Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18025

Experiment: Sucrose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18030 and HMPREF1058_RS18025 are separated by 48 nucleotidesHMPREF1058_RS18025 and HMPREF1058_RS18020 are separated by 84 nucleotides HMPREF1058_RS18030: HMPREF1058_RS18030 - glucose-6-phosphate dehydrogenase, at 273,297 to 274,805 _RS18030 HMPREF1058_RS18025: HMPREF1058_RS18025 - decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase, at 274,854 to 276,290 _RS18025 HMPREF1058_RS18020: HMPREF1058_RS18020 - dicarboxylate/amino acid:cation symporter, at 276,375 to 277,553 _RS18020 Position (kb) 274 275 276 277Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 273.857 kb on + strand, within HMPREF1058_RS18030at 273.858 kb on - strand, within HMPREF1058_RS18030at 273.953 kb on + strand, within HMPREF1058_RS18030at 273.955 kb on + strand, within HMPREF1058_RS18030at 273.955 kb on + strand, within HMPREF1058_RS18030at 273.956 kb on - strand, within HMPREF1058_RS18030at 273.960 kb on - strand, within HMPREF1058_RS18030at 273.960 kb on - strand, within HMPREF1058_RS18030at 274.053 kb on - strand, within HMPREF1058_RS18030at 274.111 kb on + strand, within HMPREF1058_RS18030at 274.112 kb on - strand, within HMPREF1058_RS18030at 274.131 kb on + strand, within HMPREF1058_RS18030at 274.131 kb on + strand, within HMPREF1058_RS18030at 274.131 kb on + strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.161 kb on + strand, within HMPREF1058_RS18030at 274.165 kb on + strand, within HMPREF1058_RS18030at 274.165 kb on + strand, within HMPREF1058_RS18030at 274.165 kb on + strand, within HMPREF1058_RS18030at 274.166 kb on - strand, within HMPREF1058_RS18030at 274.175 kb on - strand, within HMPREF1058_RS18030at 274.203 kb on - strand, within HMPREF1058_RS18030at 274.227 kb on - strand, within HMPREF1058_RS18030at 274.308 kb on - strand, within HMPREF1058_RS18030at 274.362 kb on - strand, within HMPREF1058_RS18030at 274.456 kb on + strand, within HMPREF1058_RS18030at 274.456 kb on + strand, within HMPREF1058_RS18030at 274.516 kb on + strand, within HMPREF1058_RS18030at 274.516 kb on + strand, within HMPREF1058_RS18030at 274.657 kb on + strandat 274.716 kb on + strandat 274.716 kb on + strandat 274.717 kb on - strandat 274.717 kb on - strandat 274.830 kb on + strandat 274.831 kb on - strandat 274.831 kb on - strandat 274.831 kb on - strandat 274.831 kb on - strandat 274.853 kb on - strandat 274.853 kb on - strandat 274.853 kb on - strandat 274.919 kb on + strandat 274.933 kb on + strandat 274.993 kb on + strandat 275.054 kb on - strand, within HMPREF1058_RS18025at 275.082 kb on + strand, within HMPREF1058_RS18025at 275.177 kb on + strand, within HMPREF1058_RS18025at 275.275 kb on + strand, within HMPREF1058_RS18025at 275.275 kb on + strand, within HMPREF1058_RS18025at 275.296 kb on + strandat 275.336 kb on + strand, within HMPREF1058_RS18025at 275.337 kb on - strand, within HMPREF1058_RS18025at 275.364 kb on - strand, within HMPREF1058_RS18025at 275.364 kb on - strand, within HMPREF1058_RS18025at 275.366 kb on - strand, within HMPREF1058_RS18025at 275.366 kb on - strand, within HMPREF1058_RS18025at 275.450 kb on + strand, within HMPREF1058_RS18025at 275.451 kb on - strand, within HMPREF1058_RS18025at 275.461 kb on - strand, within HMPREF1058_RS18025at 275.571 kb on - strand, within