Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03985

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03980 and AO353_03985 are separated by 42 nucleotidesAO353_03985 and AO353_03990 are separated by 14 nucleotides AO353_03980: AO353_03980 - thiol oxidoreductase, at 854,460 to 855,887 _03980 AO353_03985: AO353_03985 - imelysin, at 855,930 to 856,994 _03985 AO353_03990: AO353_03990 - hypothetical protein, at 857,009 to 858,106 _03990 Position (kb) 855 856 857Strain fitness (log2 ratio) -2 -1 0 1 2at 854.967 kb on + strand, within AO353_03980at 854.967 kb on + strand, within AO353_03980at 854.967 kb on + strand, within AO353_03980at 854.968 kb on - strand, within AO353_03980at 854.968 kb on - strand, within AO353_03980at 854.991 kb on - strand, within AO353_03980at 855.017 kb on + strand, within AO353_03980at 855.018 kb on - strand, within AO353_03980at 855.018 kb on - strand, within AO353_03980at 855.314 kb on + strand, within AO353_03980at 855.315 kb on - strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.443 kb on + strand, within AO353_03980at 855.450 kb on - strand, within AO353_03980at 855.516 kb on + strand, within AO353_03980at 855.516 kb on + strand, within AO353_03980at 855.517 kb on - strand, within AO353_03980at 855.517 kb on - strand, within AO353_03980at 855.517 kb on - strand, within AO353_03980at 855.609 kb on + strand, within AO353_03980at 855.610 kb on - strand, within AO353_03980at 855.832 kb on + strandat 856.050 kb on + strand, within AO353_03985at 856.050 kb on + strand, within AO353_03985at 856.050 kb on + strand, within AO353_03985at 856.051 kb on - strand, within AO353_03985at 856.051 kb on - strand, within AO353_03985at 856.101 kb on + strand, within AO353_03985at 856.351 kb on - strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.807 kb on - strand, within AO353_03985at 856.899 kb on + strandat 856.899 kb on + strandat 856.899 kb on + strandat 856.899 kb on + strandat 856.899 kb on + strandat 856.900 kb on - strandat 857.034 kb on + strandat 857.034 kb on + strandat 857.144 kb on + strand, within AO353_03990at 857.145 kb on - strand, within AO353_03990at 857.145 kb on - strand, within AO353_03990at 857.276 kb on + strand, within AO353_03990at 857.276 kb on + strand, within AO353_03990at 857.276 kb on + strand, within AO353_03990at 857.276 kb on + strand, within AO353_03990at 857.276 kb on + strand, within AO353_03990at 857.276 kb on + strand, within AO353_03990at 857.277 kb on - strand, within AO353_03990at 857.277 kb on - strand, within AO353_03990at 857.277 kb on - strand, within AO353_03990at 857.277 kb on - strand, within AO353_03990at 857.277 kb on - strand, within AO353_03990at 857.277 kb on - strand, within AO353_03990at 857.277 kb on - strand, within AO353_03990at 857.277 kb on - strand, within AO353_03990at 857.342 kb on + strand, within AO353_03990at 857.342 kb on + strand, within AO353_03990at 857.343 kb on - strand, within AO353_03990at 857.357 kb on - strand, within AO353_03990at 857.357 kb on - strand, within AO353_03990at 857.362 kb on + strand, within AO353_03990at 857.362 kb on + strand, within AO353_03990at 857.362 kb on + strand, within AO353_03990at 857.362 kb on + strand, within AO353_03990at 857.362 kb on + strand, within AO353_03990at 857.363 kb on - strand, within AO353_03990at 857.363 kb on - strand, within AO353_03990at 857.381 kb on + strand, within AO353_03990at 857.382 kb on - strand, within AO353_03990at 857.433 kb on - strand, within AO353_03990at 857.607 kb on + strand, within AO353_03990at 857.608 kb on - strand, within AO353_03990at 857.608 kb on - strand, within AO353_03990at 857.608 kb on - strand, within AO353_03990at 857.608 kb on - strand, within AO353_03990at 857.831 kb on + strand, within AO353_03990at 857.831 kb on + strand, within AO353_03990

