Strain Fitness in Rahnella sp. WP5 around EX31_RS12555

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12550 and EX31_RS12555 are separated by 459 nucleotidesEX31_RS12555 and EX31_RS12560 are separated by 3 nucleotidesEX31_RS12560 and EX31_RS12565 are separated by 55 nucleotides EX31_RS12550: EX31_RS12550 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 181,406 to 182,275 _RS12550 EX31_RS12555: EX31_RS12555 - M23 family metallopeptidase, at 182,735 to 183,544 _RS12555 EX31_RS12560: EX31_RS12560 - prepilin peptidase, at 183,548 to 184,378 _RS12560 EX31_RS12565: EX31_RS12565 - hypothetical protein, at 184,434 to 185,780 _RS12565 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 181.827 kb on - strand, within EX31_RS12550at 181.867 kb on + strand, within EX31_RS12550at 181.867 kb on + strand, within EX31_RS12550at 181.867 kb on + strand, within EX31_RS12550at 181.867 kb on + strand, within EX31_RS12550at 181.867 kb on + strand, within EX31_RS12550at 181.867 kb on + strand, within EX31_RS12550at 181.868 kb on - strand, within EX31_RS12550at 181.868 kb on - strand, within EX31_RS12550at 181.948 kb on + strand, within EX31_RS12550at 181.948 kb on + strand, within EX31_RS12550at 181.976 kb on + strand, within EX31_RS12550at 181.976 kb on + strand, within EX31_RS12550at 181.976 kb on + strand, within EX31_RS12550at 181.977 kb on - strand, within EX31_RS12550at 181.977 kb on - strand, within EX31_RS12550at 181.983 kb on + strand, within EX31_RS12550at 181.983 kb on + strand, within EX31_RS12550at 181.983 kb on + strand, within EX31_RS12550at 181.983 kb on + strand, within EX31_RS12550at 182.017 kb on + strand, within EX31_RS12550at 182.110 kb on + strand, within EX31_RS12550at 182.237 kb on + strandat 182.237 kb on + strandat 182.237 kb on + strandat 182.238 kb on - strandat 182.239 kb on + strandat 182.239 kb on + strandat 182.240 kb on - strandat 182.240 kb on - strandat 182.680 kb on + strandat 182.680 kb on + strandat 182.680 kb on + strandat 182.683 kb on - strandat 182.684 kb on + strandat 182.684 kb on + strandat 182.684 kb on + strandat 182.684 kb on + strandat 182.685 kb on - strandat 182.702 kb on + strandat 182.703 kb on - strandat 182.703 kb on - strandat 182.750 kb on + strandat 182.757 kb on + strandat 182.782 kb on + strandat 182.782 kb on + strandat 182.782 kb on + strandat 182.782 kb on + strandat 182.782 kb on + strandat 182.782 kb on + strandat 182.783 kb on - strandat 182.783 kb on - strandat 182.783 kb on - strandat 182.783 kb on - strandat 182.783 kb on - strandat 182.784 kb on + strandat 182.784 kb on + strandat 182.785 kb on - strandat 182.785 kb on - strandat 182.785 kb on - strandat 182.817 kb on + strand, within EX31_RS12555at 182.823 kb on - strand, within EX31_RS12555at 182.823 kb on - strand, within EX31_RS12555at 182.836 kb on - strand, within EX31_RS12555at 182.836 kb on - strand, within EX31_RS12555at 182.932 kb on - strand, within EX31_RS12555at 182.932 