Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12685

Experiment: R2A with Manganese (II) chloride tetrahydrate 0.15625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 0.15625 mM
2,836,057	+		LRK54_RS12680	0.39	-0.8
2,836,057	+		LRK54_RS12680	0.39	+0.3
2,836,057	+		LRK54_RS12680	0.39	-0.8
2,836,057	+		LRK54_RS12680	0.39	-2.5
2,836,058	-		LRK54_RS12680	0.39	+0.2
2,836,058	-		LRK54_RS12680	0.39	+0.4
2,836,058	-		LRK54_RS12680	0.39	+0.4
2,836,058	-		LRK54_RS12680	0.39	-0.3
2,836,166	+		LRK54_RS12680	0.48	-2.3
2,836,166	+		LRK54_RS12680	0.48	+0.4
2,836,166	+		LRK54_RS12680	0.48	-1.1
2,836,166	+		LRK54_RS12680	0.48	-1.9
2,836,166	+		LRK54_RS12680	0.48	-0.4
2,836,166	+		LRK54_RS12680	0.48	-0.9
2,836,166	+		LRK54_RS12680	0.48	+0.4
2,836,166	+		LRK54_RS12680	0.48	-0.8
2,836,166	+		LRK54_RS12680	0.48	-0.6
2,836,166	+		LRK54_RS12680	0.48	-0.8
2,836,167	-		LRK54_RS12680	0.48	-0.3
2,836,167	-		LRK54_RS12680	0.48	-0.6
2,836,167	-		LRK54_RS12680	0.48	-0.3
2,836,167	-		LRK54_RS12680	0.48	+0.2
2,836,167	-		LRK54_RS12680	0.48	+0.2
2,836,167	-		LRK54_RS12680	0.48	-0.2
2,836,195	+		LRK54_RS12680	0.50	-0.8
2,836,196	-		LRK54_RS12680	0.50	-0.5
2,836,196	-		LRK54_RS12680	0.50	-0.4
2,836,270	+		LRK54_RS12680	0.56	-0.5
2,836,270	+		LRK54_RS12680	0.56	+0.7
2,836,270	+		LRK54_RS12680	0.56	+1.7
2,836,270	+		LRK54_RS12680	0.56	-0.2
2,836,270	+		LRK54_RS12680	0.56	+0.1
2,836,270	+		LRK54_RS12680	0.56	-1.1
2,836,270	+		LRK54_RS12680	0.56	-0.1
2,836,270	+		LRK54_RS12680	0.56	+0.6
2,836,270	+		LRK54_RS12680	0.56	+0.9
2,836,271	-		LRK54_RS12680	0.56	-0.4
2,836,271	-		LRK54_RS12680	0.56	-1.9
2,836,271	-		LRK54_RS12680	0.56	+0.7
2,836,271	-		LRK54_RS12680	0.56	-0.7
2,836,271	-		LRK54_RS12680	0.56	-0.4
2,836,271	-		LRK54_RS12680	0.56	-0.7
2,836,271	-		LRK54_RS12680	0.56	-1.3
2,836,366	+		LRK54_RS12680	0.64	+1.3
2,836,366	+		LRK54_RS12680	0.64	-1.3
2,836,366	+		LRK54_RS12680	0.64	+0.3
2,836,367	-		LRK54_RS12680	0.64	+0.3
2,836,367	-		LRK54_RS12680	0.64	+0.6
2,836,367	-		LRK54_RS12680	0.64	-2.1
2,836,367	-		LRK54_RS12680	0.64	-0.6
2,836,461	+		LRK54_RS12680	0.71	-0.5
2,836,515	-		LRK54_RS12680	0.75	-0.4
2,836,515	-		LRK54_RS12680	0.75	-0.6
2,836,515	-		LRK54_RS12680	0.75	-0.7
2,836,529	+		LRK54_RS12680	0.77	+0.0
2,836,550	+		LRK54_RS12680	0.78	-0.1
2,836,550	+		LRK54_RS12680	0.78	-1.6
2,836,551	-		LRK54_RS12680	0.78	-0.1
2,836,644	-		LRK54_RS12680	0.86	+0.5
2,836,644	-		LRK54_RS12680	0.86	+0.2
2,836,685	+		LRK54_RS12680	0.89	-0.2
2,836,685	+		LRK54_RS12680	0.89	-0.2
2,836,685	+		LRK54_RS12680	0.89	-0.7
2,836,686	-		LRK54_RS12680	0.89	-0.3
2,836,686	-		LRK54_RS12680	0.89	+0.1
2,836,781	+				-0.7
2,836,781	+				+0.1
2,836,781	+				-2.0
2,836,781	+				-1.1
2,836,781	+				-0.8
2,836,782	-				+1.1
2,836,782	-				+0.7
2,836,782	-				-0.3
2,836,968	+				-0.4
2,836,968	+				-0.1
2,836,968	+				-0.3
2,836,968	+				-0.2
2,836,968	+				+0.5
2,836,968	+				-0.3
2,836,969	-				-1.2
