Experiment: Sucrose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06225 and HMPREF1058_RS06220 are separated by 1 nucleotides HMPREF1058_RS06220 and HMPREF1058_RS0119805 are separated by 324 nucleotides HMPREF1058_RS0119805 and HMPREF1058_RS06215 overlap by 11 nucleotides
HMPREF1058_RS06225: HMPREF1058_RS06225 - pyridoxal phosphate-dependent aminotransferase, at 531,112 to 532,314
_RS06225
HMPREF1058_RS06220: HMPREF1058_RS06220 - ABC transporter permease, at 532,316 to 533,560
_RS06220
HMPREF1058_RS0119805: HMPREF1058_RS0119805 - lysine exporter LysO family protein, at 533,885 to 534,505
_RS0119805
HMPREF1058_RS06215: HMPREF1058_RS06215 - LysO family transporter, at 534,495 to 534,782
_RS06215
Position (kb) 532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 531.487 kb on + strand, within HMPREF1058_RS06225 at 531.609 kb on + strand, within HMPREF1058_RS06225 at 531.703 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 533.614 kb on + strand at 533.642 kb on + strand at 533.664 kb on + strand at 533.665 kb on - strand at 533.690 kb on - strand at 533.701 kb on + strand at 533.711 kb on + strand at 533.734 kb on - strand at 533.797 kb on + strand at 533.853 kb on - strand at 533.862 kb on + strand at 533.864 kb on + strand at 533.864 kb on + strand at 533.864 kb on + strand at 533.865 kb on - strand at 533.867 kb on + strand at 533.868 kb on - strand at 533.924 kb on + strand at 533.924 kb on + strand at 533.925 kb on - strand at 533.925 kb on - strand at 533.930 kb on + strand at 534.077 kb on + strand, within HMPREF1058_RS0119805 at 534.104 kb on - strand, within HMPREF1058_RS0119805 at 534.113 kb on + strand, within HMPREF1058_RS0119805 at 534.202 kb on - strand, within HMPREF1058_RS0119805 at 534.396 kb on - strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.410 kb on + strand, within HMPREF1058_RS0119805 at 534.488 kb on + strand at 534.539 kb on - strand, within HMPREF1058_RS06215 at 534.541 kb on - strand, within HMPREF1058_RS06215
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 20 mM (C) remove 531,487 + HMPREF1058_RS06225 0.31 -2.2 531,609 + HMPREF1058_RS06225 0.41 -1.4 531,703 + HMPREF1058_RS06225 0.49 -1.2 531,756 + HMPREF1058_RS06225 0.54 -1.8 531,756 + HMPREF1058_RS06225 0.54 -0.1 531,756 + HMPREF1058_RS06225 0.54 -1.4 531,756 + HMPREF1058_RS06225 0.54 -1.0 531,756 + HMPREF1058_RS06225 0.54 -2.3 531,756 + HMPREF1058_RS06225 0.54 -3.3 533,614 + -0.9 533,642 + -0.2 533,664 + -3.1 533,665 - +0.0 533,690 - -0.9 533,701 + -1.3 533,711 + +0.9 533,734 - -2.2 533,797 + +1.3 533,853 - -1.4 533,862 + +1.0 533,864 + +0.2 533,864 + -0.1 533,864 + -0.1 533,865 - +1.2 533,867 + +0.4 533,868 - -0.7 533,924 + +0.5 533,924 + -1.8 533,925 - +1.2 533,925 - +1.9 533,930 + -2.7 534,077 + HMPREF1058_RS0119805 0.31 -0.8 534,104 - HMPREF1058_RS0119805 0.35 +0.8 534,113 + HMPREF1058_RS0119805 0.37 +0.7 534,202 - HMPREF1058_RS0119805 0.51 +0.3 534,396 - HMPREF1058_RS0119805 0.82 -0.1 534,399 + HMPREF1058_RS0119805 0.83 -1.8 534,399 + HMPREF1058_RS0119805 0.83 +0.8 534,399 + HMPREF1058_RS0119805 0.83 -0.6 534,400 - HMPREF1058_RS0119805 0.83 -0.2 534,400 - HMPREF1058_RS0119805 0.83 -0.9 534,400 - HMPREF1058_RS0119805 0.83 +0.4 534,400 - HMPREF1058_RS0119805 0.83 +1.3 534,401 + HMPREF1058_RS0119805 0.83 +1.2 534,401 + HMPREF1058_RS0119805 0.83 -1.6 534,401 + HMPREF1058_RS0119805 0.83 -0.0 534,404 + HMPREF1058_RS0119805 0.84 -1.3 534,404 + HMPREF1058_RS0119805 0.84 -2.1 534,404 + HMPREF1058_RS0119805 0.84 +0.7 534,405 - HMPREF1058_RS0119805 0.84 +0.0 534,405 - HMPREF1058_RS0119805 0.84 -1.1 534,405 - HMPREF1058_RS0119805 0.84 -0.3 534,408 + HMPREF1058_RS0119805 0.84 -1.1 534,408 + HMPREF1058_RS0119805 0.84 +0.6 534,408 + HMPREF1058_RS0119805 0.84 +0.7 534,408 + HMPREF1058_RS0119805 0.84 +2.2 534,409 - HMPREF1058_RS0119805 0.84 -0.5 534,409 - HMPREF1058_RS0119805 0.84 -3.7 534,409 - HMPREF1058_RS0119805 0.84 +0.3 534,410 + HMPREF1058_RS0119805 0.85 -0.2 534,488 + -1.9 534,539 - HMPREF1058_RS06215 0.15 +1.3 534,541 - HMPREF1058_RS06215 0.16 -1.2
Or see this region's nucleotide sequence