Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18800

Experiment: Sucrose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18810 and HMPREF1058_RS18805 overlap by 4 nucleotidesHMPREF1058_RS18805 and HMPREF1058_RS18800 are separated by 87 nucleotidesHMPREF1058_RS18800 and HMPREF1058_RS18795 are separated by 178 nucleotides HMPREF1058_RS18810: HMPREF1058_RS18810 - phosphohydrolase, at 65,531 to 66,232 _RS18810 HMPREF1058_RS18805: HMPREF1058_RS18805 - hypothetical protein, at 66,229 to 66,777 _RS18805 HMPREF1058_RS18800: HMPREF1058_RS18800 - copper-translocating P-type ATPase, at 66,865 to 69,078 _RS18800 HMPREF1058_RS18795: HMPREF1058_RS18795 - DUF3298 and DUF4163 domain-containing protein, at 69,257 to 70,105 _RS18795 Position (kb) 66 67 68 69 70Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 65.952 kb on + strand, within HMPREF1058_RS18810at 65.952 kb on + strandat 66.000 kb on - strand, within HMPREF1058_RS18810at 66.047 kb on + strand, within HMPREF1058_RS18810at 66.048 kb on - strand, within HMPREF1058_RS18810at 66.199 kb on - strandat 66.199 kb on - strandat 66.199 kb on - strandat 66.221 kb on - strandat 66.228 kb on + strandat 66.228 kb on + strandat 66.306 kb on + strand, within HMPREF1058_RS18805at 66.309 kb on + strand, within HMPREF1058_RS18805at 66.354 kb on + strand, within HMPREF1058_RS18805at 66.416 kb on - strand, within HMPREF1058_RS18805at 66.448 kb on + strand, within HMPREF1058_RS18805at 66.477 kb on + strand, within HMPREF1058_RS18805at 66.484 kb on + strand, within HMPREF1058_RS18805at 66.509 kb on + strand, within HMPREF1058_RS18805at 66.509 kb on + strand, within HMPREF1058_RS18805at 66.541 kb on + strand, within HMPREF1058_RS18805at 66.542 kb on - strand, within HMPREF1058_RS18805at 66.576 kb on - strandat 66.576 kb on - strand, within HMPREF1058_RS18805at 66.608 kb on + strand, within HMPREF1058_RS18805at 66.622 kb on + strand, within HMPREF1058_RS18805at 66.623 kb on - strand, within HMPREF1058_RS18805at 66.631 kb on + strand, within HMPREF1058_RS18805at 66.749 kb on + strandat 66.750 kb on - strandat 66.750 kb on - strandat 66.788 kb on - strandat 66.830 kb on - strandat 66.904 kb on + strandat 66.919 kb on - strandat 66.919 kb on - strandat 66.961 kb on - strandat 66.965 kb on + strandat 66.966 kb on - strandat 66.966 kb on - strandat 67.014 kb on - strandat 67.017 kb on + strandat 67.052 kb on - strandat 67.052 kb on - strandat 67.165 kb on + strand, within HMPREF1058_RS18800at 67.166 kb on - strand, within HMPREF1058_RS18800at 67.211 kb on - strand, within HMPREF1058_RS18800at 67.211 kb on - strand, within HMPREF1058_RS18800at 67.215 kb on + strand, within HMPREF1058_RS18800at 67.248 kb on + strandat 67.354 kb on + strand, within HMPREF1058_RS18800at 67.355 kb on + strand, within HMPREF1058_RS18800at 67.355 kb on - strand, within HMPREF1058_RS18800at 67.355 kb on - strand, within HMPREF1058_RS18800at 67.361 kb on + strand, within HMPREF1058_RS18800at 67.405 kb on - strand, within HMPREF1058_RS18800at 67.447 kb on - strand, within HMPREF1058_RS18800at 67.464 kb on - strand, within HMPREF1058_RS18800at 67.672 kb on - strand, within HMPREF1058_RS18800at 67.786 kb on + strand, within HMPREF1058_RS18800at 67.808 kb on - strand, within HMPREF1058_RS18800at 67.891 kb on + strand, within