Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18020

Experiment: Sucrose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18025 and HMPREF1058_RS18020 are separated by 84 nucleotidesHMPREF1058_RS18020 and HMPREF1058_RS18015 are separated by 204 nucleotides HMPREF1058_RS18025: HMPREF1058_RS18025 - decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase, at 274,854 to 276,290 _RS18025 HMPREF1058_RS18020: HMPREF1058_RS18020 - dicarboxylate/amino acid:cation symporter, at 276,375 to 277,553 _RS18020 HMPREF1058_RS18015: HMPREF1058_RS18015 - OprO/OprP family phosphate-selective porin, at 277,758 to 278,927 _RS18015 Position (kb) 276 277 278Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 275.450 kb on + strand, within HMPREF1058_RS18025at 275.451 kb on - strand, within HMPREF1058_RS18025at 275.461 kb on - strand, within HMPREF1058_RS18025at 275.571 kb on - strand, within HMPREF1058_RS18025at 275.571 kb on - strand, within HMPREF1058_RS18025at 275.584 kb on + strand, within HMPREF1058_RS18025at 275.588 kb on + strand, within HMPREF1058_RS18025at 275.588 kb on + strand, within HMPREF1058_RS18025at 275.589 kb on - strand, within HMPREF1058_RS18025at 275.672 kb on - strand, within HMPREF1058_RS18025at 275.707 kb on - strand, within HMPREF1058_RS18025at 275.911 kb on + strand, within HMPREF1058_RS18025at 275.911 kb on + strand, within HMPREF1058_RS18025at 275.912 kb on - strand, within HMPREF1058_RS18025at 275.915 kb on + strand, within HMPREF1058_RS18025at 275.951 kb on + strand, within HMPREF1058_RS18025at 276.118 kb on - strand, within HMPREF1058_RS18025at 276.118 kb on - strand, within HMPREF1058_RS18025at 276.148 kb on - strandat 276.150 kb on - strandat 276.163 kb on - strandat 276.163 kb on - strandat 276.201 kb on + strandat 276.201 kb on + strandat 276.201 kb on + strandat 276.202 kb on - strandat 276.202 kb on - strandat 276.273 kb on + strandat 276.273 kb on + strandat 276.273 kb on + strandat 276.296 kb on - strandat 276.398 kb on - strandat 276.410 kb on + strandat 276.434 kb on - strandat 276.472 kb on + strandat 276.612 kb on + strand, within HMPREF1058_RS18020at 276.646 kb on - strand, within HMPREF1058_RS18020at 276.646 kb on - strand, within HMPREF1058_RS18020at 276.723 kb on - strand, within HMPREF1058_RS18020at 276.825 kb on - strand, within HMPREF1058_RS18020at 276.909 kb on + strand, within HMPREF1058_RS18020at 276.912 kb on - strand, within HMPREF1058_RS18020at 276.913 kb on + strand, within HMPREF1058_RS18020at 276.914 kb on - strand, within HMPREF1058_RS18020at 276.922 kb on + strand, within HMPREF1058_RS18020at 276.923 kb on - strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.952 kb on + strand, within HMPREF1058_RS18020at 276.953 kb on - strand, within HMPREF1058_RS18020at 276.953 kb on - strand, within HMPREF1058_RS18020at 276.953 kb on - strand, within HMPREF1058_RS18020at 276.954 kb on + strand, within HMPREF1058_RS18020at 276.955 kb on - strand, within HMPREF1058_RS18020at 276.956 kb on + strand, within HMPREF1058_RS18020at 276.957 kb on - strand, within HMPREF1058_RS18020at 276.957 kb on - strand, within HMPREF1058_RS18020at 276.961 kb on + strand, within HMPREF1058_RS18020at 