HMPREF1058_RS18025at 275.571 kb on - strand, within HMPREF1058_RS18025at 275.584 kb on + strand, within HMPREF1058_RS18025at 275.588 kb on + strand, within HMPREF1058_RS18025at 275.588 kb on + strand, within HMPREF1058_RS18025at 275.589 kb on - strand, within HMPREF1058_RS18025at 275.672 kb on - strand, within HMPREF1058_RS18025at 275.707 kb on - strand, within HMPREF1058_RS18025at 275.911 kb on + strand, within HMPREF1058_RS18025at 275.911 kb on + strand, within HMPREF1058_RS18025at 275.912 kb on - strand, within HMPREF1058_RS18025at 275.915 kb on + strand, within HMPREF1058_RS18025at 275.951 kb on + strand, within HMPREF1058_RS18025at 276.118 kb on - strand, within HMPREF1058_RS18025at 276.118 kb on - strand, within HMPREF1058_RS18025at 276.148 kb on - strandat 276.150 kb on - strandat 276.163 kb on - strandat 276.163 kb on - strandat 276.201 kb on + strandat 276.201 kb on + strandat 276.201 kb on + strandat 276.202 kb on - strandat 276.202 kb on - strandat 276.273 kb on + strandat 276.273 kb on + strandat 276.273 kb on + strandat 276.296 kb on - strandat 276.398 kb on - strandat 276.410 kb on + strandat 276.434 kb on - strandat 276.472 kb on + strandat 276.612 kb on + strand, within HMPREF1058_RS18020at 276.646 kb on - strand, within HMPREF1058_RS18020at 276.646 kb on - strand, within HMPREF1058_RS18020at 276.723 kb on - strand, within HMPREF1058_RS18020at 276.825 kb on - strand, within HMPREF1058_RS18020at 276.909 kb on + strand, within HMPREF1058_RS18020at 276.912 kb on - strand, within HMPREF1058_RS18020at 276.913 kb on + strand, within HMPREF1058_RS18020at 276.914 kb on - strand, within HMPREF1058_RS18020at 276.922 kb on + strand, within HMPREF1058_RS18020at 276.923 kb on - strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.953 kb on - strand, within HMPREF1058_RS18020at 276.953 kb on - strand, within HMPREF1058_RS18020at 276.953 kb on - strand, within HMPREF1058_RS18020at 276.954 kb on + strand, within HMPREF1058_RS18020at 276.955 kb on - strand, within HMPREF1058_RS18020at 276.956 kb on + strand, within HMPREF1058_RS18020at 276.957 kb on - strand, within HMPREF1058_RS18020at 276.957 kb on - strand, within HMPREF1058_RS18020at 276.961 kb on + strand, within HMPREF1058_RS18020at 277.032 kb on - strand, within HMPREF1058_RS18020at 277.032 kb on - strand, within HMPREF1058_RS18020at 277.205 kb on - strand, within HMPREF1058_RS18020at 277.205 kb on - strand, within HMPREF1058_RS18020at 277.272 kb on - strand, within HMPREF1058_RS18020

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 20 mM (C)
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273,857 + HMPREF1058_RS18030 0.37 +2.1
273,858 - HMPREF1058_RS18030 0.37 +0.2
273,953 + HMPREF1058_RS18030 0.43 +1.0
273,955 + HMPREF1058_RS18030 0.44 -2.0
273,955 + HMPREF1058_RS18030 0.44 -2.9
273,956 - HMPREF1058_RS18030 0.44 -1.7
273,960 - HMPREF1058_RS18030 0.44 -0.7
273,960 - HMPREF1058_RS18030 0.44 +0.4
274,053 - HMPREF1058_RS18030 0.50 +2.2
274,111 + HMPREF1058_RS18030 0.54 -1.3
274,112 - HMPREF1058_RS18030 0.54 +0.1
274,131 + HMPREF1058_RS18030 0.55 +0.8
274,131 + HMPREF1058_RS18030 0.55 -0.3
274,131 + HMPREF1058_RS18030 0.55 +0.5
274,132 - HMPREF1058_RS18030 0.55 +1.3
274,132 - HMPREF1058_RS18030 0.55 +0.8
274,132 - HMPREF1058_RS18030 0.55 +0.9
274,132 - HMPREF1058_RS18030 0.55 +0.5
274,132 - HMPREF1058_RS18030 0.55 +1.2
274,161 + HMPREF1058_RS18030 0.57 -0.2
