Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00960 and MMP_RS00965 are separated by 2 nucleotides MMP_RS00965 and MMP_RS00970 are separated by 81 nucleotides MMP_RS00970 and MMP_RS00975 overlap by 4 nucleotides
MMP_RS00960: MMP_RS00960 - iron export ABC transporter permease subunit FetB, at 179,382 to 180,128
_RS00960
MMP_RS00965: MMP_RS00965 - hypothetical protein, at 180,131 to 180,415
_RS00965
MMP_RS00970: MMP_RS00970 - coenzyme F430 synthase, at 180,497 to 181,699
_RS00970
MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072
_RS00975
Position (kb) 180
181
182 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 179.573 kb on - strand, within MMP_RS00960 at 179.740 kb on + strand, within MMP_RS00960 at 179.889 kb on + strand, within MMP_RS00960 at 179.959 kb on - strand, within MMP_RS00960 at 180.064 kb on - strand at 180.382 kb on - strand, within MMP_RS00965 at 180.382 kb on - strand, within MMP_RS00965 at 180.385 kb on - strand, within MMP_RS00965 at 180.407 kb on - strand at 180.407 kb on - strand at 180.408 kb on + strand at 180.420 kb on + strand at 180.447 kb on + strand at 180.632 kb on + strand at 180.924 kb on - strand at 180.933 kb on - strand at 181.086 kb on - strand at 181.086 kb on - strand at 181.149 kb on - strand at 181.151 kb on - strand at 181.152 kb on + strand at 181.291 kb on + strand at 181.406 kb on + strand at 181.434 kb on - strand at 181.464 kb on - strand at 181.482 kb on - strand at 181.501 kb on + strand at 181.621 kb on - strand at 181.636 kb on + strand at 181.666 kb on - strand at 181.731 kb on - strand at 181.883 kb on + strand, within MMP_RS00975 at 181.896 kb on - strand, within MMP_RS00975 at 182.019 kb on + strand, within MMP_RS00975 at 182.091 kb on - strand, within MMP_RS00975 at 182.092 kb on + strand, within MMP_RS00975 at 182.132 kb on + strand, within MMP_RS00975 at 182.198 kb on + strand, within MMP_RS00975 at 182.281 kb on - strand, within MMP_RS00975 at 182.293 kb on + strand, within MMP_RS00975 at 182.328 kb on - strand, within MMP_RS00975 at 182.328 kb on - strand, within MMP_RS00975 at 182.329 kb on + strand, within MMP_RS00975 at 182.332 kb on - strand, within MMP_RS00975 at 182.359 kb on - strand, within MMP_RS00975 at 182.399 kb on + strand, within MMP_RS00975 at 182.579 kb on + strand, within MMP_RS00975 at 182.621 kb on + strand, within MMP_RS00975 at 182.696 kb on + strand, within MMP_RS00975
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse2; 20 generations remove 179,573 - MMP_RS00960 0.26 -0.0 179,740 + MMP_RS00960 0.48 +0.3 179,889 + MMP_RS00960 0.68 -0.1 179,959 - MMP_RS00960 0.77 +0.1 180,064 - -0.1 180,382 - MMP_RS00965 0.88 -0.0 180,382 - MMP_RS00965 0.88 +0.3 180,385 - MMP_RS00965 0.89 -0.2 180,407 - -0.1 180,407 - +0.5 180,408 + +0.1 180,420 + +0.0 180,447 + -0.0 180,632 + -4.7 180,924 - -4.2 180,933 - -4.6 181,086 - -5.1 181,086 - -4.6 181,149 - -5.0 181,151 - -4.6 181,152 + -6.0 181,291 + -5.2 181,406 + -4.8 181,434 - -4.7 181,464 - -5.7 181,482 - -5.0 181,501 + -2.5 181,621 - -3.8 181,636 + -4.3 181,666 - -4.0 181,731 - -0.0 181,883 + MMP_RS00975 0.14 +0.3 181,896 - MMP_RS00975 0.15 +0.3 182,019 + MMP_RS00975 0.23 +0.3 182,091 - MMP_RS00975 0.29 +0.4 182,092 + MMP_RS00975 0.29 +0.1 182,132 + MMP_RS00975 0.32 +0.0 182,198 + MMP_RS00975 0.36 -0.1 182,281 - MMP_RS00975 0.42 -0.1 182,293 + MMP_RS00975 0.43 +0.2 182,328 - MMP_RS00975 0.46 +0.4 182,328 - MMP_RS00975 0.46 -0.2 182,329 + MMP_RS00975 0.46 +0.1 182,332 - MMP_RS00975 0.46 +0.4 182,359 - MMP_RS00975 0.48 +0.3 182,399 + MMP_RS00975 0.51 -0.3 182,579 + MMP_RS00975 0.64 -0.4 182,621 + MMP_RS00975 0.67 -0.4 182,696 + MMP_RS00975 0.73 +0.1
Or see this region's nucleotide sequence