277.032 kb on - strand, within HMPREF1058_RS18020at 277.032 kb on - strand, within HMPREF1058_RS18020at 277.205 kb on - strand, within HMPREF1058_RS18020at 277.205 kb on - strand, within HMPREF1058_RS18020at 277.272 kb on - strand, within HMPREF1058_RS18020at 277.340 kb on - strand, within HMPREF1058_RS18020at 277.340 kb on - strand, within HMPREF1058_RS18020at 277.476 kb on - strandat 277.509 kb on - strandat 277.551 kb on + strandat 277.639 kb on - strandat 277.846 kb on + strandat 277.851 kb on - strandat 277.853 kb on - strandat 277.853 kb on - strandat 277.867 kb on + strandat 277.867 kb on + strandat 277.993 kb on + strand, within HMPREF1058_RS18015at 278.053 kb on + strand, within HMPREF1058_RS18015at 278.061 kb on - strand, within HMPREF1058_RS18015at 278.061 kb on - strand, within HMPREF1058_RS18015at 278.062 kb on + strand, within HMPREF1058_RS18015at 278.063 kb on - strand, within HMPREF1058_RS18015at 278.116 kb on - strand, within HMPREF1058_RS18015at 278.116 kb on - strand, within HMPREF1058_RS18015at 278.116 kb on - strand, within HMPREF1058_RS18015at 278.116 kb on - strand, within HMPREF1058_RS18015at 278.117 kb on + strand, within HMPREF1058_RS18015at 278.178 kb on - strand, within HMPREF1058_RS18015at 278.213 kb on - strand, within HMPREF1058_RS18015at 278.215 kb on + strand, within HMPREF1058_RS18015at 278.304 kb on - strand, within HMPREF1058_RS18015at 278.304 kb on - strand, within HMPREF1058_RS18015at 278.325 kb on - strand, within HMPREF1058_RS18015at 278.341 kb on + strand, within HMPREF1058_RS18015at 278.341 kb on + strand, within HMPREF1058_RS18015at 278.388 kb on + strand, within HMPREF1058_RS18015at 278.406 kb on - strand, within HMPREF1058_RS18015at 278.406 kb on - strand, within HMPREF1058_RS18015at 278.406 kb on - strand, within HMPREF1058_RS18015at 278.408 kb on - strand, within HMPREF1058_RS18015at 278.413 kb on + strand, within HMPREF1058_RS18015at 278.413 kb on + strand, within HMPREF1058_RS18015at 278.414 kb on - strandat 278.414 kb on - strand, within HMPREF1058_RS18015at 278.414 kb on - strand, within HMPREF1058_RS18015at 278.442 kb on - strand, within HMPREF1058_RS18015at 278.455 kb on - strand, within HMPREF1058_RS18015at 278.465 kb on + strand, within HMPREF1058_RS18015at 278.466 kb on - strand, within HMPREF1058_RS18015at 278.466 kb on - strand, within HMPREF1058_RS18015at 278.468 kb on - strand, within HMPREF1058_RS18015at 278.512 kb on + strand, within HMPREF1058_RS18015

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 20 mM (C)
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275,450 + HMPREF1058_RS18025 0.41 +0.6
275,451 - HMPREF1058_RS18025 0.42 -4.5
275,461 - HMPREF1058_RS18025 0.42 -3.0
275,571 - HMPREF1058_RS18025 0.50 -5.4
275,571 - HMPREF1058_RS18025 0.50 -4.7
275,584 + HMPREF1058_RS18025 0.51 -0.2
275,588 + HMPREF1058_RS18025 0.51 +0.2
275,588 + HMPREF1058_RS18025 0.51 -0.2
275,589 - HMPREF1058_RS18025 0.51 -2.8
275,672 - HMPREF1058_RS18025 0.57 -2.1
275,707 - HMPREF1058_RS18025 0.59 -1.1
275,911 + HMPREF1058_RS18025 0.74 +1.5
275,911 + HMPREF1058_RS18025 0.74 +0.1
275,912 - HMPREF1058_RS18025 0.74 -3.6
275,915 + HMPREF1058_RS18025 0.74 +1.8
