Strain Fitness in Rahnella sp. WP5 around EX31_RS04400

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04395 and EX31_RS04400 are separated by 89 nucleotidesEX31_RS04400 and EX31_RS24930 are separated by 165 nucleotidesEX31_RS24930 and EX31_RS25920 are separated by 3 nucleotides EX31_RS04395: EX31_RS04395 - valine--tRNA ligase, at 408,289 to 411,144 _RS04395 EX31_RS04400: EX31_RS04400 - LysR family transcriptional regulator, at 411,234 to 412,250 _RS04400 EX31_RS24930: EX31_RS24930 - IS3 family transposase, at 412,416 to 412,676 _RS24930 EX31_RS25920: EX31_RS25920 - hypothetical protein, at 412,680 to 413,063 _RS25920 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1 2 3at 411.143 kb on - strandat 411.143 kb on - strandat 411.158 kb on + strandat 411.158 kb on + strandat 411.158 kb on + strandat 411.159 kb on - strandat 411.159 kb on - strandat 411.159 kb on - strandat 411.159 kb on - strandat 411.272 kb on + strandat 411.312 kb on - strandat 411.314 kb on + strandat 411.314 kb on + strandat 411.315 kb on - strandat 411.331 kb on + strandat 411.331 kb on + strandat 411.332 kb on - strandat 411.339 kb on - strand, within EX31_RS04400at 411.340 kb on + strand, within EX31_RS04400at 411.340 kb on + strand, within EX31_RS04400at 411.341 kb on - strand, within EX31_RS04400at 411.341 kb on - strand, within EX31_RS04400at 411.426 kb on - strand, within EX31_RS04400at 411.426 kb on - strand, within EX31_RS04400at 411.428 kb on + strand, within EX31_RS04400at 411.453 kb on + strand, within EX31_RS04400at 411.454 kb on - strand, within EX31_RS04400at 411.454 kb on - strand, within EX31_RS04400at 411.464 kb on + strand, within EX31_RS04400at 411.465 kb on - strand, within EX31_RS04400at 411.465 kb on - strand, within EX31_RS04400at 411.522 kb on - strand, within EX31_RS04400at 411.524 kb on + strand, within EX31_RS04400at 411.539 kb on + strand, within EX31_RS04400at 411.539 kb on + strand, within EX31_RS04400at 411.540 kb on - strand, within EX31_RS04400at 411.540 kb on - strand, within EX31_RS04400at 411.543 kb on + strand, within EX31_RS04400at 411.543 kb on + strand, within EX31_RS04400at 411.544 kb on - strand, within EX31_RS04400at 411.544 kb on - strand, within EX31_RS04400at 411.551 kb on + strand, within EX31_RS04400at 411.551 kb on + strand, within EX31_RS04400at 411.552 kb on - strand, within EX31_RS04400at 411.552 kb on - strand, within EX31_RS04400at 411.552 kb on - strand, within EX31_RS04400at 411.552 kb on - strand, within EX31_RS04400at 411.552 kb on - strand, within EX31_RS04400at 411.554 kb on + strand, within EX31_RS04400at 411.554 kb on + strand, within EX31_RS04400at 411.554 kb on + strand, within EX31_RS04400at 411.555 kb on - strand, within EX31_RS04400at 411.555 kb on - strand, within EX31_RS04400at 411.555 kb on - strand, within EX31_RS04400at 411.555 kb on - strand, within EX31_RS04400at 411.555 kb on - strand, within EX31_RS04400at 411.575 kb on + strand, within EX31_RS04400at 411.575 kb on + strand, within EX31_RS04400at 411.576 kb on - strand, within EX31_RS04400at 411.576 kb on - strand, within EX31_RS04400at 411.576 kb on - strand, within EX31_RS04400at 411.618 kb on - strand, within EX31_RS04400at 411.668 kb on + strand, within EX31_RS04400at 411.668 kb on + strand, within EX31_RS04400at 411.668 kb on + strand, within EX31_RS04400at 411.669 kb on - strand, within EX31_RS04400at 411.669 kb on - strand, within EX31_RS04400at 411.669 kb on - strand, within EX31_RS04400at 411.786 kb on + strand, within EX31_RS04400at 411.786 kb on + strand, within EX31_RS04400at 411.786 kb on + strand, within EX31_RS04400at 411.786 kb on + strand, within EX31_RS04400at 411.787 kb on - strand, within EX31_RS04400at 411.816 kb on + strand, within EX31_RS04400at 411.816 kb on + strand, within EX31_RS04400at 411.816 kb on + strand, within EX31_RS04400at 411.816 kb on + strand, within EX31_RS04400at 411.817 kb on - strand, within EX31_RS04400at 411.839 kb on + strand, within EX31_RS04400at 411.839 kb on + strand, within EX31_RS04400at 411.840 kb on - strand, within EX31_RS04400at 411.853 kb on + strand, within EX31_RS04400at 411.853 kb on + strand, within EX31_RS04400at 411.853 kb on + strand, within EX31_RS04400at 411.854 kb on - strand, within EX31_RS04400at 411.932 kb on - strand, within EX31_RS04400at 411.954 kb on + strand, within EX31_RS04400at 412.018 kb on + strand, within EX31_RS04400at 412.018 kb on + strand, within EX31_RS04400at 412.019 kb on - strand, within EX31_RS04400at 412.019 kb on - strand, within EX31_RS04400at 412.019 kb on - strand, within EX31_RS04400at 