Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05665

Experiment: H2 pooled triplicate biofilm cells

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 pooled triplicate biofilm cells
1,056,058	-		MMJJ_RS05655	0.60	-3.8
1,056,059	+		MMJJ_RS05655	0.60	-2.0
1,056,059	+		MMJJ_RS05655	0.60	-2.3
1,056,059	+		MMJJ_RS05655	0.60	-1.7
1,056,070	-		MMJJ_RS05655	0.62	-1.5
1,056,161	-		MMJJ_RS05655	0.75	-4.1
1,056,161	-		MMJJ_RS05655	0.75	-2.4
1,056,162	+		MMJJ_RS05655	0.75	-2.0
1,056,189	-		MMJJ_RS05655	0.79	-3.3
1,056,189	-		MMJJ_RS05655	0.79	-2.5
1,056,189	-		MMJJ_RS05655	0.79	-1.7
1,056,189	-		MMJJ_RS05655	0.79	-1.7
1,056,189	-		MMJJ_RS05655	0.79	-0.8
1,056,190	+		MMJJ_RS05655	0.80	-2.7
1,056,190	+		MMJJ_RS05655	0.80	-3.3
1,056,190	+		MMJJ_RS05655	0.80	+1.9
1,056,190	+		MMJJ_RS05655	0.80	-2.8
1,056,206	-		MMJJ_RS05655	0.82	-2.7
1,056,270	+				-3.0
1,056,270	+				-2.7
1,056,275	+				-3.0
1,056,275	+				-2.8
1,056,324	-				+1.7
1,056,324	-				+1.5
1,056,325	+				+0.9
1,056,325	+				-0.3
1,056,328	+				+4.3
1,056,336	-				+0.2
1,056,337	+				+0.3
1,056,386	-		MMJJ_RS05660	0.10	+0.5
1,056,386	-		MMJJ_RS05660	0.10	+0.5
1,056,386	-		MMJJ_RS05660	0.10	+1.0
1,056,426	-		MMJJ_RS05660	0.18	-0.1
1,056,461	-		MMJJ_RS05660	0.24	+0.7
1,056,462	+		MMJJ_RS05660	0.24	+1.9
1,056,462	+		MMJJ_RS05660	0.24	+2.7
1,056,500	-		MMJJ_RS05660	0.31	-0.6
1,056,512	-		MMJJ_RS05660	0.33	-0.2
1,056,524	-		MMJJ_RS05660	0.35	+1.9
1,056,524	-		MMJJ_RS05660	0.35	+2.5
1,056,551	-		MMJJ_RS05660	0.40	+0.3
1,056,552	+		MMJJ_RS05660	0.40	+1.4
1,056,609	+		MMJJ_RS05660	0.50	-1.3
1,056,609	+		MMJJ_RS05660	0.50	+0.1
1,056,609	+		MMJJ_RS05660	0.50	+1.6
1,056,614	-		MMJJ_RS05660	0.51	+1.2
1,056,615	+		MMJJ_RS05660	0.51	+0.5
1,056,615	+		MMJJ_RS05660	0.51	-0.5
1,056,683	+		MMJJ_RS05660	0.64	+1.2
1,056,683	+		MMJJ_RS05660	0.64	+0.2
1,056,683	+		MMJJ_RS05660	0.64	+0.0
1,056,722	-		MMJJ_RS05660	0.71	+0.3
1,056,727	+		MMJJ_RS05660	0.72	+0.6
1,056,761	-		MMJJ_RS05660	0.78	-0.7
1,056,764	-		MMJJ_RS05660	0.78	-0.1
1,056,789	-		MMJJ_RS05660	0.83	+1.0
1,056,790	+		MMJJ_RS05660	0.83	+1.5
1,056,831	+				-0.0
1,056,831	+				-0.0
1,056,831	+				+0.6
1,056,851	-				-2.7
1,056,886	-				-0.5
1,056,890	-				-0.3
1,056,891	+				-0.8
1,056,969	-		MMJJ_RS05665	0.10	-1.0
1,057,070	-		MMJJ_RS05665	0.25	-0.4
1,057,071	+		MMJJ_RS05665	0.25	-1.0
1,057,092	-		MMJJ_RS05665	0.28	+0.7
1,057,092	-		MMJJ_RS05665	0.28	+0.9
1,057,092	-		MMJJ_RS05665	0.28	+3.9
1,057,093	+		MMJJ_RS05665	0.29	+0.1
1,057,115	-		MMJJ_RS05665	0.32	+0.2
1,057,116	+		MMJJ_RS05665	0.32	-0.9
1,057,116	+		MMJJ_RS05665	0.32	+0.3
1,057,116	+		MMJJ_RS05665	0.32	+0.8
1,057,120	-		MMJJ_RS05665	0.32	+0.8
1,057,121	+		MMJJ_RS05665	0.33	-0.2
1,057,124	-		MMJJ_RS05665	0.33	+0.5
1,057,124	-		MMJJ_RS05665	0.33	+0.1
1,057,125	+		MMJJ_RS05665	0.33	+1.0
1,057,125	+		MMJJ_RS05665	0.33	-0.1
1,057,147	+		MMJJ_RS05665	0.36	+1.0
