Experiment: Sucrose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15630 and HMPREF1058_RS15625 are separated by 134 nucleotides HMPREF1058_RS15625 and HMPREF1058_RS15620 overlap by 4 nucleotides HMPREF1058_RS15620 and HMPREF1058_RS15615 are separated by 106 nucleotides
HMPREF1058_RS15630: HMPREF1058_RS15630 - FGGY-family carbohydrate kinase, at 870,643 to 872,241
_RS15630
HMPREF1058_RS15625: HMPREF1058_RS15625 - transketolase, at 872,376 to 874,388
_RS15625
HMPREF1058_RS15620: HMPREF1058_RS15620 - ribose 5-phosphate isomerase B, at 874,385 to 874,819
_RS15620
HMPREF1058_RS15615: HMPREF1058_RS15615 - DUF4468 domain-containing protein, at 874,926 to 876,023
_RS15615
Position (kb) 872
873
874
875 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 871.394 kb on + strand at 871.473 kb on - strand, within HMPREF1058_RS15630 at 871.505 kb on + strand, within HMPREF1058_RS15630 at 871.575 kb on - strand, within HMPREF1058_RS15630 at 871.578 kb on + strand, within HMPREF1058_RS15630 at 871.578 kb on + strand, within HMPREF1058_RS15630 at 871.584 kb on - strand, within HMPREF1058_RS15630 at 871.584 kb on - strand, within HMPREF1058_RS15630 at 871.584 kb on - strand, within HMPREF1058_RS15630 at 871.584 kb on - strand, within HMPREF1058_RS15630 at 871.669 kb on - strand, within HMPREF1058_RS15630 at 871.680 kb on - strand, within HMPREF1058_RS15630 at 871.734 kb on + strand, within HMPREF1058_RS15630 at 871.734 kb on + strand, within HMPREF1058_RS15630 at 871.744 kb on - strand, within HMPREF1058_RS15630 at 871.748 kb on - strand, within HMPREF1058_RS15630 at 871.872 kb on + strand, within HMPREF1058_RS15630 at 871.882 kb on - strand, within HMPREF1058_RS15630 at 871.988 kb on + strand, within HMPREF1058_RS15630 at 871.988 kb on + strand, within HMPREF1058_RS15630 at 872.060 kb on - strand, within HMPREF1058_RS15630 at 872.142 kb on - strand at 872.179 kb on + strand at 872.179 kb on + strand at 872.179 kb on + strand at 872.179 kb on + strand at 872.179 kb on + strand at 872.180 kb on - strand at 872.180 kb on - strand at 872.270 kb on + strand at 872.270 kb on + strand at 872.271 kb on - strand at 872.290 kb on + strand at 872.290 kb on + strand at 872.298 kb on + strand at 872.313 kb on + strand at 872.331 kb on + strand at 872.347 kb on + strand at 872.347 kb on + strand at 874.834 kb on + strand at 874.862 kb on + strand at 874.885 kb on + strand at 874.923 kb on - strand at 875.016 kb on - strand at 875.016 kb on - strand at 875.050 kb on + strand, within HMPREF1058_RS15615 at 875.051 kb on - strand, within HMPREF1058_RS15615 at 875.051 kb on - strand, within HMPREF1058_RS15615 at 875.080 kb on + strand, within HMPREF1058_RS15615 at 875.081 kb on - strand, within HMPREF1058_RS15615 at 875.152 kb on - strand, within HMPREF1058_RS15615 at 875.313 kb on + strand, within HMPREF1058_RS15615 at 875.313 kb on + strand, within HMPREF1058_RS15615 at 875.314 kb on - strand, within HMPREF1058_RS15615
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 20 mM (C) remove 871,394 + -0.4 871,473 - HMPREF1058_RS15630 0.52 +0.7 871,505 + HMPREF1058_RS15630 0.54 -1.8 871,575 - HMPREF1058_RS15630 0.58 -0.1 871,578 + HMPREF1058_RS15630 0.58 -2.0 871,578 + HMPREF1058_RS15630 0.58 +1.5 871,584 - HMPREF1058_RS15630 0.59 +1.7 871,584 - HMPREF1058_RS15630 0.59 -1.7 871,584 - HMPREF1058_RS15630 0.59 -0.2 871,584 - HMPREF1058_RS15630 0.59 +1.2 871,669 - HMPREF1058_RS15630 0.64 +1.4 871,680 - HMPREF1058_RS15630 0.65 +1.5 871,734 + HMPREF1058_RS15630 0.68 +0.8 871,734 + HMPREF1058_RS15630 0.68 -1.6 871,744 - HMPREF1058_RS15630 0.69 -2.2 871,748 - HMPREF1058_RS15630 0.69 +0.9 871,872 + HMPREF1058_RS15630 0.77 -1.2 871,882 - HMPREF1058_RS15630 0.77 -1.0 871,988 + HMPREF1058_RS15630 0.84 +0.6 871,988 + HMPREF1058_RS15630 0.84 +0.2 872,060 - HMPREF1058_RS15630 0.89 -0.9 872,142 - -2.2 872,179 + -0.1 872,179 + -0.6 872,179 + +0.5 872,179 + -2.1 872,179 + +1.7 872,180 - -1.1 872,180 - +0.9 872,270 + +1.3 872,270 + -0.6 872,271 - -0.5 872,290 + -1.5 872,290 + -0.6 872,298 + -1.7 872,313 + -1.5 872,331 + -0.9 872,347 + -4.2 872,347 + -0.5 874,834 + -0.4 874,862 + +0.6 874,885 + -0.9 874,923 - +0.8 875,016 - +1.3 875,016 - -0.4 875,050 + HMPREF1058_RS15615 0.11 -1.0 875,051 - HMPREF1058_RS15615 0.11 -2.6 875,051 - HMPREF1058_RS15615 0.11 -0.0 875,080 + HMPREF1058_RS15615 0.14 -2.2 875,081 - HMPREF1058_RS15615 0.14 -1.3 875,152 - HMPREF1058_RS15615 0.21 -0.1 875,313 + HMPREF1058_RS15615 0.35 +0.6 875,313 + HMPREF1058_RS15615 0.35 +0.3 875,314 - HMPREF1058_RS15615 0.35 +2.0
Or see this region's nucleotide sequence