - strand, within AO353_05920at 1315.567 kb on - strand, within AO353_05920at 1315.648 kb on - strand, within AO353_05920at 1315.648 kb on - strand, within AO353_05920at 1315.648 kb on - strand, within AO353_05920at 1315.648 kb on - strand, within AO353_05920at 1315.648 kb on - strand, within AO353_05920at 1315.721 kb on + strand, within AO353_05920at 1315.866 kb on + strandat 1315.894 kb on + strandat 1315.894 kb on + strandat 1315.895 kb on - strandat 1315.895 kb on - strandat 1315.895 kb on - strandat 1315.910 kb on + strandat 1315.910 kb on + strandat 1315.910 kb on + strandat 1315.910 kb on + strandat 1315.911 kb on - strandat 1315.911 kb on - strandat 1315.911 kb on - strandat 1315.959 kb on + strandat 1315.959 kb on + strandat 1315.959 kb on + strandat 1315.960 kb on - strandat 1315.960 kb on - strandat 1315.960 kb on - strandat 1315.960 kb on - strandat 1315.960 kb on - strandat 1315.961 kb on + strandat 1315.961 kb on + strandat 1315.961 kb on + strandat 1315.961 kb on + strandat 1315.961 kb on + strandat 1315.961 kb on + strandat 1315.962 kb on - strandat 1315.962 kb on - strandat 1315.962 kb on - strandat 1315.962 kb on - strandat 1315.962 kb on - strandat 1315.962 kb on - strandat 1316.034 kb on + strandat 1316.142 kb on - strand, within AO353_05925at 1316.142 kb on - strand, within AO353_05925at 1316.262 kb on + strand, within AO353_05925at 1316.322 kb on + strand, within AO353_05925at 1316.322 kb on + strand, within AO353_05925at 1316.322 kb on + strand, within AO353_05925at 1316.323 kb on - strand, within AO353_05925at 1316.323 kb on - strand, within AO353_05925at 1316.416 kb on + strand, within AO353_05925at 1316.416 kb on + strand, within AO353_05925at 1316.416 kb on + strand, within AO353_05925at 1316.416 kb on + strand, within AO353_05925at 1316.416 kb on + strand, within AO353_05925at 1316.416 kb on + strand, within AO353_05925at 1316.417 kb on - strand, within AO353_05925at 1316.417 kb on - strand, within AO353_05925at 1316.580 kb on + strand, within AO353_05925at 1316.581 kb on - strand, within AO353_05925at 1316.581 kb on - strand, within AO353_05925at 1316.581 kb on - strand, within AO353_05925at 1316.581 kb on - strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.616 kb on + strand, within AO353_05925at 1316.617 kb on - strand, within AO353_05925at 1316.617 kb on - strand, within AO353_05925at 1316.812 kb on + strand, within AO353_05925at 1316.812 kb on + strand, within AO353_05925at 1316.812 kb on + strand, within AO353_05925at 1316.812 kb on + strand, within AO353_05925at 1316.812 kb on + strand, within AO353_05925at 1316.812 kb on + strand, within AO353_05925at 1316.813 kb on - strand, within AO353_05925at 1316.813 kb on - strand, within AO353_05925at 1316.813 kb on - strand, within AO353_05925at 1316.901 kb on + strandat 1316.901 kb on + strandat 1316.902 kb on - strandat 1316.902 kb on - strandat 1317.026 kb on + strandat 1317.064 kb on + strandat 1317.064 kb on + strandat 1317.064 kb on + strandat 1317.064 kb on + strandat 1317.064 kb on + strandat 1317.065 kb on - strandat 1317.065 kb on - strandat 1317.065 kb on - strandat 1317.065 kb on - strandat 1317.065 kb on - strandat 1317.095 kb on + strandat 1317.095 kb on + strandat 1317.095 kb on + strandat 1317.095 kb on + strandat 1317.095 kb on + strandat 1317.096 kb on - strandat 1317.096 kb on - strandat 1317.096 kb on - strandat 1317.096 kb on - strandat 1317.096 kb on - strandat 1317.096 kb on - strandat 1317.096 kb on - strandat 1317.096 kb on - strandat 1317.096 kb on - strandat 1317.146 kb on + strand, within AO353_05930at 1317.146 kb on + strand, within AO353_05930at 1317.147 kb on - strand, within AO353_05930at 1317.200 kb on + strand, within AO353_05930at 1317.215 kb on + strand, within AO353_05930at 1317.216 kb on - strand, within AO353_05930at 1317.216 kb on - strand, within AO353_05930at 1317.299 kb on + strand, within AO353_05930at 1317.300 kb on - strand, within AO353_05930at 1317.300 kb on - strand, within AO353_05930at 1317.446 kb on + strand, within AO353_05930at 1317.446 kb on + strand, within AO353_05930at 1317.446 kb on + strand, within AO353_05930at 1317.446 kb on + strand, within AO353_05930at 1317.446 kb on + strand, within AO353_05930at 1317.446 kb on + strand, within AO353_05930at 1317.447 kb on - strand, within AO353_05930at 1317.447 kb on - strand, within AO353_05930at 1317.447 kb on - strand, within AO353_05930at 1317.447 kb on - strand, within AO353_05930at 1317.447 kb on - strand, within AO353_05930at 1317.447 kb on - strand, within AO353_05930at 1317.614 kb on + strand, within AO353_05930at 1317.614 kb on + strand, within AO353_05930at 1317.614 kb on + strand, within AO353_05930at 1317.614 kb on + strand, within AO353_05930at 1317.615 kb on - strand, within AO353_05930at 1317.615 kb on - strand, within AO353_05930at 1317.615 kb on - strand, within AO353_05930at 1317.719 kb on + strand, within AO353_05930at 1317.719 kb on + strand, within AO353_05930at 1317.720 kb on - strand, within AO353_05930at 1317.720 kb on - strand, within AO353_05930at 1317.720 kb on - strand, within AO353_05930at 1317.794 kb on + strand, within AO353_05930at 1317.794 kb on + strand, within AO353_05930at 1317.794 kb on + strand, within AO353_05930at 1317.794 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.839 kb on + strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.840 kb on - strand, within AO353_05930at 1317.896 kb on + strand, within AO353_05930at 1317.896 kb on + strand, within AO353_05930at 1317.896 kb on + strand, within AO353_05930at 1317.897 kb on - strand, within AO353_05930at 1317.897 kb on - strand, within AO353_05930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
1,315,006 + AO353_05915 0.50 +1.4
1,315,006 + AO353_05915 0.50 +0.6
1,315,006 + AO353_05915 0.50 -0.4
1,315,006 + AO353_05915 0.50 -0.3
1,315,006 + AO353_05915 0.50 +0.8