kb on - strand, within EX31_RS12555at 182.932 kb on - strand, within EX31_RS12555at 183.106 kb on - strand, within EX31_RS12555at 183.134 kb on + strand, within EX31_RS12555at 183.135 kb on - strand, within EX31_RS12555at 183.135 kb on - strand, within EX31_RS12555at 183.135 kb on - strand, within EX31_RS12555at 183.137 kb on + strand, within EX31_RS12555at 183.137 kb on + strand, within EX31_RS12555at 183.137 kb on + strand, within EX31_RS12555at 183.138 kb on - strand, within EX31_RS12555at 183.138 kb on - strand, within EX31_RS12555at 183.138 kb on - strand, within EX31_RS12555at 183.138 kb on - strand, within EX31_RS12555at 183.144 kb on + strand, within EX31_RS12555at 183.144 kb on + strand, within EX31_RS12555at 183.144 kb on + strand, within EX31_RS12555at 183.144 kb on + strand, within EX31_RS12555at 183.145 kb on - strand, within EX31_RS12555at 183.145 kb on - strand, within EX31_RS12555at 183.145 kb on - strand, within EX31_RS12555at 183.145 kb on - strand, within EX31_RS12555at 183.145 kb on - strand, within EX31_RS12555at 183.145 kb on - strand, within EX31_RS12555at 183.145 kb on - strand, within EX31_RS12555at 183.165 kb on + strand, within EX31_RS12555at 183.165 kb on + strand, within EX31_RS12555at 183.166 kb on - strand, within EX31_RS12555at 183.166 kb on - strand, within EX31_RS12555at 183.166 kb on - strand, within EX31_RS12555at 183.166 kb on - strand, within EX31_RS12555at 183.167 kb on - strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.169 kb on + strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.170 kb on - strand, within EX31_RS12555at 183.211 kb on + strand, within EX31_RS12555at 183.212 kb on - strand, within EX31_RS12555at 183.280 kb on + strand, within EX31_RS12555at 183.325 kb on + strand, within EX31_RS12555at 183.325 kb on + strand, within EX31_RS12555at 183.325 kb on + strand, within EX31_RS12555at 183.325 kb on + strand, within EX31_RS12555at 183.326 kb on - strand, within EX31_RS12555at 183.326 kb on - strand, within EX31_RS12555at 183.401 kb on - strand, within EX31_RS12555at 183.404 kb on + strand, within EX31_RS12555at 183.404 kb on + strand, within EX31_RS12555at 183.404 kb on + strand, within EX31_RS12555at 183.404 kb on + strand, within EX31_RS12555at 183.404 kb on + strand, within EX31_RS12555at 183.405 kb on - strand, within EX31_RS12555at 183.405 kb on - strand, within EX31_RS12555at 183.405 kb on - strand, within EX31_RS12555at 183.430 kb on + strand, within EX31_RS12555at 183.612 kb on + strandat 183.612 kb on + strandat 183.612 kb on + strandat 183.612 kb on + strandat 183.612 kb on + strandat 183.612 kb on + strandat 183.612 kb on + strandat 183.613 kb on - strandat 183.613 kb on - strandat 183.613 kb on - strandat 183.613 kb on - strandat 183.613 kb on - strandat 183.613 kb on - strandat 183.670 kb on + strand, within EX31_RS12560at 183.670 kb on + strand, within EX31_RS12560at 183.670 kb on + strand, within EX31_RS12560at 