Strain Fitness in Rahnella sp. WP5 around EX31_RS04915

Experiment: L-Glutamine (N); RCH2 media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (N); RCH2 media; shaking
107,902	-		EX31_RS04905	0.90	-0.2
107,956	-				+0.8
107,961	+				-0.2
107,962	-				+0.1
107,962	-				-0.7
107,962	-				+0.3
107,971	+				-0.0
107,980	-				+0.3
108,009	+				+0.0
108,189	+				+0.3
108,190	-				+0.0
108,210	-				+0.8
108,222	-				-0.4
108,222	-				-0.2
108,265	+				-0.1
108,266	-				-0.8
108,266	-				+0.4
108,382	-				+0.1
108,441	+		EX31_RS04910	0.23	+0.1
108,441	+		EX31_RS04910	0.23	+0.2
108,441	+		EX31_RS04910	0.23	+0.2
108,441	+		EX31_RS04910	0.23	-1.1
108,441	+		EX31_RS04910	0.23	+1.1
108,441	+		EX31_RS04910	0.23	-0.3
108,441	+		EX31_RS04910	0.23	+1.0
108,441	+		EX31_RS04910	0.23	+1.2
108,441	+		EX31_RS04910	0.23	+2.2
108,441	+		EX31_RS04910	0.23	-0.3
108,441	+		EX31_RS04910	0.23	+0.0
108,441	+		EX31_RS04910	0.23	+0.3
108,441	+		EX31_RS04910	0.23	-0.6
108,441	+		EX31_RS04910	0.23	+0.4
108,441	+		EX31_RS04910	0.23	-0.9
108,441	+		EX31_RS04910	0.23	-0.5
108,442	-		EX31_RS04910	0.23	+0.4
108,442	-		EX31_RS04910	0.23	-0.9
108,442	-		EX31_RS04910	0.23	+0.2
108,442	-		EX31_RS04910	0.23	-0.8
108,442	-		EX31_RS04910	0.23	+1.1
108,442	-		EX31_RS04910	0.23	+0.2
108,442	-		EX31_RS04910	0.23	+0.1
108,442	-		EX31_RS04910	0.23	-0.3
108,442	-		EX31_RS04910	0.23	+0.1
108,442	-		EX31_RS04910	0.23	-0.1
108,444	+		EX31_RS04910	0.24	-0.4
108,444	+		EX31_RS04910	0.24	-1.2
108,444	+		EX31_RS04910	0.24	-0.1
108,444	+		EX31_RS04910	0.24	-0.9
108,444	+		EX31_RS04910	0.24	+0.6
108,444	+		EX31_RS04910	0.24	+1.9
108,444	+		EX31_RS04910	0.24	-2.2
108,444	+		EX31_RS04910	0.24	-1.1
108,444	+		EX31_RS04910	0.24	-0.4
108,444	+		EX31_RS04910	0.24	+0.5
108,445	-		EX31_RS04910	0.24	+0.0
108,445	-		EX31_RS04910	0.24	+1.7
108,445	-		EX31_RS04910	0.24	+0.5
108,445	-		EX31_RS04910	0.24	+0.2
108,445	-		EX31_RS04910	0.24	+0.1
108,445	-		EX31_RS04910	0.24	+0.2
108,445	-		EX31_RS04910	0.24	-0.2
108,445	-		EX31_RS04910	0.24	+0.2
108,445	-		EX31_RS04910	0.24	+0.3
108,445	-		EX31_RS04910	0.24	-0.7
108,445	-		EX31_RS04910	0.24	+0.3
108,445	-		EX31_RS04910	0.24	+0.4
108,507	+		EX31_RS04910	0.47	+0.4
108,507	+		EX31_RS04910	0.47	-0.3
108,507	+		EX31_RS04910	0.47	+0.8
108,507	+		EX31_RS04910	0.47	-0.7
108,507	+		EX31_RS04910	0.47	+0.1
108,507	+		EX31_RS04910	0.47	+0.8
108,507	+		EX31_RS04910	0.47	+0.3
108,508	-		EX31_RS04910	0.47	-0.6
108,508	-		EX31_RS04910	0.47	+0.2
108,508	-		EX31_RS04910	0.47	+0.3
108,508	-		EX31_RS04910	0.47	+1.0
108,508	-		EX31_RS04910	0.47	+0.9
108,508	-		EX31_RS04910	0.47	-0.6
108,508	-		EX31_RS04910	0.47	+0.1
108,508	-		EX31_RS04910	0.47	-0.2
108,543	+		EX31_RS04910	0.60	+1.2
108,543	+		EX31_RS04910	0.60	-0.0
108,544	-		EX31_RS04910	0.61	+0.3
108,551	-		EX31_RS04910	0.63	+0.2
108,551	-		EX31_RS04910	0.63	+0.3
108,606	-		EX31_RS04910	0.84	+0.6
108,631	+				+0.7
108,632	-				+0.2
108,654	+				-0.5
108,654	+				+0.9
108,654	+				+2.3
108,654	+				+0.3
108,654	+				-1.3
108,655	-				+0.1
108,655	-				-0.3
108,655	-				+0.6
108,655	-				+0.6
108,674	+				+0.1
108,674	+				+1.1
108,675	-				+0.2
108,742	-				-0.2
108,783	-				+0.3
108,790	+				-0.9
108,790	+				+0.1
108,790	+				+0.7
108,790	+				-0.3
108,790	+				+0.6
108,790	+				-1.0
108,790	+				-1.7
108,790	+				+1.4
108,791	-				+0.3
108,791	-				+0.2
108,791	-				+0.4
108,822	+				+0.2
108,823	-				-1.3
108,823	-				-0.4
108,823	-				+0.6
108,823	-				+0.1
108,823	-				+0.9
