Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03840

Experiment: Sucrose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03845 and HMPREF1058_RS03840 are separated by 96 nucleotidesHMPREF1058_RS03840 and HMPREF1058_RS03835 are separated by 151 nucleotides HMPREF1058_RS03845: HMPREF1058_RS03845 - ABC transporter permease, at 173,485 to 174,591 _RS03845 HMPREF1058_RS03840: HMPREF1058_RS03840 - fructose-6-phosphate aldolase, at 174,688 to 175,344 _RS03840 HMPREF1058_RS03835: HMPREF1058_RS03835 - AraC family transcriptional regulator, at 175,496 to 176,419 _RS03835 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 173.705 kb on + strand, within HMPREF1058_RS03845at 173.705 kb on + strand, within HMPREF1058_RS03845at 173.705 kb on + strand, within HMPREF1058_RS03845at 173.706 kb on - strand, within HMPREF1058_RS03845at 173.723 kb on - strand, within HMPREF1058_RS03845at 173.723 kb on - strand, within HMPREF1058_RS03845at 173.878 kb on + strand, within HMPREF1058_RS03845at 173.889 kb on + strand, within HMPREF1058_RS03845at 173.890 kb on - strand, within HMPREF1058_RS03845at 173.957 kb on + strand, within HMPREF1058_RS03845at 174.000 kb on + strand, within HMPREF1058_RS03845at 174.001 kb on - strand, within HMPREF1058_RS03845at 174.006 kb on - strand, within HMPREF1058_RS03845at 174.006 kb on - strand, within HMPREF1058_RS03845at 174.006 kb on - strand, within HMPREF1058_RS03845at 174.010 kb on - strand, within HMPREF1058_RS03845at 174.316 kb on + strand, within HMPREF1058_RS03845at 174.408 kb on + strand, within HMPREF1058_RS03845at 174.481 kb on + strandat 174.537 kb on + strandat 174.631 kb on - strandat 174.762 kb on - strand, within HMPREF1058_RS03840at 174.765 kb on + strand, within HMPREF1058_RS03840at 174.765 kb on + strand, within HMPREF1058_RS03840at 174.766 kb on - strand, within HMPREF1058_RS03840at 174.819 kb on + strand, within HMPREF1058_RS03840at 174.820 kb on - strand, within HMPREF1058_RS03840at 174.827 kb on - strand, within HMPREF1058_RS03840at 174.836 kb on + strand, within HMPREF1058_RS03840at 174.837 kb on - strand, within HMPREF1058_RS03840at 174.841 kb on - strand, within HMPREF1058_RS03840at 174.841 kb on - strand, within HMPREF1058_RS03840at 175.046 kb on + strand, within HMPREF1058_RS03840at 175.047 kb on - strand, within HMPREF1058_RS03840at 175.072 kb on + strand, within HMPREF1058_RS03840at 175.072 kb on + strand, within HMPREF1058_RS03840at 175.073 kb on - strand, within HMPREF1058_RS03840at 175.073 kb on - strand, within HMPREF1058_RS03840at 175.150 kb on + strand, within HMPREF1058_RS03840at 175.150 kb on + strand, within HMPREF1058_RS03840at 175.166 kb on - strand, within HMPREF1058_RS03840at 175.205 kb on + strand, within HMPREF1058_RS03840at 175.206 kb on - strand, within HMPREF1058_RS03840at 175.206 kb on - strand, within HMPREF1058_RS03840at 175.206 kb on - strand, within HMPREF1058_RS03840at 175.209 kb on + strand, within HMPREF1058_RS03840at 175.209 kb on + strand, within HMPREF1058_RS03840at 175.211 kb on + strand, within HMPREF1058_RS03840at 175.214 kb on + strand, within HMPREF1058_RS03840at 175.214 kb on + strand, within HMPREF1058_RS03840at 175.215 kb on - strand, within HMPREF1058_RS03840at 175.215 kb on - strand, within HMPREF1058_RS03840at 175.242 kb on - strand, within HMPREF1058_RS03840at 175.278 kb on - strand, within HMPREF1058_RS03840at 175.296 kb on + strandat 175.304 kb on + strandat 175.424 kb on + strandat 175.576 kb on + strandat 175.583 kb on - strandat 175.585 kb on + strandat 175.658 kb on + strand, within HMPREF1058_RS03835at 175.658 kb on + strand, within HMPREF1058_RS03835at 175.658 kb on + strand, within HMPREF1058_RS03835at 175.661 kb on - strand, within HMPREF1058_RS03835at 175.670 