183.671 kb on - strand, within EX31_RS12560at 183.671 kb on - strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.681 kb on + strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.682 kb on - strand, within EX31_RS12560at 183.689 kb on - strand, within EX31_RS12560at 183.689 kb on - strand, within EX31_RS12560at 183.764 kb on + strand, within EX31_RS12560at 183.764 kb on + strand, within EX31_RS12560at 183.765 kb on - strand, within EX31_RS12560at 183.765 kb on - strand, within EX31_RS12560at 183.765 kb on - strand, within EX31_RS12560at 183.832 kb on - strand, within EX31_RS12560at 183.832 kb on - strand, within EX31_RS12560at 183.832 kb on - strand, within EX31_RS12560at 183.848 kb on - strand, within EX31_RS12560at 183.899 kb on + strand, within EX31_RS12560at 183.911 kb on + strand, within EX31_RS12560at 183.924 kb on - strand, within EX31_RS12560at 183.964 kb on + strand, within EX31_RS12560at 183.974 kb on + strand, within EX31_RS12560at 184.086 kb on - strand, within EX31_RS12560at 184.086 kb on - strand, within EX31_RS12560at 184.101 kb on + strand, within EX31_RS12560at 184.101 kb on + strand, within EX31_RS12560at 184.101 kb on + strand, within EX31_RS12560at 184.102 kb on - strand, within EX31_RS12560at 184.102 kb on - strand, within EX31_RS12560at 184.102 kb on - strand, within EX31_RS12560at 184.145 kb on - strand, within EX31_RS12560at 184.145 kb on - strand, within EX31_RS12560at 184.171 kb on + strand, within EX31_RS12560at 184.171 kb on + strand, within EX31_RS12560at 184.187 kb on + strand, within EX31_RS12560at 184.264 kb on - strand, within EX31_RS12560at 184.307 kb on - strandat 184.309 kb on - strandat 184.335 kb on - strandat 184.436 kb on - strandat 184.479 kb on + strandat 184.481 kb on + strandat 184.524 kb on + strandat 184.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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181,827 - EX31_RS12550 0.48 -0.3
181,867 + EX31_RS12550 0.53 -0.1
181,867 + EX31_RS12550 0.53 +0.5
181,867 + EX31_RS12550 0.53 +0.3
181,867 + EX31_RS12550 0.53 -0.0
181,867 + EX31_RS12550 0.53 +0.5
181,867 + EX31_RS12550 0.53 +0.5
181,868 - EX31_RS12550 0.53 +1.4
181,868 - EX31_RS12550 0.53 -0.3
181,948 + EX31_RS12550 0.62 +0.5
181,948 + EX31_RS12550 0.62 -2.9
181,976 + EX31_RS12550 0.66 +0.2
181,976 + EX31_RS12550 0.66 +1.9
181,976 + EX31_RS12550 0.66 +0.7
181,977 - EX31_RS12550 0.66 -0.6
181,977 - EX31_RS12550 0.66 +0.2
181,983 + EX31_RS12550 0.66 +0.3
181,983 + EX31_RS12550 0.66 +0.4
181,983 + EX31_RS12550 0.66 -0.0
181,983 + EX31_RS12550 0.66 +0.7
182,017 + EX31_RS12550 0.70 +2.5
182,110 + EX31_RS12550 0.81 -1.3
182,237 + -0.5
182,237 + -0.2
182,237 + -0.0
182,238 - +1.1
182,239 + -0.5
182,239 + +0.7
182,240 - -0.8
182,240 - -0.8
182,680 + +0.4
182,680 + +0.1
182,680 + -0.8
182,683 - -0.0
182,684 + -0.3
182,684 + +0.7
182,684 + -0.3
182,684 + +2.0
182,685 - +3.5
182,702 + -0.0
182,703 - -0.3
182,703 - -0.7
182,750 + -1.3