275,951 + HMPREF1058_RS18025 0.76 +2.4
276,118 - HMPREF1058_RS18025 0.88 -2.5
276,118 - HMPREF1058_RS18025 0.88 -3.0
276,148 - -3.6
276,150 - -3.7
276,163 - -3.1
276,163 - -2.8
276,201 + +0.5
276,201 + -1.1
276,201 + +1.5
276,202 - +0.1
276,202 - -1.5
276,273 + -3.1
276,273 + +0.4
276,273 + -0.2
276,296 - -4.5
276,398 - +1.7
276,410 + +1.6
276,434 - +2.2
276,472 + -0.6
276,612 + HMPREF1058_RS18020 0.20 +1.9
276,646 - HMPREF1058_RS18020 0.23 +0.3
276,646 - HMPREF1058_RS18020 0.23 -0.0
276,723 - HMPREF1058_RS18020 0.30 -0.1
276,825 - HMPREF1058_RS18020 0.38 +1.7
276,909 + HMPREF1058_RS18020 0.45 +0.9
276,912 - HMPREF1058_RS18020 0.46 +2.5
276,913 + HMPREF1058_RS18020 0.46 +0.5
276,914 - HMPREF1058_RS18020 0.46 +3.3
276,922 + HMPREF1058_RS18020 0.46 +1.3
276,923 - HMPREF1058_RS18020 0.46 +0.8
276,952 + HMPREF1058_RS18020 0.49 +1.8
276,952 + HMPREF1058_RS18020 0.49 +1.0
276,952 + HMPREF1058_RS18020 0.49 +0.6
276,952 + HMPREF1058_RS18020 0.49 +1.4
276,952 + HMPREF1058_RS18020 0.49 +1.7
276,953 - HMPREF1058_RS18020 0.49 +1.1
276,953 - HMPREF1058_RS18020 0.49 -0.5
276,953 - HMPREF1058_RS18020 0.49 +1.0
276,954 + HMPREF1058_RS18020 0.49 -0.6
276,955 - HMPREF1058_RS18020 0.49 +1.6
276,956 + HMPREF1058_RS18020 0.49 +1.9
276,957 - HMPREF1058_RS18020 0.49 +1.2
276,957 - HMPREF1058_RS18020 0.49 +1.7
276,961 + HMPREF1058_RS18020 0.50 +1.5
277,032 - HMPREF1058_RS18020 0.56 +1.2
277,032 - HMPREF1058_RS18020 0.56 +2.9
277,205 - HMPREF1058_RS18020 0.70 -2.4
277,205 - HMPREF1058_RS18020 0.70 +1.2
277,272 - HMPREF1058_RS18020 0.76 -1.2
277,340 - HMPREF1058_RS18020 0.82 +0.4
277,340 - HMPREF1058_RS18020 0.82 +1.3
277,476 - +1.4
277,509 - +0.5
277,551 + -0.0
277,639 - -0.3
277,846 + -0.6
277,851 - -1.4
277,853 - -1.6
277,853 - +0.7
277,867 + +0.1
277,867 + -1.9
277,993 + HMPREF1058_RS18015 0.20 -0.8
278,053 + HMPREF1058_RS18015 0.25 -1.6
278,061 - HMPREF1058_RS18015 0.26 -3.3
278,061 - HMPREF1058_RS18015 0.26 -1.1
278,062 + HMPREF1058_RS18015 0.26 +0.5
278,063 - HMPREF1058_RS18015 0.26 -0.8
278,116 - HMPREF1058_RS18015 0.31 -2.1
278,116 - HMPREF1058_RS18015 0.31 -0.8
278,116 - HMPREF1058_RS18015 0.31 +0.5
278,116 - HMPREF1058_RS18015 0.31 -3.5
278,117 + HMPREF1058_RS18015 0.31 -0.8
278,178 - HMPREF1058_RS18015 0.36 +0.1
278,213 - HMPREF1058_RS18015 0.39 -0.2
278,215 + HMPREF1058_RS18015 0.39 -2.2
278,304 - HMPREF1058_RS18015 0.47 +1.5
278,304 - HMPREF1058_RS18015 0.47 -1.2
278,325 - HMPREF1058_RS18015 0.48 -0.0
278,341 + HMPREF1058_RS18015 0.50 -0.5
278,341 + HMPREF1058_RS18015 0.50 +0.9
278,388 + HMPREF1058_RS18015 0.54 -0.8
278,406 - HMPREF1058_RS18015 0.55 +0.3
278,406 - HMPREF1058_RS18015 0.55 -0.8
278,406 - HMPREF1058_RS18015 0.55 -0.6
278,408 - HMPREF1058_RS18015 0.56 +0.1
278,413 + HMPREF1058_RS18015 0.56 -3.6
278,413 + HMPREF1058_RS18015 0.56 +0.1
278,414 - +1.4
278,414 - HMPREF1058_RS18015 0.56 -1.9
278,414 - HMPREF1058_RS18015 0.56 -2.9
278,442 - HMPREF1058_RS18015 0.58 -1.8
278,455 - HMPREF1058_RS18015 0.60 +0.4
278,465 + HMPREF1058_RS18015 0.60 +0.3
278,466 - HMPREF1058_RS18015 0.61 +1.3
278,466 - HMPREF1058_RS18015 0.61 -2.3
278,468 - HMPREF1058_RS18015 0.61 +0.9
278,512 + HMPREF1058_RS18015 0.64 -2.7

Or see this region's nucleotide sequence