1,315,007 - AO353_05915 0.50 +0.4
1,315,007 - AO353_05915 0.50 -0.4
1,315,007 - AO353_05915 0.50 -0.6
1,315,013 + AO353_05915 0.52 -1.9
1,315,014 - AO353_05915 0.53 +0.0
1,315,014 - AO353_05915 0.53 +1.3
1,315,097 + AO353_05915 0.79 -0.4
1,315,183 - +1.0
1,315,183 - +0.9
1,315,423 + AO353_05920 0.35 -1.2
1,315,423 + AO353_05920 0.35 -0.0
1,315,424 - AO353_05920 0.36 +0.8
1,315,424 - AO353_05920 0.36 +0.5
1,315,514 + AO353_05920 0.47 +0.3
1,315,514 + AO353_05920 0.47 +0.7
1,315,514 + AO353_05920 0.47 +0.6
1,315,517 + AO353_05920 0.48 +0.5
1,315,518 - AO353_05920 0.48 -0.3
1,315,518 - AO353_05920 0.48 +0.1
1,315,558 + AO353_05920 0.53 +0.1
1,315,558 + AO353_05920 0.53 -0.2
1,315,559 - AO353_05920 0.53 -0.5
1,315,559 - AO353_05920 0.53 -0.8
1,315,559 - AO353_05920 0.53 +0.3
1,315,559 - AO353_05920 0.53 +0.1
1,315,559 - AO353_05920 0.53 +0.4
1,315,567 - AO353_05920 0.54 +1.3
1,315,648 - AO353_05920 0.65 -0.6
1,315,648 - AO353_05920 0.65 +0.2
1,315,648 - AO353_05920 0.65 +0.1
1,315,648 - AO353_05920 0.65 +0.1
1,315,648 - AO353_05920 0.65 -1.2
1,315,721 + AO353_05920 0.74 +0.1
1,315,866 + -0.7
1,315,894 + -1.8
1,315,894 + -0.5
1,315,895 - +0.1
1,315,895 - -0.1
1,315,895 - +0.2
1,315,910 + +0.6
1,315,910 + +0.0
1,315,910 + -0.3
1,315,910 + +0.3
1,315,911 - -0.2
1,315,911 - -0.1
1,315,911 - +0.9
1,315,959 + +1.9
1,315,959 + -0.1
1,315,959 + +0.1
1,315,960 - +0.3
1,315,960 - -0.5
1,315,960 - -0.1
1,315,960 - -0.3
1,315,960 - +1.5
1,315,961 + -0.7
1,315,961 + +0.1
1,315,961 + +0.9
1,315,961 + -0.6
1,315,961 + +0.5
1,315,961 + -0.2
1,315,962 - +0.2
1,315,962 - -2.1
1,315,962 - +0.8
1,315,962 - +0.1
1,315,962 - -0.7
1,315,962 - -0.3
1,316,034 + +1.1
1,316,142 - AO353_05925 0.15 -0.2
1,316,142 - AO353_05925 0.15 -0.2
1,316,262 + AO353_05925 0.29 -0.2
1,316,322 + AO353_05925 0.35 +0.1
1,316,322 + AO353_05925 0.35 -1.7
1,316,322 + AO353_05925 0.35 -0.4
1,316,323 - AO353_05925 0.35 -1.4
1,316,323 - AO353_05925 0.35 +0.2
1,316,416 + AO353_05925 0.46 +0.4
1,316,416 + AO353_05925 0.46 -1.0
1,316,416 + AO353_05925 0.46 +0.3
1,316,416 + AO353_05925 0.46 +0.2
1,316,416 + AO353_05925 0.46 -0.1
1,316,416 + AO353_05925 0.46 -0.9
1,316,417 - AO353_05925 0.46 -0.9
1,316,417 - AO353_05925 0.46 -0.4
1,316,580 + AO353_05925 0.64 -0.5
1,316,581 - AO353_05925 0.64 -0.2
1,316,581 - AO353_05925 0.64 +0.2
1,316,581 - AO353_05925 0.64 -0.4
1,316,581 - AO353_05925 0.64 -0.9
1,316,616 + AO353_05925 0.68 +0.2
1,316,616 + AO353_05925 0.68 +0.5
1,316,616 + AO353_05925 0.68 -0.4
1,316,616 + AO353_05925 0.68 -0.4
1,316,616 + AO353_05925 0.68 +0.3
1,316,616 + AO353_05925 0.68 -0.1
1,316,616 + AO353_05925 0.68 -0.5
1,316,616 + AO353_05925 0.68 +0.8
1,316,616 + AO353_05925 0.68 +1.2
1,316,616 + AO353_05925 0.68 -0.3
1,316,616 + AO353_05925 0.68 -0.1
1,316,617 - AO353_05925 0.68 -0.7
1,316,617 - AO353_05925 0.68 -0.5
1,316,812 + AO353_05925 0.90 -0.2
1,316,812 + AO353_05925 0.90 -0.3
1,316,812 + AO353_05925 0.90 -0.6