HMPREF1058_RS18800at 67.892 kb on - strand, within HMPREF1058_RS18800at 68.020 kb on - strand, within HMPREF1058_RS18800at 68.094 kb on + strand, within HMPREF1058_RS18800at 68.173 kb on - strand, within HMPREF1058_RS18800at 68.267 kb on - strand, within HMPREF1058_RS18800at 68.431 kb on - strand, within HMPREF1058_RS18800at 68.494 kb on + strand, within HMPREF1058_RS18800at 68.494 kb on + strand, within HMPREF1058_RS18800at 68.496 kb on + strand, within HMPREF1058_RS18800at 68.497 kb on - strand, within HMPREF1058_RS18800at 68.513 kb on + strand, within HMPREF1058_RS18800at 68.514 kb on - strand, within HMPREF1058_RS18800at 68.516 kb on + strand, within HMPREF1058_RS18800at 68.517 kb on - strand, within HMPREF1058_RS18800at 68.518 kb on + strand, within HMPREF1058_RS18800at 68.519 kb on - strand, within HMPREF1058_RS18800at 68.519 kb on - strand, within HMPREF1058_RS18800at 68.519 kb on - strand, within HMPREF1058_RS18800at 68.601 kb on + strand, within HMPREF1058_RS18800at 68.616 kb on + strand, within HMPREF1058_RS18800at 68.663 kb on + strand, within HMPREF1058_RS18800at 68.722 kb on + strand, within HMPREF1058_RS18800at 68.791 kb on - strandat 68.863 kb on + strandat 68.934 kb on - strandat 68.998 kb on + strandat 69.090 kb on + strandat 69.090 kb on + strandat 69.094 kb on + strandat 69.095 kb on - strandat 69.098 kb on + strandat 69.199 kb on + strandat 69.199 kb on + strandat 69.329 kb on - strandat 69.421 kb on + strand, within HMPREF1058_RS18795at 69.428 kb on - strand, within HMPREF1058_RS18795at 69.438 kb on - strand, within HMPREF1058_RS18795at 69.439 kb on + strand, within HMPREF1058_RS18795at 69.440 kb on - strand, within HMPREF1058_RS18795at 69.443 kb on + strand, within HMPREF1058_RS18795at 69.499 kb on - strand, within HMPREF1058_RS18795at 69.665 kb on + strand, within HMPREF1058_RS18795at 69.665 kb on + strand, within HMPREF1058_RS18795at 69.709 kb on + strand, within HMPREF1058_RS18795at 69.710 kb on - strand, within HMPREF1058_RS18795at 69.710 kb on - strand, within HMPREF1058_RS18795at 69.740 kb on + strand, within HMPREF1058_RS18795at 69.742 kb on + strand, within HMPREF1058_RS18795at 69.825 kb on + strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.959 kb on - strand, within HMPREF1058_RS18795at 69.964 kb on + strand, within HMPREF1058_RS18795at 69.965 kb on - strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.969 kb on - strand, within HMPREF1058_RS18795at 69.991 kb on - strand, within HMPREF1058_RS18795at 70.025 kb on + strandat 70.025 kb on + strandat 70.032 kb on + strandat 70.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 20 mM (C)
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65,952 + HMPREF1058_RS18810 0.60 -0.9
65,952 + +2.8
66,000 - HMPREF1058_RS18810 0.67 +3.0
66,047 + HMPREF1058_RS18810 0.74 +1.4
66,048 - HMPREF1058_RS18810 0.74 -1.3
66,199 - +0.8
66,199 - +2.0
66,199 - +0.4
66,221 - -0.7
66,228 + -0.6
66,228 + +0.0
66,306 + HMPREF1058_RS18805 0.14 +0.3
66,309 + HMPREF1058_RS18805 0.15 -1.1
66,354 + HMPREF1058_RS18805 0.23 +0.4
66,416 - HMPREF1058_RS18805 0.34 +0.2
66,448 + HMPREF1058_RS18805 0.40 +2.4
66,477 + HMPREF1058_RS18805 0.45 +2.7
66,484 + HMPREF1058_RS18805 0.46 +1.5
66,509 + HMPREF1058_RS18805 0.51 -1.1
66,509 + HMPREF1058_RS18805 0.51 +0.8
