Strain Fitness in Rahnella sp. WP5 around EX31_RS17520

Experiment: L-Glutamine (N); RCH2 media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS17515 and EX31_RS17520 are separated by 59 nucleotidesEX31_RS17520 and EX31_RS17525 are separated by 203 nucleotides EX31_RS17515: EX31_RS17515 - dihydrodipicolinate synthase family protein, at 55,113 to 56,033 _RS17515 EX31_RS17520: EX31_RS17520 - C26 family cysteine hydrolase domain-containing family, at 56,093 to 57,295 _RS17520 EX31_RS17525: EX31_RS17525 - pyridoxal phosphate-dependent aminotransferase, at 57,499 to 58,707 _RS17525 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 55.110 kb on + strandat 55.110 kb on + strandat 55.151 kb on + strandat 55.157 kb on + strandat 55.178 kb on + strandat 55.178 kb on + strandat 55.246 kb on - strand, within EX31_RS17515at 55.272 kb on + strand, within EX31_RS17515at 55.533 kb on + strand, within EX31_RS17515at 55.533 kb on + strand, within EX31_RS17515at 55.533 kb on + strand, within EX31_RS17515at 55.533 kb on + strand, within EX31_RS17515at 55.533 kb on + strand, within EX31_RS17515at 55.533 kb on + strand, within EX31_RS17515at 55.533 kb on + strand, within EX31_RS17515at 55.534 kb on - strand, within EX31_RS17515at 55.534 kb on - strand, within EX31_RS17515at 55.535 kb on + strand, within EX31_RS17515at 55.556 kb on + strand, within EX31_RS17515at 55.556 kb on + strand, within EX31_RS17515at 55.556 kb on + strand, within EX31_RS17515at 55.557 kb on - strand, within EX31_RS17515at 55.772 kb on + strand, within EX31_RS17515at 55.785 kb on + strand, within EX31_RS17515at 55.786 kb on - strand, within EX31_RS17515at 56.094 kb on + strandat 56.130 kb on - strandat 56.262 kb on - strand, within EX31_RS17520at 56.320 kb on - strand, within EX31_RS17520at 56.443 kb on + strand, within EX31_RS17520at 56.444 kb on - strand, within EX31_RS17520at 56.447 kb on - strand, within EX31_RS17520at 56.557 kb on + strand, within EX31_RS17520at 56.574 kb on + strand, within EX31_RS17520at 56.605 kb on + strand, within EX31_RS17520at 56.606 kb on - strand, within EX31_RS17520at 56.631 kb on - strand, within EX31_RS17520at 56.635 kb on + strand, within EX31_RS17520at 56.636 kb on - strand, within EX31_RS17520at 56.694 kb on + strand, within EX31_RS17520at 56.695 kb on - strand, within EX31_RS17520at 56.695 kb on - strand, within EX31_RS17520at 56.695 kb on - strand, within EX31_RS17520at 56.702 kb on - strand, within EX31_RS17520at 56.717 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.913 kb on + strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.939 kb on - strand, within EX31_RS17520at 56.949 kb on + strand, within EX31_RS17520at 57.042 kb on + strand, within EX31_RS17520at 57.042 kb on + strand, within EX31_RS17520at 57.043 kb on - strand, within EX31_RS17520at 57.043 kb on - strand, within EX31_RS17520at 57.250 kb on - strandat 57.284 kb on + strandat 57.285 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.382 kb on + strandat 57.595 kb on - strandat 57.637 kb on - strand, within EX31_RS17525at 57.648 kb on + strand, within EX31_RS17525at 57.648 kb on + strand, within EX31_RS17525at 57.648 kb on + strand, within EX31_RS17525at 57.649 kb on - strand, within EX31_RS17525at 57.649 kb on - strand, within EX31_RS17525at 57.649 kb on - strand, within EX31_RS17525at 57.677 kb on + strand, within EX31_RS17525at 57.694 kb on + strand, within EX31_RS17525at 57.742 kb on - strand, within EX31_RS17525at 57.742 kb on - strand, within EX31_RS17525at 57.748 kb on - strand, within EX31_RS17525at 57.759 kb on + strand, within EX31_RS17525at 57.760 kb on - strand, within EX31_RS17525at 57.760 kb on - strand, within EX31_RS17525at 57.886 kb on + strand, within EX31_RS17525at 58.045 kb on + strand, within EX31_RS17525at 58.046 kb on - strand, within EX31_RS17525at 58.046 kb on - strand, within EX31_RS17525at 58.123 kb on + strand, within EX31_RS17525at 58.123 kb on + strand, within EX31_RS17525at 58.123 kb on + strand, within EX31_RS17525at 58.123 kb on + strand, within EX31_RS17525at 58.205 kb on + strand, within EX31_RS17525at 58.205 kb on + strand, within EX31_RS17525at 58.219 kb on - strand, within EX31_RS17525at 58.226 kb on - strand, within EX31_RS17525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
