Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14470

Experiment: Sucrose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14480 and HMPREF1058_RS14475 are separated by 15 nucleotidesHMPREF1058_RS14475 and HMPREF1058_RS14470 are separated by 23 nucleotidesHMPREF1058_RS14470 and HMPREF1058_RS14465 are separated by 7 nucleotides HMPREF1058_RS14480: HMPREF1058_RS14480 - hypothetical protein, at 1,191,284 to 1,192,273 _RS14480 HMPREF1058_RS14475: HMPREF1058_RS14475 - SAM-dependent methyltransferase, at 1,192,289 to 1,192,993 _RS14475 HMPREF1058_RS14470: HMPREF1058_RS14470 - hypothetical protein, at 1,193,017 to 1,194,018 _RS14470 HMPREF1058_RS14465: HMPREF1058_RS14465 - enoyl-ACP reductase, at 1,194,026 to 1,194,883 _RS14465 Position (kb) 1193 1194 1195Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1192.114 kb on + strand, within HMPREF1058_RS14480at 1192.275 kb on + strandat 1192.291 kb on - strandat 1192.294 kb on + strandat 1192.296 kb on + strandat 1192.297 kb on - strandat 1192.372 kb on + strand, within HMPREF1058_RS14475at 1192.372 kb on + strand, within HMPREF1058_RS14475at 1192.372 kb on + strand, within HMPREF1058_RS14475at 1192.374 kb on + strand, within HMPREF1058_RS14475at 1192.375 kb on - strand, within HMPREF1058_RS14475at 1192.390 kb on + strandat 1192.441 kb on + strand, within HMPREF1058_RS14475at 1192.457 kb on - strand, within HMPREF1058_RS14475at 1192.462 kb on + strand, within HMPREF1058_RS14475at 1192.463 kb on - strand, within HMPREF1058_RS14475at 1192.507 kb on - strand, within HMPREF1058_RS14475at 1192.528 kb on + strand, within HMPREF1058_RS14475at 1192.566 kb on + strand, within HMPREF1058_RS14475at 1192.619 kb on - strand, within HMPREF1058_RS14475at 1192.619 kb on - strand, within HMPREF1058_RS14475at 1192.621 kb on + strand, within HMPREF1058_RS14475at 1192.664 kb on - strand, within HMPREF1058_RS14475at 1192.676 kb on - strand, within HMPREF1058_RS14475at 1192.792 kb on + strand, within HMPREF1058_RS14475at 1192.792 kb on + strand, within HMPREF1058_RS14475at 1192.874 kb on + strand, within HMPREF1058_RS14475at 1192.875 kb on - strand, within HMPREF1058_RS14475at 1192.883 kb on + strand, within HMPREF1058_RS14475at 1192.923 kb on + strandat 1192.923 kb on + strandat 1192.974 kb on - strandat 1192.978 kb on - strandat 1192.978 kb on - strandat 1192.996 kb on + strandat 1192.996 kb on + strandat 1192.997 kb on - strandat 1193.002 kb on + strandat 1193.016 kb on - strandat 1193.016 kb on - strandat 1193.088 kb on + strandat 1193.138 kb on - strand, within HMPREF1058_RS14470at 1193.172 kb on + strand, within HMPREF1058_RS14470at 1193.194 kb on + strand, within HMPREF1058_RS14470at 1193.194 kb on + strand, within HMPREF1058_RS14470at 1193.195 kb on - strand, within HMPREF1058_RS14470at 1193.197 kb on - strand, within HMPREF1058_RS14470at 1193.197 kb on - strand, within HMPREF1058_RS14470at 1193.197 kb on - strand, within HMPREF1058_RS14470at 1193.197 kb on - strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.198 kb on + strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.199 kb on - strand, within HMPREF1058_RS14470at 1193.202 kb on + strand, within HMPREF1058_RS14470at 1193.203 kb on - strand, within HMPREF1058_RS14470at 1193.228 kb on + strand, within HMPREF1058_RS14470at 1193.230 kb on + strand, within HMPREF1058_RS14470at 1193.230 kb on + strand, within HMPREF1058_RS14470at 1193.231 kb on - strand, within HMPREF1058_RS14470at 1193.231 kb on - strand, within HMPREF1058_RS14470at 1193.231 kb on - strand, within HMPREF1058_RS14470at 1193.305 kb on - strand, within HMPREF1058_RS14470at 1193.344 kb on - strand, within HMPREF1058_RS14470at 1193.379 kb on + strand, within HMPREF1058_RS14470at 1193.385 kb on + strand, within HMPREF1058_RS14470at 1193.390 kb on - strand, within HMPREF1058_RS14470at 1193.463 kb on + strand, within HMPREF1058_RS14470at 1193.464 kb on - strand, within HMPREF1058_RS14470at 1193.499 kb on - strand, within HMPREF1058_RS14470at 1193.499 kb on - strand, within HMPREF1058_RS14470at 1193.499 kb on - strand, within HMPREF1058_RS14470at 1193.501 kb on + strand, within HMPREF1058_RS14470at 1193.502 kb on - strand, within HMPREF1058_RS14470at 1193.514 kb on - strand, within HMPREF1058_RS14470at 1193.515 kb on + strand, within HMPREF1058_RS14470at 1193.535 kb on + strand, within HMPREF1058_RS14470at 1193.537 kb on + strand, within HMPREF1058_RS14470at 1193.537 kb on + strand, within HMPREF1058_RS14470at 1193.537 kb on + strand, within HMPREF1058_RS14470at 1193.548 kb on - strand, within HMPREF1058_RS14470at 1193.563 kb on - strand, within HMPREF1058_RS14470at 1193.600 kb on - strand, within HMPREF1058_RS14470at 1193.631 kb on + strand, within HMPREF1058_RS14470at 1193.631 kb on + strand, within HMPREF1058_RS14470at 1193.632 kb on - strand, within HMPREF1058_RS14470at 1193.632 kb on - strand, within HMPREF1058_RS14470at 1193.748 kb on - strand, within HMPREF1058_RS14470at 1193.769 kb on + strand, within HMPREF1058_RS14470at 1193.804 kb on - strand, within HMPREF1058_RS14470at 1193.871 kb on + strand, within HMPREF1058_RS14470at 1193.885 kb on + strand, within HMPREF1058_RS14470at 1193.886 kb on - strand, within HMPREF1058_RS14470at 1193.886 kb on - strand, within HMPREF1058_RS14470at 1193.920 kb on + strandat 1193.921 kb on - strandat 1193.986 kb on + strandat 1193.986 kb on + strandat 1193.986 kb on + strandat 1193.995 kb on + strandat 1194.003 kb on + strandat 1194.021 kb on - strandat 1194.061 kb on - strandat 1194.061 kb on - strandat 1194.061 kb on - strandat 1194.138 kb on - strand, within HMPREF1058_RS14465at 