274,165 + HMPREF1058_RS18030 0.58 +1.9
274,165 + HMPREF1058_RS18030 0.58 +1.3
274,165 + HMPREF1058_RS18030 0.58 +1.8
274,166 - HMPREF1058_RS18030 0.58 +0.4
274,175 - HMPREF1058_RS18030 0.58 +0.6
274,203 - HMPREF1058_RS18030 0.60 +0.3
274,227 - HMPREF1058_RS18030 0.62 +1.3
274,308 - HMPREF1058_RS18030 0.67 -1.9
274,362 - HMPREF1058_RS18030 0.71 -0.8
274,456 + HMPREF1058_RS18030 0.77 +1.6
274,456 + HMPREF1058_RS18030 0.77 -2.6
274,516 + HMPREF1058_RS18030 0.81 -0.3
274,516 + HMPREF1058_RS18030 0.81 -0.5
274,657 + -0.4
274,716 + +0.8
274,716 + -2.5
274,717 - -1.2
274,717 - +0.5
274,830 + +0.3
274,831 - +0.8
274,831 - -0.8
274,831 - -1.3
274,831 - -0.8
274,853 - -0.6
274,853 - +1.5
274,853 - +0.5
274,919 + -0.9
274,933 + +0.4
274,993 + -1.4
275,054 - HMPREF1058_RS18025 0.14 -0.9
275,082 + HMPREF1058_RS18025 0.16 -0.2
275,177 + HMPREF1058_RS18025 0.22 +0.6
275,275 + HMPREF1058_RS18025 0.29 +1.4
275,275 + HMPREF1058_RS18025 0.29 +1.5
275,296 + +0.4
275,336 + HMPREF1058_RS18025 0.34 -0.5
275,337 - HMPREF1058_RS18025 0.34 -3.2
275,364 - HMPREF1058_RS18025 0.35 -3.4
275,364 - HMPREF1058_RS18025 0.35 -2.3
275,366 - HMPREF1058_RS18025 0.36 -3.5
275,366 - HMPREF1058_RS18025 0.36 -3.9
275,450 + HMPREF1058_RS18025 0.41 +0.6
275,451 - HMPREF1058_RS18025 0.42 -4.5
275,461 - HMPREF1058_RS18025 0.42 -3.0
275,571 - HMPREF1058_RS18025 0.50 -5.4
275,571 - HMPREF1058_RS18025 0.50 -4.7
275,584 + HMPREF1058_RS18025 0.51 -0.2
275,588 + HMPREF1058_RS18025 0.51 +0.2
275,588 + HMPREF1058_RS18025 0.51 -0.2
275,589 - HMPREF1058_RS18025 0.51 -2.8
275,672 - HMPREF1058_RS18025 0.57 -2.1
275,707 - HMPREF1058_RS18025 0.59 -1.1
275,911 + HMPREF1058_RS18025 0.74 +1.5
275,911 + HMPREF1058_RS18025 0.74 +0.1
275,912 - HMPREF1058_RS18025 0.74 -3.6
275,915 + HMPREF1058_RS18025 0.74 +1.8
275,951 + HMPREF1058_RS18025 0.76 +2.4
276,118 - HMPREF1058_RS18025 0.88 -2.5
276,118 - HMPREF1058_RS18025 0.88 -3.0
276,148 - -3.6
276,150 - -3.7
276,163 - -3.1
276,163 - -2.8
276,201 + +0.5
276,201 + -1.1
276,201 + +1.5
276,202 - +0.1
276,202 - -1.5
276,273 + -3.1
276,273 + +0.4
276,273 + -0.2
276,296 - -4.5
276,398 - +1.7
276,410 + +1.6
276,434 - +2.2
276,472 + -0.6
276,612 + HMPREF1058_RS18020 0.20 +1.9
276,646 - HMPREF1058_RS18020 0.23 +0.3
276,646 - HMPREF1058_RS18020 0.23 -0.0
276,723 - HMPREF1058_RS18020 0.30 -0.1
276,825 - HMPREF1058_RS18020 0.38 +1.7
276,909 + HMPREF1058_RS18020 0.45 +0.9
276,912 - HMPREF1058_RS18020 0.46 +2.5
276,913 + HMPREF1058_RS18020 0.46 +0.5
276,914 - HMPREF1058_RS18020 0.46 +3.3
276,922 + HMPREF1058_RS18020 0.46 +1.3
276,923 - HMPREF1058_RS18020 0.46 +0.8
276,952 + HMPREF1058_RS18020 0.49 +1.8
276,952 + HMPREF1058_RS18020 0.49 +1.0
276,952 + HMPREF1058_RS18020 0.49 +0.6
276,952 + HMPREF1058_RS18020 0.49 +1.4
276,952 + HMPREF1058_RS18020 0.49 +1.7
276,953 - HMPREF1058_RS18020 0.49 +1.1
276,953 - HMPREF1058_RS18020 0.49 -0.5
276,953 - HMPREF1058_RS18020 0.49 +1.0
276,954 + HMPREF1058_RS18020 0.49 -0.6
276,955 - HMPREF1058_RS18020 0.49 +1.6
276,956 + HMPREF1058_RS18020 0.49 +1.9
276,957 - HMPREF1058_RS18020 0.49 +1.2
276,957 - HMPREF1058_RS18020 0.49 +1.7
276,961 + HMPREF1058_RS18020 0.50 +1.5
277,032 - HMPREF1058_RS18020 0.56 +1.2
277,032 - HMPREF1058_RS18020 0.56 +2.9
277,205 - HMPREF1058_RS18020 0.70 -2.4
277,205 - HMPREF1058_RS18020 0.70 +1.2
277,272 - HMPREF1058_RS18020 0.76 -1.2

Or see this region's nucleotide sequence