2,836,969	-				+0.7
2,836,969	-				-0.2
2,836,969	-				+0.3
2,836,969	-				-0.9
2,836,969	-				-0.1
2,837,347	+		LRK54_RS12685	0.24	-0.4
2,837,347	+		LRK54_RS12685	0.24	-0.2
2,837,347	+		LRK54_RS12685	0.24	+0.7
2,837,347	+		LRK54_RS12685	0.24	+0.5
2,837,347	+		LRK54_RS12685	0.24	+0.4
2,837,347	+		LRK54_RS12685	0.24	+0.6
2,837,348	-		LRK54_RS12685	0.24	-0.9
2,837,348	-		LRK54_RS12685	0.24	-2.3
2,837,348	-		LRK54_RS12685	0.24	-0.3
2,837,348	-		LRK54_RS12685	0.24	+0.3
2,837,427	+		LRK54_RS12685	0.28	-0.8
2,837,427	+		LRK54_RS12685	0.28	-0.9
2,837,427	+		LRK54_RS12685	0.28	-1.0
2,837,428	-		LRK54_RS12685	0.28	-0.5
2,837,428	-		LRK54_RS12685	0.28	-1.3
2,837,428	-		LRK54_RS12685	0.28	-1.2
2,837,428	-		LRK54_RS12685	0.28	-0.2
2,837,428	-		LRK54_RS12685	0.28	-1.4
2,837,441	-		LRK54_RS12685	0.29	-0.5
2,837,476	+		LRK54_RS12685	0.30	-0.5
2,837,476	+		LRK54_RS12685	0.30	-0.2
2,837,476	+		LRK54_RS12685	0.30	-0.9
2,837,476	+		LRK54_RS12685	0.30	-0.2
2,837,476	+		LRK54_RS12685	0.30	-0.5
2,837,476	+		LRK54_RS12685	0.30	+1.0
2,837,476	+		LRK54_RS12685	0.30	+0.1
2,837,476	+		LRK54_RS12685	0.30	-1.5
2,837,476	+		LRK54_RS12685	0.30	+0.2
2,837,476	+		LRK54_RS12685	0.30	+0.6
2,837,476	+		LRK54_RS12685	0.30	+0.1
2,837,476	+		LRK54_RS12685	0.30	-0.7
2,837,477	-		LRK54_RS12685	0.30	-0.5
2,837,477	-		LRK54_RS12685	0.30	-0.2
2,837,477	-		LRK54_RS12685	0.30	-0.7
2,837,477	-		LRK54_RS12685	0.30	-0.4
2,837,477	-		LRK54_RS12685	0.30	-0.6
2,837,477	-		LRK54_RS12685	0.30	-0.5
2,837,477	-		LRK54_RS12685	0.30	-0.2
2,837,477	-		LRK54_RS12685	0.30	+0.5
2,837,477	-		LRK54_RS12685	0.30	-2.1
2,837,477	-		LRK54_RS12685	0.30	-0.7
2,837,477	-		LRK54_RS12685	0.30	+1.5
2,837,477	-		LRK54_RS12685	0.30	-1.7
2,837,477	-		LRK54_RS12685	0.30	-0.4
2,837,477	-		LRK54_RS12685	0.30	-0.2
2,837,663	-		LRK54_RS12685	0.39	+0.3
2,837,772	+		LRK54_RS12685	0.44	-0.5
2,837,772	+		LRK54_RS12685	0.44	-0.4
2,837,772	+		LRK54_RS12685	0.44	-0.0
2,837,772	+		LRK54_RS12685	0.44	-1.1
2,837,772	+		LRK54_RS12685	0.44	+0.0
2,837,772	+		LRK54_RS12685	0.44	-1.7
2,837,772	+		LRK54_RS12685	0.44	+0.2
2,837,772	+		LRK54_RS12685	0.44	-1.4
2,837,772	+		LRK54_RS12685	0.44	-0.6
2,837,772	+		LRK54_RS12685	0.44	+0.6
2,837,772	+		LRK54_RS12685	0.44	-0.1
2,837,772	+		LRK54_RS12685	0.44	-0.0
2,837,772	+		LRK54_RS12685	0.44	-0.4
2,837,772	+		LRK54_RS12685	0.44	+0.6
2,837,772	+		LRK54_RS12685	0.44	-0.8
2,837,772	+		LRK54_RS12685	0.44	-0.5
2,837,773	-		LRK54_RS12685	0.44	+0.9
2,837,773	-		LRK54_RS12685	0.44	+0.0
2,837,773	-		LRK54_RS12685	0.44	+0.6
2,837,773	-		LRK54_RS12685	0.44	-0.9
2,837,773	-		LRK54_RS12685	0.44	-0.6
2,837,773	-		LRK54_RS12685	0.44	-1.0
2,837,773	-		LRK54_RS12685	0.44	-0.4
2,837,773	-		LRK54_RS12685	0.44	+1.1
2,837,773	-		LRK54_RS12685	0.44	-0.1
2,837,773	-		LRK54_RS12685	0.44	-0.1
2,837,880	+		LRK54_RS12685	0.49	+0.4
2,837,880	+		LRK54_RS12685	0.49	+1.2
2,837,881	-		LRK54_RS12685	0.49	-0.3