1194.232 kb on + strand, within HMPREF1058_RS14465at 1194.233 kb on - strand, within HMPREF1058_RS14465at 1194.308 kb on + strand, within HMPREF1058_RS14465at 1194.309 kb on - strand, within HMPREF1058_RS14465at 1194.314 kb on - strand, within HMPREF1058_RS14465at 1194.404 kb on - strand, within HMPREF1058_RS14465at 1194.404 kb on - strand, within HMPREF1058_RS14465at 1194.406 kb on - strand, within HMPREF1058_RS14465at 1194.435 kb on + strand, within HMPREF1058_RS14465at 1194.521 kb on + strand, within HMPREF1058_RS14465at 1194.595 kb on + strand, within HMPREF1058_RS14465at 1194.772 kb on + strand, within HMPREF1058_RS14465at 1194.847 kb on + strandat 1194.877 kb on - strandat 1194.899 kb on - strandat 1194.932 kb on - strandat 1194.977 kb on - strandat 1194.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 20 mM (C)
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1,192,114 + HMPREF1058_RS14480 0.84 -1.1
1,192,275 + -0.2
1,192,291 - +1.1
1,192,294 + -0.6
1,192,296 + -0.2
1,192,297 - -1.8
1,192,372 + HMPREF1058_RS14475 0.12 +0.3
1,192,372 + HMPREF1058_RS14475 0.12 -1.0
1,192,372 + HMPREF1058_RS14475 0.12 -1.7
1,192,374 + HMPREF1058_RS14475 0.12 -1.2
1,192,375 - HMPREF1058_RS14475 0.12 +0.9
1,192,390 + +0.6
1,192,441 + HMPREF1058_RS14475 0.22 -2.6
1,192,457 - HMPREF1058_RS14475 0.24 +1.6
1,192,462 + HMPREF1058_RS14475 0.25 +2.0
1,192,463 - HMPREF1058_RS14475 0.25 +1.6
1,192,507 - HMPREF1058_RS14475 0.31 +0.7
1,192,528 + HMPREF1058_RS14475 0.34 -1.4
1,192,566 + HMPREF1058_RS14475 0.39 -0.6
1,192,619 - HMPREF1058_RS14475 0.47 +1.3
1,192,619 - HMPREF1058_RS14475 0.47 +1.4
1,192,621 + HMPREF1058_RS14475 0.47 +1.8
1,192,664 - HMPREF1058_RS14475 0.53 +0.8
1,192,676 - HMPREF1058_RS14475 0.55 +1.2
1,192,792 + HMPREF1058_RS14475 0.71 +0.7
1,192,792 + HMPREF1058_RS14475 0.71 -0.4
1,192,874 + HMPREF1058_RS14475 0.83 +1.0
1,192,875 - HMPREF1058_RS14475 0.83 +0.2
1,192,883 + HMPREF1058_RS14475 0.84 +0.2
1,192,923 + -0.3
1,192,923 + +0.2
1,192,974 - +0.7
1,192,978 - -0.5
1,192,978 - -0.4
1,192,996 + -1.2
1,192,996 + +0.0
1,192,997 - +1.3
1,193,002 + -0.1
1,193,016 - -1.2
1,193,016 - -0.5
1,193,088 + +2.2
1,193,138 - HMPREF1058_RS14470 0.12 +2.0
1,193,172 + HMPREF1058_RS14470 0.15 +2.4
1,193,194 + HMPREF1058_RS14470 0.18 -1.0
1,193,194 + HMPREF1058_RS14470 0.18 -1.4
1,193,195 - HMPREF1058_RS14470 0.18 +3.1
1,193,197 - HMPREF1058_RS14470 0.18 +2.3
1,193,197 - HMPREF1058_RS14470 0.18 +2.0
1,193,197 - HMPREF1058_RS14470 0.18 +2.4
1,193,197 - HMPREF1058_RS14470 0.18 +2.4
1,193,198 + HMPREF1058_RS14470 0.18 -1.6
1,193,198 + HMPREF1058_RS14470 0.18 +2.2
1,193,198 + HMPREF1058_RS14470 0.18 -0.1
1,193,198 + HMPREF1058_RS14470 0.18 +0.7
1,193,198 + HMPREF1058_RS14470 0.18 +1.4
1,193,198 + HMPREF1058_RS14470 0.18 +1.5
1,193,199 - HMPREF1058_RS14470 0.18 +2.4