108,826	+				-0.2
108,826	+				+0.2
108,826	+				+0.9
108,826	+				-0.3
108,826	+				-0.3
108,826	+				+0.2
108,826	+				+1.3
108,826	+				-0.1
108,827	-				-1.0
108,827	-				-0.3
108,827	-				-0.1
108,827	-				+0.7
108,827	-				+0.1
108,827	-				-0.2
108,827	-				+0.6
108,827	-				+0.3
108,827	-				+0.5
108,829	+				-0.1
108,829	+				-1.4
108,846	+				+0.3
108,847	-				+0.0
108,871	+				+0.4
108,872	-				-0.3
109,045	+		EX31_RS04915	0.22	+0.9
109,046	-		EX31_RS04915	0.22	-1.2
109,046	-		EX31_RS04915	0.22	-0.3
109,049	+		EX31_RS04915	0.23	+0.2
109,104	+		EX31_RS04915	0.30	+0.2
109,104	+		EX31_RS04915	0.30	+0.8
109,257	+		EX31_RS04915	0.49	-0.2
109,257	+		EX31_RS04915	0.49	+0.3
109,257	+		EX31_RS04915	0.49	-0.7
109,257	+		EX31_RS04915	0.49	-0.5
109,258	-		EX31_RS04915	0.50	-0.3
109,258	-		EX31_RS04915	0.50	+0.4
109,258	-		EX31_RS04915	0.50	-0.7
109,258	-		EX31_RS04915	0.50	+0.2
109,258	-		EX31_RS04915	0.50	+1.6
109,281	+		EX31_RS04915	0.52	+0.2
109,281	+		EX31_RS04915	0.52	-0.3
109,281	+		EX31_RS04915	0.52	+0.4
109,282	-		EX31_RS04915	0.53	+0.2
109,282	-		EX31_RS04915	0.53	+0.0
109,282	-		EX31_RS04915	0.53	-0.2
109,282	-		EX31_RS04915	0.53	+0.0
109,282	-		EX31_RS04915	0.53	-0.0
109,282	-		EX31_RS04915	0.53	+0.2
109,343	+		EX31_RS04915	0.60	-0.9
109,419	+		EX31_RS04915	0.70	-1.4
109,419	+		EX31_RS04915	0.70	+0.0
109,419	+		EX31_RS04915	0.70	-0.9
109,420	-		EX31_RS04915	0.70	-0.3
109,420	-		EX31_RS04915	0.70	-1.0
109,420	-		EX31_RS04915	0.70	-0.4
109,420	-		EX31_RS04915	0.70	-1.1
109,420	-		EX31_RS04915	0.70	+1.6
109,505	-		EX31_RS04915	0.81	+0.5
109,646	+				+0.2
109,646	+				-0.2
109,646	+				+0.1
109,647	-				-0.5
109,647	-				+0.5
109,647	-				-0.2
109,652	+				-0.8
109,652	+				-0.5
109,653	-				+0.5
109,653	-				+0.2
109,657	+				+1.1
109,657	+				-0.6
109,657	+				+0.3
109,657	+				-0.4
109,657	+				+1.0
109,657	+				-0.3
109,657	+				+0.6
109,657	+				-0.7
109,657	+				-0.8
109,657	+				+2.6
109,658	-				-0.7
109,658	-				-0.4
109,658	-				-0.2
109,658	-				-0.1
109,658	-				+0.4
109,658	-				+0.5
109,658	-				+0.4
109,658	-				-0.8
109,658	-				+0.1
109,703	+				+0.1
109,703	+				-0.7
109,704	-				+1.1
109,704	-				-0.9
109,727	+				+1.0
109,728	-				-0.1
109,728	-				-0.3
109,865	+		EX31_RS04920	0.24	-0.9
109,865	+		EX31_RS04920	0.24	-0.8
109,866	-		EX31_RS04920	0.24	-0.0
109,907	-		EX31_RS04920	0.30	-0.1
109,907	-		EX31_RS04920	0.30	-0.6
109,985	+		EX31_RS04920	0.41	+2.6
109,986	-		EX31_RS04920	0.42	+0.2
110,075	-		EX31_RS04920	0.54	-0.2
110,092	-		EX31_RS04920	0.57	-0.7
110,092	-		EX31_RS04920	0.57	+1.1
110,092	-		EX31_RS04920	0.57	+0.9
110,092	-		EX31_RS04920	0.57	-0.0
110,143	+		EX31_RS04920	0.64	-0.1
110,143	+		EX31_RS04920	0.64	+0.3
110,144	-		EX31_RS04920	0.64	-1.0
110,302	-		EX31_RS04920	0.87	+0.2
110,331	+				+0.1
110,364	+				+1.3
110,365	-				+1.7
110,365	-				-0.0
110,365	-				+0.1
110,365	-				+0.8
110,378	+				+0.7
110,379	-				+1.8
110,386	+				-1.2
110,386	+				-0.1
110,387	-				-0.5
110,400	+				+1.0
110,400	+				-1.2
110,400	+				-0.3
110,401	-				-0.3
110,445	+				+0.3
110,445	+				-0.6
110,445	+				-0.2
110,446	-				+0.5
110,446	-				+2.2
110,446	-				-0.4
110,458	+				-0.0
110,458	+				+0.2
110,459	-				-0.5
110,459	-				+0.3
110,459	-				+0.6
110,463	+				+0.1
110,471	+				+0.2
110,485	+				-1.8
110,486	-				-1.1
110,494	+				-0.6
110,495	-				+0.3
110,612	+		EX31_RS04925	0.22	-0.3
110,631	+		EX31_RS04925	0.25	+0.4
110,632	-		EX31_RS04925	0.25	+1.4