1,057,172	-		MMJJ_RS05665	0.40	+0.1
1,057,172	-		MMJJ_RS05665	0.40	+0.8
1,057,172	-		MMJJ_RS05665	0.40	+0.9
1,057,173	+		MMJJ_RS05665	0.40	+0.3
1,057,261	-		MMJJ_RS05665	0.53	-0.1
1,057,262	+		MMJJ_RS05665	0.53	+1.0
1,057,262	+		MMJJ_RS05665	0.53	+0.5
1,057,278	-		MMJJ_RS05665	0.56	-0.1
1,057,282	-		MMJJ_RS05665	0.56	-0.8
1,057,282	-		MMJJ_RS05665	0.56	+3.1
1,057,325	-		MMJJ_RS05665	0.62	-0.0
1,057,332	-		MMJJ_RS05665	0.63	+0.7
1,057,332	-		MMJJ_RS05665	0.63	+0.9
1,057,449	-		MMJJ_RS05665	0.81	+0.5
1,057,450	+		MMJJ_RS05665	0.81	-0.4
1,057,450	+		MMJJ_RS05665	0.81	-0.3
1,057,460	+		MMJJ_RS05665	0.82	+1.9
1,057,480	-		MMJJ_RS05665	0.85	-0.1
1,057,481	+		MMJJ_RS05665	0.85	+0.2
1,057,516	+				-0.0
1,057,531	-				-1.3
1,057,531	-				+0.5
1,057,531	-				+0.3
1,057,539	+				-0.1
1,057,545	+				+0.3
1,057,896	-				+0.0
1,057,897	+				+0.6
1,057,898	-				+0.3
1,057,899	+				+0.1
1,057,914	-				+0.0
1,057,915	+				-1.0
1,057,943	-		MMJJ_RS05675	0.13	+0.2
1,057,943	-		MMJJ_RS05675	0.13	-1.4
1,057,943	-		MMJJ_RS05675	0.13	-1.8
1,058,059	-		MMJJ_RS05675	0.24	-0.3
1,058,060	+		MMJJ_RS05675	0.24	-0.3
1,058,066	-		MMJJ_RS05675	0.25	-1.4
1,058,066	-		MMJJ_RS05675	0.25	+0.8
1,058,079	-		MMJJ_RS05675	0.26	-0.3
1,058,079	-		MMJJ_RS05675	0.26	+2.9
1,058,080	+		MMJJ_RS05675	0.26	+0.5
1,058,117	-		MMJJ_RS05675	0.30	+1.1
1,058,127	-		MMJJ_RS05675	0.31	+0.2
1,058,128	+		MMJJ_RS05675	0.31	-1.0
1,058,128	+		MMJJ_RS05675	0.31	-2.1
1,058,128	+		MMJJ_RS05675	0.31	-0.9
1,058,134	-		MMJJ_RS05675	0.32	+0.1
1,058,134	-		MMJJ_RS05675	0.32	-1.1
1,058,149	+		MMJJ_RS05675	0.33	-0.9
1,058,195	-		MMJJ_RS05675	0.38	-1.7
1,058,195	-		MMJJ_RS05675	0.38	-0.1
1,058,195	-		MMJJ_RS05675	0.38	-2.5
1,058,198	+		MMJJ_RS05675	0.38	+0.4
1,058,208	-		MMJJ_RS05675	0.39	-0.8
1,058,252	-		MMJJ_RS05675	0.44	-1.1
1,058,255	-		MMJJ_RS05675	0.44	+3.2
1,058,306	-		MMJJ_RS05675	0.49	-3.0
1,058,329	-		MMJJ_RS05675	0.51	-2.0
1,058,330	+		MMJJ_RS05675	0.51	+0.1
1,058,330	+		MMJJ_RS05675	0.51	-0.0
1,058,330	+		MMJJ_RS05675	0.51	-1.5
1,058,330	+		MMJJ_RS05675	0.51	-1.9
1,058,354	-		MMJJ_RS05675	0.54	+0.3
1,058,355	+		MMJJ_RS05675	0.54	+0.4
1,058,358	-		MMJJ_RS05675	0.54	-1.7
1,058,363	-		MMJJ_RS05675	0.55	-0.3
1,058,364	+		MMJJ_RS05675	0.55	+4.6
1,058,468	-		MMJJ_RS05675	0.65	+5.1
1,058,469	+		MMJJ_RS05675	0.65	-2.0
1,058,504	-		MMJJ_RS05675	0.69	-0.8
1,058,504	-		MMJJ_RS05675	0.69	-2.8
1,058,532	-		MMJJ_RS05675	0.72	-1.4
1,058,532	-		MMJJ_RS05675	0.72	+1.3
1,058,532	-		MMJJ_RS05675	0.72	+0.9
1,058,532	-		MMJJ_RS05675	0.72	+0.6
1,058,532	-		MMJJ_RS05675	0.72	-0.7
1,058,533	+		MMJJ_RS05675	0.72	+0.7
1,058,533	+		MMJJ_RS05675	0.72	+3.1
1,058,533	+		MMJJ_RS05675	0.72	-0.3
1,058,533	+		MMJJ_RS05675	0.72	-1.3
1,058,533	+		MMJJ_RS05675	0.72	+0.6
1,058,536	-		MMJJ_RS05675	0.72	+0.3
1,058,536	-		MMJJ_RS05675	0.72	-0.6
1,058,536	-		MMJJ_RS05675	0.72	-0.4