1,193,199 - HMPREF1058_RS14470 0.18 +3.7
1,193,199 - HMPREF1058_RS14470 0.18 +2.9
1,193,199 - HMPREF1058_RS14470 0.18 +1.9
1,193,199 - HMPREF1058_RS14470 0.18 +3.7
1,193,199 - HMPREF1058_RS14470 0.18 +3.0
1,193,199 - HMPREF1058_RS14470 0.18 +3.1
1,193,199 - HMPREF1058_RS14470 0.18 +2.8
1,193,202 + HMPREF1058_RS14470 0.18 -0.1
1,193,203 - HMPREF1058_RS14470 0.19 +2.5
1,193,228 + HMPREF1058_RS14470 0.21 +0.4
1,193,230 + HMPREF1058_RS14470 0.21 +1.0
1,193,230 + HMPREF1058_RS14470 0.21 +2.0
1,193,231 - HMPREF1058_RS14470 0.21 +3.0
1,193,231 - HMPREF1058_RS14470 0.21 +2.5
1,193,231 - HMPREF1058_RS14470 0.21 +2.9
1,193,305 - HMPREF1058_RS14470 0.29 +2.9
1,193,344 - HMPREF1058_RS14470 0.33 +2.6
1,193,379 + HMPREF1058_RS14470 0.36 +0.9
1,193,385 + HMPREF1058_RS14470 0.37 -1.2
1,193,390 - HMPREF1058_RS14470 0.37 +3.0
1,193,463 + HMPREF1058_RS14470 0.45 +0.6
1,193,464 - HMPREF1058_RS14470 0.45 +2.2
1,193,499 - HMPREF1058_RS14470 0.48 +2.4
1,193,499 - HMPREF1058_RS14470 0.48 +2.7
1,193,499 - HMPREF1058_RS14470 0.48 +1.9
1,193,501 + HMPREF1058_RS14470 0.48 +1.4
1,193,502 - HMPREF1058_RS14470 0.48 +2.0
1,193,514 - HMPREF1058_RS14470 0.50 +3.1
1,193,515 + HMPREF1058_RS14470 0.50 +1.1
1,193,535 + HMPREF1058_RS14470 0.52 +0.7
1,193,537 + HMPREF1058_RS14470 0.52 +0.8
1,193,537 + HMPREF1058_RS14470 0.52 -0.2
1,193,537 + HMPREF1058_RS14470 0.52 +1.5
1,193,548 - HMPREF1058_RS14470 0.53 +2.4
1,193,563 - HMPREF1058_RS14470 0.54 +3.0
1,193,600 - HMPREF1058_RS14470 0.58 +1.6
1,193,631 + HMPREF1058_RS14470 0.61 -1.2
1,193,631 + HMPREF1058_RS14470 0.61 -1.4
1,193,632 - HMPREF1058_RS14470 0.61 +2.4
1,193,632 - HMPREF1058_RS14470 0.61 +2.5
1,193,748 - HMPREF1058_RS14470 0.73 +2.9
1,193,769 + HMPREF1058_RS14470 0.75 +0.4
1,193,804 - HMPREF1058_RS14470 0.79 +2.6
1,193,871 + HMPREF1058_RS14470 0.85 -1.0
1,193,885 + HMPREF1058_RS14470 0.87 +1.4
1,193,886 - HMPREF1058_RS14470 0.87 +2.0
1,193,886 - HMPREF1058_RS14470 0.87 +1.5
1,193,920 + +0.5
1,193,921 - +2.6
1,193,986 + +1.4
1,193,986 + +1.1
1,193,986 + +1.5
1,193,995 + -1.1
1,194,003 + +1.9
1,194,021 - +1.7
1,194,061 - +1.8
1,194,061 - +0.5
1,194,061 - +0.7
1,194,138 - HMPREF1058_RS14465 0.13 -1.2
1,194,232 + HMPREF1058_RS14465 0.24 -1.0
1,194,233 - HMPREF1058_RS14465 0.24 -0.4
1,194,308 + HMPREF1058_RS14465 0.33 +0.2
1,194,309 - HMPREF1058_RS14465 0.33 -0.1
1,194,314 - HMPREF1058_RS14465 0.34 +0.4
1,194,404 - HMPREF1058_RS14465 0.44 +1.6
1,194,404 - HMPREF1058_RS14465 0.44 +1.2
1,194,406 - HMPREF1058_RS14465 0.44 +0.6
1,194,435 + HMPREF1058_RS14465 0.48 -0.6
1,194,521 + HMPREF1058_RS14465 0.58 -0.6
1,194,595 + HMPREF1058_RS14465 0.66 -0.1
1,194,772 + HMPREF1058_RS14465 0.87 -0.6
1,194,847 + +0.9
1,194,877 - -1.2
1,194,899 - +0.6
1,194,932 - -1.1
1,194,977 - -1.2
1,194,997 - +0.1

Or see this region's nucleotide sequence