2,837,881	-		LRK54_RS12685	0.49	-2.2
2,837,881	-		LRK54_RS12685	0.49	-0.5
2,837,881	-		LRK54_RS12685	0.49	-0.2
2,837,881	-		LRK54_RS12685	0.49	-0.3
2,837,973	+		LRK54_RS12685	0.53	-0.4
2,837,974	-		LRK54_RS12685	0.53	+0.2
2,838,153	+		LRK54_RS12685	0.61	-0.2
2,838,153	+		LRK54_RS12685	0.61	-1.2
2,838,154	-		LRK54_RS12685	0.61	-0.1
2,838,454	+		LRK54_RS12685	0.75	-1.7
2,838,454	+		LRK54_RS12685	0.75	-0.8
2,838,455	-		LRK54_RS12685	0.75	-0.2
2,838,455	-		LRK54_RS12685	0.75	-0.5
2,838,531	+		LRK54_RS12685	0.79	+0.0
2,838,531	+		LRK54_RS12685	0.79	-0.7
2,838,532	-		LRK54_RS12685	0.79	-0.5
2,838,532	-		LRK54_RS12685	0.79	-0.6
2,838,532	-		LRK54_RS12685	0.79	-0.2
2,838,532	-		LRK54_RS12685	0.79	+0.1
2,838,532	-		LRK54_RS12685	0.79	+0.2
2,838,693	+		LRK54_RS12685	0.86	-1.3
2,838,694	-		LRK54_RS12685	0.86	-0.8
2,838,771	+		LRK54_RS12685	0.90	+1.0
2,838,771	+		LRK54_RS12685	0.90	-0.7
2,838,771	+		LRK54_RS12685	0.90	-1.3
2,838,771	+		LRK54_RS12685	0.90	-0.9
2,838,772	-		LRK54_RS12685	0.90	+0.6
2,838,772	-		LRK54_RS12685	0.90	+1.4
2,838,772	-		LRK54_RS12685	0.90	-0.4
2,838,772	-		LRK54_RS12685	0.90	-0.6
2,838,772	-		LRK54_RS12685	0.90	-1.0
2,838,772	-		LRK54_RS12685	0.90	+0.3
2,838,842	+				+0.7
2,838,902	+				-0.0
2,838,902	+				+0.5
2,838,903	-				-0.2
2,839,068	+				-1.0
2,839,068	+				-0.4
2,839,069	-				+0.8
2,839,072	+				+0.9
2,839,073	-				+1.0
2,839,117	+				-1.1
2,839,118	-				-0.6
2,839,142	+				-0.6
2,839,190	+				+1.0
2,839,241	-				-2.3
2,839,356	-		LRK54_RS12690	0.16	-0.9
2,839,356	-		LRK54_RS12690	0.16	-0.8
2,839,362	+		LRK54_RS12690	0.18	-1.0
2,839,363	-		LRK54_RS12690	0.19	-0.9
2,839,385	+		LRK54_RS12690	0.28	-1.2
2,839,398	-		LRK54_RS12690	0.33	-0.8
2,839,462	-		LRK54_RS12690	0.60	-1.1
2,839,462	-		LRK54_RS12690	0.60	-0.7
2,839,485	+		LRK54_RS12690	0.70	+0.9
2,839,485	+		LRK54_RS12690	0.70	-1.0
2,839,485	+		LRK54_RS12690	0.70	+1.0
2,839,486	-		LRK54_RS12690	0.70	-1.1
2,839,486	-		LRK54_RS12690	0.70	-0.2
2,839,509	+		LRK54_RS12690	0.80	+0.6
2,839,509	+		LRK54_RS12690	0.80	-1.5
2,839,510	-		LRK54_RS12690	0.81	-1.3
2,839,512	+		LRK54_RS12690	0.81	+0.6
2,839,512	+		LRK54_RS12690	0.81	+0.6
2,839,518	+		LRK54_RS12690	0.84	-0.5
2,839,619	+				-1.3
2,839,633	+				+1.6
2,839,642	+				-1.5
2,839,643	-				-0.9
2,839,643	-				-0.5
2,839,674	+				-0.6
2,839,674	+				-2.1
2,839,675	-				-0.2
2,839,680	+				-1.1
2,839,681	-				-0.9
2,839,762	-				-0.8
2,839,767	-				-0.5
2,839,783	+				-0.7
2,839,842	-				-0.8
2,839,849	+				-1.0
2,839,849	+				-0.6
2,839,852	+				-1.5
2,839,866	+				+0.6
2,839,867	-				-2.0
2,839,870	-				-0.9
2,839,870	-				-0.5
2,839,909	-				+0.1
2,839,931	+				-0.3
2,839,931	+				-0.5
2,839,931	+				-0.2
2,839,932	-				+1.2
2,839,939	+				-1.5
2,839,940	-				-0.3
2,839,940	-				-1.3
2,839,940	-				-0.7
2,839,943	+				-0.8
2,839,976	+				-1.0
2,839,976	+				-0.6
2,839,977	-				-0.9
2,839,977	-				-0.9
2,839,977	-				-1.6
2,839,979	-				-0.1