Strain Fitness in Rahnella sp. WP5 around EX31_RS23490

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23480 and EX31_RS23485 are separated by 11 nucleotidesEX31_RS23485 and EX31_RS23490 are separated by 113 nucleotidesEX31_RS23490 and EX31_RS23495 are separated by 129 nucleotides EX31_RS23480: EX31_RS23480 - Tol-Pal system protein TolQ, at 465,007 to 465,696 _RS23480 EX31_RS23485: EX31_RS23485 - colicin uptake protein TolR, at 465,708 to 466,139 _RS23485 EX31_RS23490: EX31_RS23490 - cell envelope integrity protein TolA, at 466,253 to 467,488 _RS23490 EX31_RS23495: EX31_RS23495 - Tol-Pal system protein TolB, at 467,618 to 468,910 _RS23495 Position (kb) 466 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 465.345 kb on + strand, within EX31_RS23480at 465.354 kb on + strand, within EX31_RS23480at 465.421 kb on + strand, within EX31_RS23480at 465.421 kb on + strand, within EX31_RS23480at 465.421 kb on + strand, within EX31_RS23480at 465.421 kb on + strand, within EX31_RS23480at 465.422 kb on - strand, within EX31_RS23480at 465.422 kb on - strand, within EX31_RS23480at 465.423 kb on + strand, within EX31_RS23480at 465.423 kb on + strand, within EX31_RS23480at 465.423 kb on + strand, within EX31_RS23480at 465.580 kb on + strand, within EX31_RS23480at 465.690 kb on + strandat 465.694 kb on + strandat 465.694 kb on + strandat 465.707 kb on + strandat 465.781 kb on + strand, within EX31_RS23485at 465.869 kb on + strand, within EX31_RS23485at 465.930 kb on + strand, within EX31_RS23485at 465.957 kb on - strand, within EX31_RS23485at 466.027 kb on + strand, within EX31_RS23485at 466.059 kb on + strand, within EX31_RS23485at 466.070 kb on + strand, within EX31_RS23485at 466.073 kb on + strand, within EX31_RS23485at 466.133 kb on + strandat 466.133 kb on + strandat 466.133 kb on + strandat 466.133 kb on + strandat 466.134 kb on - strandat 466.143 kb on + strandat 466.143 kb on + strandat 466.143 kb on + strandat 466.147 kb on + strandat 466.147 kb on + strandat 466.147 kb on + strandat 466.147 kb on + strandat 466.147 kb on + strandat 466.148 kb on - strandat 466.154 kb on + strandat 466.155 kb on - strandat 466.155 kb on - strandat 466.161 kb on + strandat 466.161 kb on + strandat 466.161 kb on + strandat 466.161 kb on + strandat 466.161 kb on + strandat 466.161 kb on + strandat 466.162 kb on - strandat 466.162 kb on - strandat 466.190 kb on + strandat 466.190 kb on + strandat 466.196 kb on + strandat 466.197 kb on - strandat 466.226 kb on + strandat 466.229 kb on + strandat 466.230 kb on - strandat 466.249 kb on + strandat 466.324 kb on + strandat 466.333 kb on + strandat 466.369 kb on + strandat 466.445 kb on + strand, within EX31_RS23490at 466.771 kb on + strand, within EX31_RS23490at 467.237 kb on + strand, within EX31_RS23490at 467.237 kb on + strand, within EX31_RS23490at 467.237 kb on + strand, within EX31_RS23490at 467.237 kb on + strand, within EX31_RS23490at 467.276 kb on + strand, within EX31_RS23490at 467.291 kb on + strand, within EX31_RS23490at 467.291 kb on + strand, within EX31_RS23490at 467.293 kb on + strand, within EX31_RS23490at 467.293 kb on + strand, within EX31_RS23490at 467.537 kb on + strandat 467.537 kb on + strandat 467.538 kb on - strandat 467.538 kb on - strandat 467.543 kb on + strandat 467.595 kb on + strandat 467.595 kb on + strandat 467.595 kb on + strandat 467.605 kb on + strandat 467.605 kb on + strandat 467.614 kb on + strandat 467.614 kb on + strandat 467.614 kb on + strandat 467.614 kb on + strandat 467.614 kb on + strandat 467.614 kb on + strandat 467.713 kb on + strandat 467.713 kb on + strandat 467.713 kb on + strandat 467.802 kb on + strand, within EX31_RS23495at 467.802 kb on + strand, within EX31_RS23495at 467.802 kb on + strand, within EX31_RS23495at 467.802 kb on + strand, within EX31_RS23495at 467.806 kb on + strand, within EX31_RS23495at 467.806 kb on + strand, within EX31_RS23495at 467.827 kb on + strand, within EX31_RS23495at 467.827 kb on + strand, within EX31_RS23495at 467.842 kb on + strand, within EX31_RS23495at 467.842 kb on + strand, within EX31_RS23495at 467.951 kb on + strand, within EX31_RS23495at 467.951 kb on + strand, within EX31_RS23495at 467.951 kb on + strand, within EX31_RS23495at 467.951 kb on + strand, within EX31_RS23495at 467.977 kb on + strand, within EX31_RS23495at 467.977 kb on + strand, within EX31_RS23495at 468.122 kb on + strand, within EX31_RS23495at 468.122 kb on + strand, within EX31_RS23495at 468.122 kb on + strand, within EX31_RS23495at 468.124 kb on + strand, within EX31_RS23495at 468.124 kb on + strand, within EX31_RS23495at 468.185 kb on + strand, within EX31_RS23495at 468.185 kb on + strand, within EX31_RS23495at 468.263 kb on + strand, within EX31_RS23495at 468.263 kb on + strand, within EX31_RS23495at 468.428 kb on + strand, within EX31_RS23495at 468.428 kb on + strand, within EX31_RS23495

