Strain Fitness in Rahnella sp. WP5 around EX31_RS07260

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07255 and EX31_RS07260 are separated by 209 nucleotidesEX31_RS07260 and EX31_RS07265 are separated by 418 nucleotidesEX31_RS07265 and EX31_RS07270 are separated by 40 nucleotides EX31_RS07255: EX31_RS07255 - serine hydrolase, at 250,769 to 252,322 _RS07255 EX31_RS07260: EX31_RS07260 - formate-dependent uric acid utilization protein AegA, at 252,532 to 254,511 _RS07260 EX31_RS07265: EX31_RS07265 - heme-binding protein, at 254,930 to 255,406 _RS07265 EX31_RS07270: EX31_RS07270 - gluconate 5-dehydrogenase, at 255,447 to 256,013 _RS07270 Position (kb) 252 253 254 255Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 251.649 kb on - strand, within EX31_RS07255at 251.678 kb on - strand, within EX31_RS07255at 251.678 kb on - strand, within EX31_RS07255at 251.685 kb on - strand, within EX31_RS07255at 251.787 kb on + strand, within EX31_RS07255at 251.787 kb on + strand, within EX31_RS07255at 251.832 kb on + strand, within EX31_RS07255at 251.832 kb on + strand, within EX31_RS07255at 251.832 kb on + strand, within EX31_RS07255at 251.833 kb on - strand, within EX31_RS07255at 251.833 kb on - strand, within EX31_RS07255at 251.913 kb on - strand, within EX31_RS07255at 252.159 kb on + strand, within EX31_RS07255at 252.159 kb on + strand, within EX31_RS07255at 252.243 kb on - strandat 252.433 kb on + strandat 252.442 kb on + strandat 252.442 kb on + strandat 252.476 kb on - strandat 252.478 kb on + strandat 252.479 kb on - strandat 252.512 kb on - strandat 252.544 kb on - strandat 252.544 kb on - strandat 252.790 kb on - strand, within EX31_RS07260at 252.798 kb on + strand, within EX31_RS07260at 252.799 kb on - strand, within EX31_RS07260at 252.843 kb on - strand, within EX31_RS07260at 252.843 kb on - strand, within EX31_RS07260at 252.898 kb on - strand, within EX31_RS07260at 252.898 kb on - strand, within EX31_RS07260at 253.147 kb on - strand, within EX31_RS07260at 253.156 kb on + strand, within EX31_RS07260at 253.157 kb on - strand, within EX31_RS07260at 253.157 kb on - strand, within EX31_RS07260at 253.157 kb on - strand, within EX31_RS07260at 253.157 kb on - strand, within EX31_RS07260at 253.168 kb on - strand, within EX31_RS07260at 253.168 kb on - strand, within EX31_RS07260at 253.168 kb on - strand, within EX31_RS07260at 253.398 kb on + strand, within EX31_RS07260at 253.425 kb on + strand, within EX31_RS07260at 253.435 kb on + strand, within EX31_RS07260at 253.435 kb on + strand, within EX31_RS07260at 253.436 kb on - strand, within EX31_RS07260at 253.436 kb on - strand, within EX31_RS07260at 253.437 kb on + strand, within EX31_RS07260at 253.437 kb on + strand, within EX31_RS07260at 253.438 kb on - strand, within EX31_RS07260at 253.438 kb on - strand, within EX31_RS07260at 253.488 kb on + strand, within EX31_RS07260at 253.498 kb on - strand, within EX31_RS07260at 253.498 kb on - strand, within EX31_RS07260at 253.627 kb on - strand, within EX31_RS07260at 253.766 kb on + strand, within EX31_RS07260at 253.772 kb on + strand, within EX31_RS07260at 253.773 kb on - strand, within EX31_RS07260at 253.773 kb on - strand, within EX31_RS07260at 253.786 kb on + strand, within EX31_RS07260at 253.786 kb on + strand, within EX31_RS07260at 253.786 kb on + strand, within EX31_RS07260at 253.787 kb on - strand, within EX31_RS07260at 253.906 kb on + strand, within EX31_RS07260at 253.907 kb on - strand, within EX31_RS07260at 253.953 kb on + strand, within EX31_RS07260at 254.089 kb on - strand, within EX31_RS07260at 254.089 kb on - strand, within EX31_RS07260at 254.153 kb on + strand, within EX31_RS07260at 254.154 kb on - strand, within EX31_RS07260at 254.277 kb on + strand, within EX31_RS07260at 254.277 kb on + strand, within EX31_RS07260at 254.277 kb on + strand, within EX31_RS07260at 254.278 kb on - strand, within EX31_RS07260at 254.327 kb on + strandat 254.327 kb on + strandat 254.357 kb on - strandat 254.378 kb on + strandat 254.460 kb on + strandat 254.460 kb on + strandat 254.589 kb on + strandat 254.590 kb on - strandat 254.750 kb on - strandat 255.412 kb on + strandat 255.412 kb on + strandat 255.413 kb on - strandat 255.422 kb on + strandat 255.422 kb on + strandat 255.423 kb on - strandat 255.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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251,649 - EX31_RS07255 0.57 +1.2
251,678 - EX31_RS07255 0.58 -0.8
251,678 - EX31_RS07255 0.58 -0.6
251,685 - EX31_RS07255 0.59 -0.4
251,787 + EX31_RS07255 0.66 -0.1
251,787 + EX31_RS07255 0.66 -0.2
251,832 + EX31_RS07255 0.68 -0.7
251,832 + EX31_RS07255 0.68 -0.4
251,832 + EX31_RS07255 0.68 +1.1
251,833 - EX31_RS07255 0.68 +0.6
251,833 - EX31_RS07255 0.68 +0.3
251,913 - EX31_RS07255 0.74 +4.1
252,159 + EX31_RS07255 0.89 +0.0
252,159 + EX31_RS07255 0.89 -0.2
252,243 - -1.0
252,433 + -0.0
252,442 + +0.2
252,442 + +1.0
252,476 - -0.8
252,478 + +1.2
252,479 - -0.7
252,512 - -0.8
252,544 - +0.4
252,544 - +0.2
252,790 - EX31_RS07260 0.13 +2.8
252,798 + EX31_RS07260 0.13 +1.8
252,799 - EX31_RS07260 0.13 +0.2
252,843 - EX31_RS07260 0.16 -0.6
252,843 - EX31_RS07260 0.16 +1.2
252,898 - EX31_RS07260 0.18 +1.1
252,898 - EX31_RS07260 0.18 +0.8
253,147 - EX31_RS07260 0.31 +0.8
253,156 + EX31_RS07260 0.32 +1.5
253,157 - EX31_RS07260 0.32 -0.8
253,157 - EX31_RS07260 0.32 -0.2
253,157 - EX31_RS07260 0.32 +0.2
253,157 - EX31_RS07260 0.32 -0.1
253,168 - EX31_RS07260 0.32 +0.2
253,168 - EX31_RS07260 0.32 -1.4
253,168 - EX31_RS07260 0.32 +0.8
253,398 + EX31_RS07260 0.44 +1.0
253,425 + EX31_RS07260 0.45 -0.6
253,435 + EX31_RS07260 0.46 -0.4
253,435 + EX31_RS07260 0.46 +1.3
253,436 - EX31_RS07260 0.46 -0.5
253,436 - EX31_RS07260 0.46 +0.4
253,437 + EX31_RS07260 0.46 +1.0
253,437 + EX31_RS07260 0.46 +3.3
253,438 - EX31_RS07260 0.46 +1.0
253,438 - EX31_RS07260 0.46 +2.8
253,488 + EX31_RS07260 0.48 -0.2
253,498 - EX31_RS07260 0.49 -0.6
253,498 - EX31_RS07260 0.49 -1.1
253,627 - EX31_RS07260 0.55 +0.2
253,766 + EX31_RS07260 0.62 -0.8
253,772 + EX31_RS07260 0.63 +0.5
253,773 - EX31_RS07260 0.63 +0.0
253,773 - EX31_RS07260 0.63 +0.5
253,786 + EX31_RS07260 0.63 +1.0
253,786 + EX31_RS07260 0.63 -0.5
253,786 + EX31_RS07260 0.63 -0.9
253,787 - EX31_RS07260 0.63 +0.7
253,906 + EX31_RS07260 0.69 +0.8
253,907 - EX31_RS07260 0.69 -2.0
253,953 + EX31_RS07260 0.72 -0.2
254,089 - EX31_RS07260 0.79 +2.2
254,089 - EX31_RS07260 0.79 -0.7
254,153 + EX31_RS07260 0.82 +0.9
254,154 - EX31_RS07260 0.82 +0.9
254,277 + EX31_RS07260 0.88 +0.5
254,277 + EX31_RS07260 0.88 -0.2
254,277 + EX31_RS07260 0.88 +2.0
254,278 - EX31_RS07260 0.88 +1.2
254,327 + -0.4
254,327 + -0.6
254,357 - -0.0
254,378 + +0.2
254,460 + +0.9
254,460 + +0.9
254,589 + +0.9
254,590 - +0.6
254,750 - +0.3
255,412 + +2.1
255,412 + -0.2
255,413 - -0.6
255,422 + +1.3
255,422 + -0.3
255,423 - +2.3
255,423 - -1.3

Or see this region's nucleotide sequence