182,757 + +0.4
182,782 + -0.1
182,782 + -0.1
182,782 + +0.5
182,782 + -1.0
182,782 + -0.8
182,782 + -0.7
182,783 - +0.3
182,783 - -1.7
182,783 - +1.0
182,783 - +0.0
182,783 - -0.8
182,784 + -0.6
182,784 + -0.1
182,785 - -0.2
182,785 - +0.5
182,785 - +1.1
182,817 + EX31_RS12555 0.10 -0.9
182,823 - EX31_RS12555 0.11 +2.2
182,823 - EX31_RS12555 0.11 -1.3
182,836 - EX31_RS12555 0.12 +1.1
182,836 - EX31_RS12555 0.12 -0.1
182,932 - EX31_RS12555 0.24 +1.2
182,932 - EX31_RS12555 0.24 +1.1
182,932 - EX31_RS12555 0.24 +0.8
183,106 - EX31_RS12555 0.46 -0.9
183,134 + EX31_RS12555 0.49 +0.2
183,135 - EX31_RS12555 0.49 -0.5
183,135 - EX31_RS12555 0.49 -0.0
183,135 - EX31_RS12555 0.49 +0.2
183,137 + EX31_RS12555 0.50 +0.8
183,137 + EX31_RS12555 0.50 +1.9
183,137 + EX31_RS12555 0.50 +0.7
183,138 - EX31_RS12555 0.50 +1.4
183,138 - EX31_RS12555 0.50 +0.5
183,138 - EX31_RS12555 0.50 +1.1
183,138 - EX31_RS12555 0.50 -0.1
183,144 + EX31_RS12555 0.50 -0.0
183,144 + EX31_RS12555 0.50 +0.3
183,144 + EX31_RS12555 0.50 +0.6
183,144 + EX31_RS12555 0.50 +0.5
183,145 - EX31_RS12555 0.51 -0.7
183,145 - EX31_RS12555 0.51 -0.0
183,145 - EX31_RS12555 0.51 +0.4
183,145 - EX31_RS12555 0.51 +0.0
183,145 - EX31_RS12555 0.51 +0.3
183,145 - EX31_RS12555 0.51 +0.0
183,145 - EX31_RS12555 0.51 -0.2
183,165 + EX31_RS12555 0.53 -0.1
183,165 + EX31_RS12555 0.53 +0.8
183,166 - EX31_RS12555 0.53 -0.9
183,166 - EX31_RS12555 0.53 +1.5
183,166 - EX31_RS12555 0.53 +0.6
183,166 - EX31_RS12555 0.53 -0.2
183,167 - EX31_RS12555 0.53 -0.7
183,169 + EX31_RS12555 0.54 +2.0
183,169 + EX31_RS12555 0.54 -1.9
183,169 + EX31_RS12555 0.54 +0.6
183,169 + EX31_RS12555 0.54 -0.1
183,169 + EX31_RS12555 0.54 +0.4
183,169 + EX31_RS12555 0.54 +0.4
183,169 + EX31_RS12555 0.54 -0.3
183,169 + EX31_RS12555 0.54 -0.6
183,169 + EX31_RS12555 0.54 +0.1
183,169 + EX31_RS12555 0.54 -0.4
183,169 + EX31_RS12555 0.54 +0.6
183,169 + EX31_RS12555 0.54 -1.5
183,169 + EX31_RS12555 0.54 -1.7
183,169 + EX31_RS12555 0.54 -2.2
183,169 + EX31_RS12555 0.54 +0.9
183,169 + EX31_RS12555 0.54 +0.4
183,169 + EX31_RS12555 0.54 +0.4
183,169 + EX31_RS12555 0.54 +0.8
183,169 + EX31_RS12555 0.54 +0.1
183,170 - EX31_RS12555 0.54 +1.0
183,170 - EX31_RS12555 0.54 +0.2
183,170 - EX31_RS12555 0.54 -0.3
183,170 - EX31_RS12555 0.54 +1.5
183,170 - EX31_RS12555 0.54 +0.7
183,170 - EX31_RS12555 0.54 -0.7
183,170 - EX31_RS12555 0.54 +0.5
183,170 - EX31_RS12555 0.54 +0.7
183,170 - EX31_RS12555 0.54 -0.8
183,170 - EX31_RS12555 0.54 +0.3
183,170 - EX31_RS12555 0.54 +0.4
183,170 - EX31_RS12555 0.54 -1.9
183,170 - EX31_RS12555 0.54 +0.2
183,170 - EX31_RS12555 0.54 +1.3
183,170 - EX31_RS12555 0.54 +0.5
183,211 + EX31_RS12555 0.59 -1.9
183,212 - EX31_RS12555 0.59 +1.5
183,280 + EX31_RS12555 0.67 -0.4
183,325 + EX31_RS12555 0.73 +1.4
183,325 + EX31_RS12555 0.73 +0.4
183,325 + EX31_RS12555 0.73 -0.4
183,325 + EX31_RS12555 0.73 +0.4
183,326 - EX31_RS12555 0.73 -0.1
183,326 - EX31_RS12555 0.73 -1.4
183,401 - EX31_RS12555 0.82 -1.2