1,316,812 + AO353_05925 0.90 -0.1
1,316,812 + AO353_05925 0.90 -0.5
1,316,812 + AO353_05925 0.90 +0.5
1,316,813 - AO353_05925 0.90 +0.4
1,316,813 - AO353_05925 0.90 -1.3
1,316,813 - AO353_05925 0.90 +0.7
1,316,901 + +0.6
1,316,901 + -0.1
1,316,902 - -0.4
1,316,902 - -0.1
1,317,026 + +0.4
1,317,064 + +1.4
1,317,064 + +1.4
1,317,064 + -0.4
1,317,064 + -0.5
1,317,064 + -1.1
1,317,065 - +0.3
1,317,065 - +0.8
1,317,065 - +0.9
1,317,065 - +0.3
1,317,065 - +0.1
1,317,095 + -0.5
1,317,095 + +0.1
1,317,095 + +0.1
1,317,095 + +0.7
1,317,095 + -0.4
1,317,096 - -2.0
1,317,096 - +0.8
1,317,096 - -0.7
1,317,096 - -1.2
1,317,096 - -0.8
1,317,096 - +0.3
1,317,096 - -1.4
1,317,096 - +0.5
1,317,096 - -0.3
1,317,146 + AO353_05930 0.13 +0.1
1,317,146 + AO353_05930 0.13 -1.2
1,317,147 - AO353_05930 0.13 +0.0
1,317,200 + AO353_05930 0.17 -0.0
1,317,215 + AO353_05930 0.18 -0.3
1,317,216 - AO353_05930 0.18 +0.8
1,317,216 - AO353_05930 0.18 +0.4
1,317,299 + AO353_05930 0.24 -0.3
1,317,300 - AO353_05930 0.24 -0.7
1,317,300 - AO353_05930 0.24 +0.9
1,317,446 + AO353_05930 0.34 -0.7
1,317,446 + AO353_05930 0.34 -1.9
1,317,446 + AO353_05930 0.34 -0.4
1,317,446 + AO353_05930 0.34 +1.0
1,317,446 + AO353_05930 0.34 +1.0
1,317,446 + AO353_05930 0.34 +0.5
1,317,447 - AO353_05930 0.34 +0.6
1,317,447 - AO353_05930 0.34 +0.2
1,317,447 - AO353_05930 0.34 -0.7
1,317,447 - AO353_05930 0.34 -0.1
1,317,447 - AO353_05930 0.34 +2.4
1,317,447 - AO353_05930 0.34 +0.1
1,317,614 + AO353_05930 0.46 +0.4
1,317,614 + AO353_05930 0.46 +0.3
1,317,614 + AO353_05930 0.46 +0.6
1,317,614 + AO353_05930 0.46 -0.4
1,317,615 - AO353_05930 0.46 -0.4
1,317,615 - AO353_05930 0.46 +1.7
1,317,615 - AO353_05930 0.46 -0.4
1,317,719 + AO353_05930 0.54 -0.3
1,317,719 + AO353_05930 0.54 -0.5
1,317,720 - AO353_05930 0.54 -0.0
1,317,720 - AO353_05930 0.54 -0.7
1,317,720 - AO353_05930 0.54 -0.0
1,317,794 + AO353_05930 0.59 -0.5
1,317,794 + AO353_05930 0.59 +0.3
1,317,794 + AO353_05930 0.59 -0.1
1,317,794 + AO353_05930 0.59 -0.6
1,317,839 + AO353_05930 0.62 +1.1
1,317,839 + AO353_05930 0.62 -0.6
1,317,839 + AO353_05930 0.62 +0.2
1,317,839 + AO353_05930 0.62 -1.8
1,317,839 + AO353_05930 0.62 -0.1
1,317,839 + AO353_05930 0.62 +0.5
1,317,839 + AO353_05930 0.62 -0.4
1,317,839 + AO353_05930 0.62 -0.4
1,317,839 + AO353_05930 0.62 -0.1
1,317,839 + AO353_05930 0.62 +0.1
1,317,839 + AO353_05930 0.62 -0.1
1,317,839 + AO353_05930 0.62 +0.7
1,317,840 - AO353_05930 0.62 -0.5
1,317,840 - AO353_05930 0.62 +0.5
1,317,840 - AO353_05930 0.62 -1.7
1,317,840 - AO353_05930 0.62 -0.9
1,317,840 - AO353_05930 0.62 +0.2
1,317,840 - AO353_05930 0.62 +0.4
1,317,840 - AO353_05930 0.62 -1.1
1,317,840 - AO353_05930 0.62 +0.6
1,317,840 - AO353_05930 0.62 -0.3
1,317,896 + AO353_05930 0.66 +1.2
1,317,896 + AO353_05930 0.66 -0.8
1,317,896 + AO353_05930 0.66 -0.3
1,317,897 - AO353_05930 0.66 +1.2
1,317,897 - AO353_05930 0.66 +0.3

Or see this region's nucleotide sequence