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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465,345 + EX31_RS23480 0.49 -0.7
465,354 + EX31_RS23480 0.50 +0.0
465,421 + EX31_RS23480 0.60 -0.6
465,421 + EX31_RS23480 0.60 -1.4
465,421 + EX31_RS23480 0.60 -1.9
465,421 + EX31_RS23480 0.60 +1.6
465,422 - EX31_RS23480 0.60 +2.0
465,422 - EX31_RS23480 0.60 -0.4
465,423 + EX31_RS23480 0.60 -1.9
465,423 + EX31_RS23480 0.60 -1.2
465,423 + EX31_RS23480 0.60 -2.6
465,580 + EX31_RS23480 0.83 -0.4
465,690 + -0.5
465,694 + -0.5
465,694 + +0.1
465,707 + -2.3
465,781 + EX31_RS23485 0.17 -1.4
465,869 + EX31_RS23485 0.37 +1.0
465,930 + EX31_RS23485 0.51 -0.8
465,957 - EX31_RS23485 0.58 +0.4
466,027 + EX31_RS23485 0.74 -1.4
466,059 + EX31_RS23485 0.81 -0.6
466,070 + EX31_RS23485 0.84 -0.8
466,073 + EX31_RS23485 0.84 -0.0
466,133 + +1.1
466,133 + +1.2
466,133 + -0.3
466,133 + -0.3
466,134 - -2.0
466,143 + +1.7
466,143 + -0.0
466,143 + -0.4
466,147 + -1.3
466,147 + +0.8
466,147 + -1.6
466,147 + +0.2
466,147 + +2.1
466,148 - -0.3
466,154 + +0.4
466,155 - -0.0
466,155 - -1.4
466,161 + -0.8
466,161 + -0.8
466,161 + +0.0
466,161 + -0.1
466,161 + +0.4
466,161 + -0.0
466,162 - -0.6
466,162 - -0.4
466,190 + +0.4
466,190 + +1.2
466,196 + +0.3
466,197 - -1.0
466,226 + -1.2
466,229 + +0.6
466,230 - -2.8
466,249 + -1.2
466,324 + -1.2
466,333 + -0.8
466,369 + -1.9
466,445 + EX31_RS23490 0.16 +0.4
466,771 + EX31_RS23490 0.42 -0.4
467,237 + EX31_RS23490 0.80 -0.4
467,237 + EX31_RS23490 0.80 -1.0
467,237 + EX31_RS23490 0.80 -1.6
467,237 + EX31_RS23490 0.80 -0.6
467,276 + EX31_RS23490 0.83 -1.0
467,291 + EX31_RS23490 0.84 -0.2
467,291 + EX31_RS23490 0.84 -1.7
467,293 + EX31_RS23490 0.84 -1.6
467,293 + EX31_RS23490 0.84 -1.8
467,537 + -0.5
467,537 + -0.1
467,538 - -1.6
467,538 - -1.5
467,543 + -0.1
467,595 + +1.0
467,595 + -0.8
467,595 + +0.3
467,605 + -0.5
467,605 + -1.0
467,614 + -1.8
467,614 + -0.8
467,614 + -1.6
467,614 + -0.0
467,614 + -2.1
467,614 + -1.2
467,713 + -0.4
467,713 + -2.0
467,713 + -2.4
467,802 + EX31_RS23495 0.14 -0.9
467,802 + EX31_RS23495 0.14 -0.4
467,802 + EX31_RS23495 0.14 -0.8
467,802 + EX31_RS23495 0.14 -0.4
467,806 + EX31_RS23495 0.15 -2.2
467,806 + EX31_RS23495 0.15 -0.4
467,827 + EX31_RS23495 0.16 -0.4
467,827 + EX31_RS23495 0.16 +0.4
467,842 + EX31_RS23495 0.17 -0.6
467,842 + EX31_RS23495 0.17 -2.0
467,951 + EX31_RS23495 0.26 -0.4
467,951 + EX31_RS23495 0.26 -0.0
467,951 + EX31_RS23495 0.26 -3.1
467,951 + EX31_RS23495 0.26 -0.0
467,977 + EX31_RS23495 0.28 -2.6
467,977 + EX31_RS23495 0.28 -2.0
468,122 + EX31_RS23495 0.39 -1.8
468,122 + EX31_RS23495 0.39 -1.4
468,122 + EX31_RS23495 0.39 -1.0
468,124 + EX31_RS23495 0.39 -1.9
468,124 + EX31_RS23495 0.39 -1.0
468,185 + EX31_RS23495 0.44 -1.8
468,185 + EX31_RS23495 0.44 +0.4
468,263 + EX31_RS23495 0.50 -0.7
468,263 + EX31_RS23495 0.50 -2.5
468,428 + EX31_RS23495 0.63 -0.8
468,428 + EX31_RS23495 0.63 -0.6

Or see this region's nucleotide sequence