66,541 + HMPREF1058_RS18805 0.57 +2.0
66,542 - HMPREF1058_RS18805 0.57 -0.7
66,576 - +0.1
66,576 - HMPREF1058_RS18805 0.63 -1.6
66,608 + HMPREF1058_RS18805 0.69 +0.0
66,622 + HMPREF1058_RS18805 0.72 +1.2
66,623 - HMPREF1058_RS18805 0.72 -0.5
66,631 + HMPREF1058_RS18805 0.73 +0.2
66,749 + -0.2
66,750 - -0.4
66,750 - -1.0
66,788 - -1.0
66,830 - -2.0
66,904 + -1.6
66,919 - -0.3
66,919 - -0.5
66,961 - -1.5
66,965 + +0.0
66,966 - +0.1
66,966 - -0.1
67,014 - -0.2
67,017 + +0.2
67,052 - +0.6
67,052 - -1.6
67,165 + HMPREF1058_RS18800 0.14 -1.5
67,166 - HMPREF1058_RS18800 0.14 -1.4
67,211 - HMPREF1058_RS18800 0.16 -0.6
67,211 - HMPREF1058_RS18800 0.16 -3.6
67,215 + HMPREF1058_RS18800 0.16 -2.2
67,248 + -0.2
67,354 + HMPREF1058_RS18800 0.22 -1.9
67,355 + HMPREF1058_RS18800 0.22 -1.7
67,355 - HMPREF1058_RS18800 0.22 -4.3
67,355 - HMPREF1058_RS18800 0.22 -1.3
67,361 + HMPREF1058_RS18800 0.22 -2.3
67,405 - HMPREF1058_RS18800 0.24 -0.8
67,447 - HMPREF1058_RS18800 0.26 -1.0
67,464 - HMPREF1058_RS18800 0.27 -0.4
67,672 - HMPREF1058_RS18800 0.36 -1.6
67,786 + HMPREF1058_RS18800 0.42 -1.6
67,808 - HMPREF1058_RS18800 0.43 -2.7
67,891 + HMPREF1058_RS18800 0.46 -1.7
67,892 - HMPREF1058_RS18800 0.46 -0.2
68,020 - HMPREF1058_RS18800 0.52 -1.9
68,094 + HMPREF1058_RS18800 0.56 -2.7
68,173 - HMPREF1058_RS18800 0.59 -3.1
68,267 - HMPREF1058_RS18800 0.63 -2.1
68,431 - HMPREF1058_RS18800 0.71 -1.4
68,494 + HMPREF1058_RS18800 0.74 +0.6
68,494 + HMPREF1058_RS18800 0.74 +1.0
68,496 + HMPREF1058_RS18800 0.74 -2.4
68,497 - HMPREF1058_RS18800 0.74 -0.9
68,513 + HMPREF1058_RS18800 0.74 -3.6
68,514 - HMPREF1058_RS18800 0.74 -1.4
68,516 + HMPREF1058_RS18800 0.75 -1.3
68,517 - HMPREF1058_RS18800 0.75 -2.9
68,518 + HMPREF1058_RS18800 0.75 +0.6
68,519 - HMPREF1058_RS18800 0.75 +0.7
68,519 - HMPREF1058_RS18800 0.75 -0.9
68,519 - HMPREF1058_RS18800 0.75 -1.7
68,601 + HMPREF1058_RS18800 0.78 -3.1
68,616 + HMPREF1058_RS18800 0.79 -2.7
68,663 + HMPREF1058_RS18800 0.81 -2.8
68,722 + HMPREF1058_RS18800 0.84 -2.9
68,791 - +1.4
68,863 + -2.7
68,934 - -0.7
68,998 + -2.4
69,090 + -0.8
69,090 + -5.7
69,094 + -4.1
69,095 - -0.6
69,098 + -1.3
69,199 + +1.6
69,199 + +1.3
69,329 - +2.3
69,421 + HMPREF1058_RS18795 0.19 -1.6
69,428 - HMPREF1058_RS18795 0.20 -2.0
69,438 - HMPREF1058_RS18795 0.21 -1.4
69,439 + HMPREF1058_RS18795 0.21 +0.8
69,440 - HMPREF1058_RS18795 0.22 +1.8
69,443 + HMPREF1058_RS18795 0.22 +0.7
69,499 - HMPREF1058_RS18795 0.29 +2.1
69,665 + HMPREF1058_RS18795 0.48 -1.4
69,665 + HMPREF1058_RS18795 0.48 -0.7
69,709 + HMPREF1058_RS18795 0.53 -0.4
69,710 - HMPREF1058_RS18795 0.53 +1.8
69,710 - HMPREF1058_RS18795 0.53 +0.7
69,740 + HMPREF1058_RS18795 0.57 +0.4
69,742 + HMPREF1058_RS18795 0.57 +2.0
69,825 + HMPREF1058_RS18795 0.67 -0.3
69,826 - HMPREF1058_RS18795 0.67 +2.4
69,826 - HMPREF1058_RS18795 0.67 +1.4
69,826 - HMPREF1058_RS18795 0.67 +3.8
69,959 - HMPREF1058_RS18795 0.83 +2.2
69,964 + HMPREF1058_RS18795 0.83 +2.2
69,965 - HMPREF1058_RS18795 0.83 +1.6
69,968 + HMPREF1058_RS18795 0.84 -1.4
69,968 + HMPREF1058_RS18795 0.84 -1.0
69,968 + HMPREF1058_RS18795 0.84 -2.9
69,968 + HMPREF1058_RS18795 0.84 -0.5
69,969 - HMPREF1058_RS18795 0.84 +1.7
69,991 - HMPREF1058_RS18795 0.86 +0.8
70,025 + -1.0
70,025 + -0.2
70,032 + -3.5
70,040 + -2.6

Or see this region's nucleotide sequence