Experiment: Sucrose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06460 and HMPREF1058_RS06455 are separated by 351 nucleotides HMPREF1058_RS06455 and HMPREF1058_RS06450 are separated by 223 nucleotides HMPREF1058_RS06450 and HMPREF1058_RS06445 are separated by 31 nucleotides
HMPREF1058_RS06460: HMPREF1058_RS06460 - hypothetical protein, at 473,895 to 474,383
_RS06460
HMPREF1058_RS06455: HMPREF1058_RS06455 - DUF4248 domain-containing protein, at 474,735 to 474,953
_RS06455
HMPREF1058_RS06450: HMPREF1058_RS06450 - hypothetical protein, at 475,177 to 476,253
_RS06450
HMPREF1058_RS06445: HMPREF1058_RS06445 - hypothetical protein, at 476,285 to 478,360
_RS06445
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 474.373 kb on + strand at 474.373 kb on + strand at 474.374 kb on - strand at 474.512 kb on - strand at 474.547 kb on + strand at 474.592 kb on + strand at 474.726 kb on - strand at 474.751 kb on + strand at 474.787 kb on - strand, within HMPREF1058_RS06455 at 474.903 kb on + strand, within HMPREF1058_RS06455 at 474.903 kb on + strand, within HMPREF1058_RS06455 at 474.904 kb on - strand, within HMPREF1058_RS06455 at 474.904 kb on - strand, within HMPREF1058_RS06455 at 475.074 kb on + strand at 475.075 kb on - strand at 475.076 kb on + strand at 475.116 kb on - strand at 475.117 kb on + strand at 475.118 kb on - strand at 475.186 kb on + strand at 475.352 kb on + strand, within HMPREF1058_RS06450 at 475.352 kb on + strand, within HMPREF1058_RS06450 at 475.353 kb on - strand, within HMPREF1058_RS06450 at 475.354 kb on + strand, within HMPREF1058_RS06450 at 475.670 kb on + strand, within HMPREF1058_RS06450 at 475.771 kb on + strand, within HMPREF1058_RS06450 at 475.771 kb on + strand, within HMPREF1058_RS06450 at 475.838 kb on + strand, within HMPREF1058_RS06450 at 475.945 kb on + strand, within HMPREF1058_RS06450 at 475.947 kb on + strand, within HMPREF1058_RS06450 at 476.113 kb on - strand, within HMPREF1058_RS06450 at 476.238 kb on - strand at 476.238 kb on - strand at 476.238 kb on - strand at 476.262 kb on + strand at 476.268 kb on - strand at 476.268 kb on - strand at 476.270 kb on + strand at 476.270 kb on + strand at 476.271 kb on - strand at 476.271 kb on - strand at 476.274 kb on + strand at 476.274 kb on + strand at 476.275 kb on - strand at 476.279 kb on - strand at 476.281 kb on - strand at 476.281 kb on - strand at 476.287 kb on - strand at 476.529 kb on + strand, within HMPREF1058_RS06445 at 476.594 kb on + strand, within HMPREF1058_RS06445 at 476.691 kb on - strand, within HMPREF1058_RS06445 at 476.694 kb on + strand, within HMPREF1058_RS06445 at 476.698 kb on + strand, within HMPREF1058_RS06445 at 476.721 kb on - strand, within HMPREF1058_RS06445 at 476.805 kb on - strand, within HMPREF1058_RS06445 at 476.843 kb on + strand, within HMPREF1058_RS06445 at 476.843 kb on + strand, within HMPREF1058_RS06445 at 476.911 kb on - strand, within HMPREF1058_RS06445 at 476.911 kb on - strand, within HMPREF1058_RS06445 at 477.094 kb on - strand, within HMPREF1058_RS06445 at 477.095 kb on + strand, within HMPREF1058_RS06445 at 477.095 kb on + strand, within HMPREF1058_RS06445 at 477.095 kb on + strand, within HMPREF1058_RS06445 at 477.095 kb on + strand, within HMPREF1058_RS06445 at 477.096 kb on - strand, within HMPREF1058_RS06445
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 20 mM (C) remove 474,373 + +0.5 474,373 + -2.3 474,374 - +0.6 474,512 - +0.3 474,547 + -1.7 474,592 + +2.9 474,726 - +0.8 474,751 + -0.1 474,787 - HMPREF1058_RS06455 0.24 +2.0 474,903 + HMPREF1058_RS06455 0.77 -1.0 474,903 + HMPREF1058_RS06455 0.77 +0.9 474,904 - HMPREF1058_RS06455 0.77 +0.9 474,904 - HMPREF1058_RS06455 0.77 +1.4 475,074 + +1.5 475,075 - -1.5 475,076 + -1.1 475,116 - -0.1 475,117 + +0.5 475,118 - +0.9 475,186 + -2.4 475,352 + HMPREF1058_RS06450 0.16 -1.2 475,352 + HMPREF1058_RS06450 0.16 +1.3 475,353 - HMPREF1058_RS06450 0.16 +0.2 475,354 + HMPREF1058_RS06450 0.16 -1.4 475,670 + HMPREF1058_RS06450 0.46 +3.2 475,771 + HMPREF1058_RS06450 0.55 -1.0 475,771 + HMPREF1058_RS06450 0.55 -0.1 475,838 + HMPREF1058_RS06450 0.61 +1.1 475,945 + HMPREF1058_RS06450 0.71 +0.7 475,947 + HMPREF1058_RS06450 0.71 +1.0 476,113 - HMPREF1058_RS06450 0.87 +0.5 476,238 - -0.1 476,238 - +0.7 476,238 - -2.0 476,262 + +0.6 476,268 - +1.2 476,268 - +2.2 476,270 + -1.1 476,270 + -1.0 476,271 - -1.0 476,271 - -1.3 476,274 + -0.7 476,274 + -2.3 476,275 - -1.2 476,279 - -0.5 476,281 - -0.3 476,281 - +0.1 476,287 - -0.3 476,529 + HMPREF1058_RS06445 0.12 +0.5 476,594 + HMPREF1058_RS06445 0.15 -1.0 476,691 - HMPREF1058_RS06445 0.20 -0.5 476,694 + HMPREF1058_RS06445 0.20 +0.1 476,698 + HMPREF1058_RS06445 0.20 +0.4 476,721 - HMPREF1058_RS06445 0.21 -0.2 476,805 - HMPREF1058_RS06445 0.25 +0.7 476,843 + HMPREF1058_RS06445 0.27 -1.7 476,843 + HMPREF1058_RS06445 0.27 -0.8 476,911 - HMPREF1058_RS06445 0.30 -1.4 476,911 - HMPREF1058_RS06445 0.30 +1.4 477,094 - HMPREF1058_RS06445 0.39 +0.2 477,095 + HMPREF1058_RS06445 0.39 -0.7 477,095 + HMPREF1058_RS06445 0.39 +0.3 477,095 + HMPREF1058_RS06445 0.39 +2.0 477,095 + HMPREF1058_RS06445 0.39 +0.2 477,096 - HMPREF1058_RS06445 0.39 -2.2
Or see this region's nucleotide sequence