kb on - strand, within HMPREF1058_RS03835at 175.705 kb on - strand, within HMPREF1058_RS03835at 175.772 kb on + strand, within HMPREF1058_RS03835at 175.773 kb on - strand, within HMPREF1058_RS03835at 175.815 kb on + strand, within HMPREF1058_RS03835at 175.823 kb on - strand, within HMPREF1058_RS03835at 175.935 kb on - strand, within HMPREF1058_RS03835at 175.942 kb on - strand, within HMPREF1058_RS03835at 176.029 kb on - strand, within HMPREF1058_RS03835at 176.092 kb on - strand, within HMPREF1058_RS03835at 176.116 kb on - strand, within HMPREF1058_RS03835at 176.184 kb on - strand, within HMPREF1058_RS03835at 176.197 kb on - strand, within HMPREF1058_RS03835at 176.244 kb on - strand, within HMPREF1058_RS03835at 176.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 20 mM (C)
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173,705 + HMPREF1058_RS03845 0.20 -1.9
173,705 + HMPREF1058_RS03845 0.20 +0.3
173,705 + HMPREF1058_RS03845 0.20 +1.8
173,706 - HMPREF1058_RS03845 0.20 -0.5
173,723 - HMPREF1058_RS03845 0.21 -1.3
173,723 - HMPREF1058_RS03845 0.21 +0.8
173,878 + HMPREF1058_RS03845 0.36 +1.6
173,889 + HMPREF1058_RS03845 0.36 +1.9
173,890 - HMPREF1058_RS03845 0.37 +0.9
173,957 + HMPREF1058_RS03845 0.43 +2.0
174,000 + HMPREF1058_RS03845 0.47 -0.5
174,001 - HMPREF1058_RS03845 0.47 -1.3
174,006 - HMPREF1058_RS03845 0.47 -0.9
174,006 - HMPREF1058_RS03845 0.47 +0.8
174,006 - HMPREF1058_RS03845 0.47 -0.8
174,010 - HMPREF1058_RS03845 0.47 -1.2
174,316 + HMPREF1058_RS03845 0.75 -0.8
174,408 + HMPREF1058_RS03845 0.83 +0.3
174,481 + +1.1
174,537 + -2.9
174,631 - -3.2
174,762 - HMPREF1058_RS03840 0.11 +0.0
174,765 + HMPREF1058_RS03840 0.12 -0.8
174,765 + HMPREF1058_RS03840 0.12 +1.8
174,766 - HMPREF1058_RS03840 0.12 +0.7
174,819 + HMPREF1058_RS03840 0.20 -0.2
174,820 - HMPREF1058_RS03840 0.20 +0.6
174,827 - HMPREF1058_RS03840 0.21 +0.5
174,836 + HMPREF1058_RS03840 0.23 -1.5
174,837 - HMPREF1058_RS03840 0.23 -1.9
174,841 - HMPREF1058_RS03840 0.23 +2.4
174,841 - HMPREF1058_RS03840 0.23 +2.2
175,046 + HMPREF1058_RS03840 0.54 +0.3
175,047 - HMPREF1058_RS03840 0.55 -1.3
175,072 + HMPREF1058_RS03840 0.58 +0.0
175,072 + HMPREF1058_RS03840 0.58 -0.8
175,073 - HMPREF1058_RS03840 0.59 +2.0
175,073 - HMPREF1058_RS03840 0.59 -2.6
175,150 + HMPREF1058_RS03840 0.70 -1.9
175,150 + HMPREF1058_RS03840 0.70 +0.3
175,166 - HMPREF1058_RS03840 0.73 -0.8
175,205 + HMPREF1058_RS03840 0.79 -0.1
175,206 - HMPREF1058_RS03840 0.79 +0.3
175,206 - HMPREF1058_RS03840 0.79 -0.8
175,206 - HMPREF1058_RS03840 0.79 -0.2
175,209 + HMPREF1058_RS03840 0.79 -0.8
175,209 + HMPREF1058_RS03840 0.79 +1.1
175,211 + HMPREF1058_RS03840 0.80 +2.2
175,214 + HMPREF1058_RS03840 0.80 +1.5
175,214 + HMPREF1058_RS03840 0.80 -0.6
175,215 - HMPREF1058_RS03840 0.80 +1.5
175,215 - HMPREF1058_RS03840 0.80 +0.7
175,242 - HMPREF1058_RS03840 0.84 -0.6
175,278 - HMPREF1058_RS03840 0.90 -0.5
175,296 + -0.3
175,304 + +0.4
175,424 + +0.0
175,576 + -0.4
175,583 - +0.3
175,585 + -0.5
175,658 + HMPREF1058_RS03835 0.18 -1.4
175,658 + HMPREF1058_RS03835 0.18 +1.6
175,658 + HMPREF1058_RS03835 0.18 +0.9
175,661 - HMPREF1058_RS03835 0.18 -1.8
175,670 - HMPREF1058_RS03835 0.19 -1.2
175,705 - HMPREF1058_RS03835 0.23 +0.3
175,772 + HMPREF1058_RS03835 0.30 +0.5
175,773 - HMPREF1058_RS03835 0.30 -1.1
175,815 + HMPREF1058_RS03835 0.35 -0.4
175,823 - HMPREF1058_RS03835 0.35 -1.1
175,935 - HMPREF1058_RS03835 0.48 -0.8
175,942 - HMPREF1058_RS03835 0.48 -1.0
176,029 - HMPREF1058_RS03835 0.58 -0.5
176,092 - HMPREF1058_RS03835 0.65 +0.5
176,116 - HMPREF1058_RS03835 0.67 -1.1
176,184 - HMPREF1058_RS03835 0.74 -0.4
176,197 - HMPREF1058_RS03835 0.76 -0.4
176,244 - HMPREF1058_RS03835 0.81 -2.2
176,248 - +2.6

Or see this region's nucleotide sequence