remove
55,110 + -0.3
55,110 + -0.1
55,151 + +1.2
55,157 + +1.4
55,178 + +0.8
55,178 + +0.9
55,246 - EX31_RS17515 0.14 -1.6
55,272 + EX31_RS17515 0.17 -1.2
55,533 + EX31_RS17515 0.46 +0.8
55,533 + EX31_RS17515 0.46 +1.1
55,533 + EX31_RS17515 0.46 -1.2
55,533 + EX31_RS17515 0.46 +0.9
55,533 + EX31_RS17515 0.46 +0.1
55,533 + EX31_RS17515 0.46 -0.1
55,533 + EX31_RS17515 0.46 -0.1
55,534 - EX31_RS17515 0.46 +0.7
55,534 - EX31_RS17515 0.46 +2.7
55,535 + EX31_RS17515 0.46 +0.4
55,556 + EX31_RS17515 0.48 +0.5
55,556 + EX31_RS17515 0.48 +0.1
55,556 + EX31_RS17515 0.48 +0.4
55,557 - EX31_RS17515 0.48 -1.2
55,772 + EX31_RS17515 0.72 +0.6
55,785 + EX31_RS17515 0.73 -1.4
55,786 - EX31_RS17515 0.73 +0.4
56,094 + -0.2
56,130 - -0.5
56,262 - EX31_RS17520 0.14 +1.4
56,320 - EX31_RS17520 0.19 -0.2
56,443 + EX31_RS17520 0.29 -1.2
56,444 - EX31_RS17520 0.29 -0.2
56,447 - EX31_RS17520 0.29 -1.1
56,557 + EX31_RS17520 0.39 +0.7
56,574 + EX31_RS17520 0.40 -0.3
56,605 + EX31_RS17520 0.43 -0.1
56,606 - EX31_RS17520 0.43 -0.4
56,631 - EX31_RS17520 0.45 +1.2
56,635 + EX31_RS17520 0.45 -0.2
56,636 - EX31_RS17520 0.45 +1.9
56,694 + EX31_RS17520 0.50 -1.5
56,695 - EX31_RS17520 0.50 +0.6
56,695 - EX31_RS17520 0.50 -0.1
56,695 - EX31_RS17520 0.50 -0.4
56,702 - EX31_RS17520 0.51 -0.5
56,717 + EX31_RS17520 0.52 -0.1
56,911 + EX31_RS17520 0.68 +1.3
56,911 + EX31_RS17520 0.68 +0.1
56,911 + EX31_RS17520 0.68 +1.9
56,911 + EX31_RS17520 0.68 -1.2
56,911 + EX31_RS17520 0.68 +0.1
56,911 + EX31_RS17520 0.68 -0.9
56,911 + EX31_RS17520 0.68 +0.2
56,911 + EX31_RS17520 0.68 +0.9
56,911 + EX31_RS17520 0.68 -0.6
56,912 - EX31_RS17520 0.68 +0.5
56,912 - EX31_RS17520 0.68 +1.0
56,912 - EX31_RS17520 0.68 +0.4
56,912 - EX31_RS17520 0.68 +0.6
56,912 - EX31_RS17520 0.68 +0.0
56,912 - EX31_RS17520 0.68 +0.9
56,912 - EX31_RS17520 0.68 +0.2
56,912 - EX31_RS17520 0.68 -0.3
56,912 - EX31_RS17520 0.68 +1.5
56,912 - EX31_RS17520 0.68 +1.4
56,912 - EX31_RS17520 0.68 +0.6
56,912 - EX31_RS17520 0.68 +0.4
56,912 - EX31_RS17520 0.68 -0.4
56,913 + EX31_RS17520 0.68 +0.9
56,914 - EX31_RS17520 0.68 +0.9
56,914 - EX31_RS17520 0.68 +0.4
56,914 - EX31_RS17520 0.68 +0.1
56,914 - EX31_RS17520 0.68 -0.8
56,914 - EX31_RS17520 0.68 -0.6
56,939 - EX31_RS17520 0.70 +0.1
56,949 + EX31_RS17520 0.71 -0.5
57,042 + EX31_RS17520 0.79 -2.1
57,042 + EX31_RS17520 0.79 +1.1
57,043 - EX31_RS17520 0.79 -0.6
57,043 - EX31_RS17520 0.79 +0.1
57,250 - -0.4
57,284 + +1.7
57,285 - -0.9
57,287 - +0.0
57,287 - +0.6
57,382 + +0.5
57,595 - +1.7
57,637 - EX31_RS17525 0.11 +0.5
57,648 + EX31_RS17525 0.12 +0.9
57,648 + EX31_RS17525 0.12 +0.1
57,648 + EX31_RS17525 0.12 +0.5
57,649 - EX31_RS17525 0.12 -0.2
57,649 - EX31_RS17525 0.12 -0.2
57,649 - EX31_RS17525 0.12 +0.4
57,677 + EX31_RS17525 0.15 -0.2
57,694 + EX31_RS17525 0.16 +0.1
57,742 - EX31_RS17525 0.20 +0.6
57,742 - EX31_RS17525 0.20 -1.1
57,748 - EX31_RS17525 0.21 -0.1
57,759 + EX31_RS17525 0.22 +0.1
57,760 - EX31_RS17525 0.22 -0.6
57,760 - EX31_RS17525 0.22 +0.7
57,886 + EX31_RS17525 0.32 -0.2
58,045 + EX31_RS17525 0.45 +0.4
58,046 - EX31_RS17525 0.45 +0.5
58,046 - EX31_RS17525 0.45 -0.1
58,123 + EX31_RS17525 0.52 +2.2
58,123 + EX31_RS17525 0.52 -0.2
58,123 + EX31_RS17525 0.52 +0.7
58,123 + EX31_RS17525 0.52 -0.6
58,205 + EX31_RS17525 0.58 -0.9
58,205 + EX31_RS17525 0.58 -2.0
58,219 - EX31_RS17525 0.60 -1.4
58,226 - EX31_RS17525 0.60 -0.4

Or see this region's nucleotide sequence