183,404 + EX31_RS12555 0.83 -0.2
183,404 + EX31_RS12555 0.83 -1.4
183,404 + EX31_RS12555 0.83 +0.0
183,404 + EX31_RS12555 0.83 -0.9
183,404 + EX31_RS12555 0.83 +2.1
183,405 - EX31_RS12555 0.83 -0.3
183,405 - EX31_RS12555 0.83 +0.2
183,405 - EX31_RS12555 0.83 +0.8
183,430 + EX31_RS12555 0.86 +1.1
183,612 + -1.7
183,612 + +0.2
183,612 + +1.2
183,612 + -0.8
183,612 + -0.1
183,612 + +1.0
183,612 + +0.9
183,613 - -0.0
183,613 - -0.0
183,613 - -1.4
183,613 - -0.3
183,613 - -1.1
183,613 - -1.7
183,670 + EX31_RS12560 0.15 +0.7
183,670 + EX31_RS12560 0.15 -0.2
183,670 + EX31_RS12560 0.15 +0.2
183,671 - EX31_RS12560 0.15 -1.0
183,671 - EX31_RS12560 0.15 +0.7
183,681 + EX31_RS12560 0.16 +0.9
183,681 + EX31_RS12560 0.16 +1.2
183,681 + EX31_RS12560 0.16 +1.3
183,681 + EX31_RS12560 0.16 -0.2
183,681 + EX31_RS12560 0.16 -0.3
183,681 + EX31_RS12560 0.16 +0.6
183,681 + EX31_RS12560 0.16 -0.4
183,681 + EX31_RS12560 0.16 +0.6
183,681 + EX31_RS12560 0.16 -0.3
183,681 + EX31_RS12560 0.16 +1.1
183,681 + EX31_RS12560 0.16 -1.2
183,681 + EX31_RS12560 0.16 -1.1
183,681 + EX31_RS12560 0.16 +0.9
183,681 + EX31_RS12560 0.16 -0.2
183,681 + EX31_RS12560 0.16 +0.1
183,681 + EX31_RS12560 0.16 -0.1
183,681 + EX31_RS12560 0.16 +0.3
183,681 + EX31_RS12560 0.16 +0.0
183,682 - EX31_RS12560 0.16 +0.2
183,682 - EX31_RS12560 0.16 +1.4
183,682 - EX31_RS12560 0.16 +1.5
183,682 - EX31_RS12560 0.16 +0.1
183,682 - EX31_RS12560 0.16 +0.6
183,682 - EX31_RS12560 0.16 +0.8
183,682 - EX31_RS12560 0.16 +0.4
183,682 - EX31_RS12560 0.16 -0.8
183,682 - EX31_RS12560 0.16 +0.3
183,682 - EX31_RS12560 0.16 +0.6
183,682 - EX31_RS12560 0.16 -0.4
183,682 - EX31_RS12560 0.16 -0.4
183,682 - EX31_RS12560 0.16 +1.4
183,682 - EX31_RS12560 0.16 +1.1
183,682 - EX31_RS12560 0.16 +0.2
183,682 - EX31_RS12560 0.16 +1.8
183,689 - EX31_RS12560 0.17 -1.3
183,689 - EX31_RS12560 0.17 +1.1
183,764 + EX31_RS12560 0.26 -0.5
183,764 + EX31_RS12560 0.26 +1.1
183,765 - EX31_RS12560 0.26 +0.2
183,765 - EX31_RS12560 0.26 +0.1
183,765 - EX31_RS12560 0.26 -1.6
183,832 - EX31_RS12560 0.34 -1.0
183,832 - EX31_RS12560 0.34 -0.2
183,832 - EX31_RS12560 0.34 +0.2
183,848 - EX31_RS12560 0.36 +0.3
183,899 + EX31_RS12560 0.42 +0.0
183,911 + EX31_RS12560 0.44 +1.2
183,924 - EX31_RS12560 0.45 +0.8
183,964 + EX31_RS12560 0.50 -0.5
183,974 + EX31_RS12560 0.51 -0.7
184,086 - EX31_RS12560 0.65 +0.4
184,086 - EX31_RS12560 0.65 +1.5
184,101 + EX31_RS12560 0.67 -0.4
184,101 + EX31_RS12560 0.67 +1.1
184,101 + EX31_RS12560 0.67 -0.8
184,102 - EX31_RS12560 0.67 +1.2
184,102 - EX31_RS12560 0.67 -1.5
184,102 - EX31_RS12560 0.67 -0.3
184,145 - EX31_RS12560 0.72 -0.6
184,145 - EX31_RS12560 0.72 +0.3
184,171 + EX31_RS12560 0.75 -0.1
184,171 + EX31_RS12560 0.75 -0.4
184,187 + EX31_RS12560 0.77 +1.5
184,264 - EX31_RS12560 0.86 -0.6
184,307 - +0.9
184,309 - -0.8
184,335 - +2.1
184,436 - +0.3
184,479 + -1.5
184,481 + -1.3
184,524 + +1.0
184,525 - -0.6

Or see this region's nucleotide sequence