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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854,967 + AO353_03980 0.36 +0.5
854,967 + AO353_03980 0.36 -0.4
854,967 + AO353_03980 0.36 -0.1
854,968 - AO353_03980 0.36 +0.1
854,968 - AO353_03980 0.36 -0.5
854,991 - AO353_03980 0.37 -0.4
855,017 + AO353_03980 0.39 +0.1
855,018 - AO353_03980 0.39 +0.3
855,018 - AO353_03980 0.39 +0.5
855,314 + AO353_03980 0.60 +0.7
855,315 - AO353_03980 0.60 -0.8
855,441 + AO353_03980 0.69 +0.3
855,441 + AO353_03980 0.69 -0.4
855,441 + AO353_03980 0.69 -0.8
855,441 + AO353_03980 0.69 +0.4
855,441 + AO353_03980 0.69 -0.4
855,442 - AO353_03980 0.69 -0.1
855,442 - AO353_03980 0.69 -0.7
855,442 - AO353_03980 0.69 -1.3
855,442 - AO353_03980 0.69 -0.7
855,442 - AO353_03980 0.69 +0.2
855,442 - AO353_03980 0.69 -0.8
855,442 - AO353_03980 0.69 -0.1
855,442 - AO353_03980 0.69 +1.8
855,442 - AO353_03980 0.69 -2.6
855,442 - AO353_03980 0.69 -1.5
855,442 - AO353_03980 0.69 -0.7
855,443 + AO353_03980 0.69 -2.1
855,450 - AO353_03980 0.69 +0.1
855,516 + AO353_03980 0.74 -1.2
855,516 + AO353_03980 0.74 -0.0
855,517 - AO353_03980 0.74 -0.4
855,517 - AO353_03980 0.74 +0.4
855,517 - AO353_03980 0.74 +1.3
855,609 + AO353_03980 0.80 +0.2
855,610 - AO353_03980 0.81 -0.4
855,832 + +0.1
856,050 + AO353_03985 0.11 +0.2
856,050 + AO353_03985 0.11 -1.6
856,050 + AO353_03985 0.11 -0.2
856,051 - AO353_03985 0.11 -1.5
856,051 - AO353_03985 0.11 -0.8
856,101 + AO353_03985 0.16 -2.4
856,351 - AO353_03985 0.40 -0.5
856,356 + AO353_03985 0.40 +0.6
856,356 + AO353_03985 0.40 -0.2
856,356 + AO353_03985 0.40 -1.1
856,356 + AO353_03985 0.40 -0.7
856,356 + AO353_03985 0.40 -1.5
856,356 + AO353_03985 0.40 -0.8
856,356 + AO353_03985 0.40 -0.2
856,356 + AO353_03985 0.40 +0.5
856,357 - AO353_03985 0.40 -0.5
856,357 - AO353_03985 0.40 -0.1
856,357 - AO353_03985 0.40 -0.3
856,357 - AO353_03985 0.40 +0.1
856,357 - AO353_03985 0.40 -1.3
856,357 - AO353_03985 0.40 -1.5
856,807 - AO353_03985 0.82 -1.3
856,899 + -0.9
856,899 + -0.1
856,899 + -0.1
856,899 + -0.7
856,899 + -0.8
856,900 - -0.7
857,034 + -0.2
857,034 + -0.5
857,144 + AO353_03990 0.12 -0.1
857,145 - AO353_03990 0.12 -0.8
857,145 - AO353_03990 0.12 +0.4
857,276 + AO353_03990 0.24 -0.2
857,276 + AO353_03990 0.24 +0.0
857,276 + AO353_03990 0.24 +1.2
857,276 + AO353_03990 0.24 -0.7
857,276 + AO353_03990 0.24 -0.1
857,276 + AO353_03990 0.24 -1.3
857,277 - AO353_03990 0.24 -0.4
857,277 - AO353_03990 0.24 -2.3
857,277 - AO353_03990 0.24 -1.4
857,277 - AO353_03990 0.24 -0.8
857,277 - AO353_03990 0.24 +0.7
857,277 - AO353_03990 0.24 -0.3
857,277 - AO353_03990 0.24 -1.7
857,277 - AO353_03990 0.24 -1.2
857,342 + AO353_03990 0.30 -1.4
857,342 + AO353_03990 0.30 +0.0
857,343 - AO353_03990 0.30 +0.5
857,357 - AO353_03990 0.32 -0.7
857,357 - AO353_03990 0.32 +0.7
857,362 + AO353_03990 0.32 +0.1
857,362 + AO353_03990 0.32 -0.4
857,362 + AO353_03990 0.32 +0.9
857,362 + AO353_03990 0.32 +0.7
857,362 + AO353_03990 0.32 -0.4
857,363 - AO353_03990 0.32 -0.1
857,363 - AO353_03990 0.32 -0.3
857,381 + AO353_03990 0.34 -1.2
857,382 - AO353_03990 0.34 +0.2
857,433 - AO353_03990 0.39 +0.2
857,607 + AO353_03990 0.54 -0.5
857,608 - AO353_03990 0.55 -1.4
857,608 - AO353_03990 0.55 +0.2
857,608 - AO353_03990 0.55 +0.1
857,608 - AO353_03990 0.55 +1.3
857,831 + AO353_03990 0.75 +1.0
857,831 + AO353_03990 0.75 -0.3

Or see this region's nucleotide sequence