412.029 kb on + strand, within EX31_RS04400at 412.030 kb on - strand, within EX31_RS04400at 412.030 kb on - strand, within EX31_RS04400at 412.125 kb on - strand, within EX31_RS04400at 412.125 kb on - strand, within EX31_RS04400at 412.161 kb on - strandat 412.221 kb on - strandat 412.327 kb on + strandat 412.360 kb on - strandat 412.370 kb on + strandat 412.430 kb on + strandat 412.449 kb on - strand, within EX31_RS24930at 412.487 kb on + strand, within EX31_RS24930at 412.493 kb on + strand, within EX31_RS24930at 412.493 kb on + strand, within EX31_RS24930at 412.493 kb on + strand, within EX31_RS24930at 412.494 kb on - strand, within EX31_RS24930at 412.494 kb on - strand, within EX31_RS24930at 412.494 kb on - strand, within EX31_RS24930at 412.504 kb on + strand, within EX31_RS24930at 412.526 kb on + strand, within EX31_RS24930at 412.526 kb on + strand, within EX31_RS24930at 412.526 kb on + strand, within EX31_RS24930at 412.527 kb on - strand, within EX31_RS24930at 412.527 kb on - strand, within EX31_RS24930at 412.527 kb on - strand, within EX31_RS24930at 412.527 kb on - strand, within EX31_RS24930at 412.528 kb on + strand, within EX31_RS24930at 412.529 kb on - strand, within EX31_RS24930at 412.631 kb on + strand, within EX31_RS24930at 412.632 kb on - strand, within EX31_RS24930at 412.635 kb on + strand, within EX31_RS24930at 412.635 kb on + strand, within EX31_RS24930at 412.635 kb on + strand, within EX31_RS24930at 412.636 kb on - strand, within EX31_RS24930at 412.636 kb on - strand, within EX31_RS24930at 412.636 kb on - strand, within EX31_RS24930at 412.636 kb on - strand, within EX31_RS24930at 412.665 kb on - strandat 412.701 kb on + strandat 412.702 kb on - strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.705 kb on + strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.706 kb on - strandat 412.710 kb on + strandat 412.710 kb on + strandat 412.711 kb on - strandat 412.711 kb on - strandat 412.711 kb on - strandat 412.711 kb on - strandat 412.711 kb on - strandat 412.711 kb on - strandat 412.770 kb on - strand, within EX31_RS25920at 412.775 kb on + strand, within EX31_RS25920at 412.775 kb on + strand, within EX31_RS25920at 412.775 kb on + strand, within EX31_RS25920at 412.775 kb on + strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.776 kb on - strand, within EX31_RS25920at 412.779 kb on + strand, within EX31_RS25920at 412.780 kb on - strand, within EX31_RS25920at 412.780 kb on - strand, within EX31_RS25920at 412.780 kb on - strand, within EX31_RS25920at 412.780 kb on - strand, within EX31_RS25920at 412.780 kb on - strand, within EX31_RS25920at 412.787 kb on + strand, within EX31_RS25920at 412.805 kb on - strand, within EX31_RS25920at 412.854 kb on - strand, within EX31_RS25920at 412.878 kb on - strand, within EX31_RS25920at 412.878 kb on - strand, within EX31_RS25920at 412.890 kb on - strand, within EX31_RS25920at 412.902 kb on - strand, within EX31_RS25920at 412.902 kb on - strand, within EX31_RS25920at 412.905 kb on + strand, within EX31_RS25920at 412.905 kb on + strand, within EX31_RS25920at 412.905 kb on + strand, within EX31_RS25920at 412.906 kb on - strand, within EX31_RS25920at 412.906 kb on - strand, within EX31_RS25920at 412.906 kb on - strand, within EX31_RS25920at 412.906 kb on - strand, within EX31_RS25920at 412.906 kb on - strand, within EX31_RS25920at 412.906 kb on - strand, within EX31_RS25920at 412.906 kb on - strand, within EX31_RS25920at 412.936 kb on - strand, within EX31_RS25920at 412.936 kb on - strand, within EX31_RS25920at 413.017 kb on + strand, within EX31_RS25920at 413.090 kb on + strandat 413.176 kb on + strandat 413.177 kb on - strandat 413.177 kb on - strandat 413.177 kb on - strandat 413.178 kb on + strandat 413.178 kb on + strandat 413.178 kb on + strandat 413.178 kb on + strandat 413.179 kb on - strandat 413.187 kb on - strandat 413.208 kb on - strandat 413.231 kb on - strandat 413.231 kb on - strandat 413.233 kb on - strandat 413.233 kb on - strandat 413.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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411,143 - -0.6
411,143 - +0.2
411,158 + +0.4
411,158 + +0.4
411,158 + -1.0
411,159 - -1.2
411,159 - +0.4
411,159 - +1.2
411,159 - +0.3
411,272 + -1.6
411,312 - -0.0
411,314 + +2.0
411,314 + +0.4
411,315 - +0.7
411,331 + -0.9
411,331 + -1.0
411,332 - -0.4
411,339 - EX31_RS04400 0.10 +0.1
411,340 + EX31_RS04400 0.10 -0.8
411,340 + EX31_RS04400 0.10 +0.2
411,341 - EX31_RS04400 0.11 -0.7
411,341 - EX31_RS04400 0.11 -0.2
411,426 - EX31_RS04400 0.19 -0.3
411,426 - EX31_RS04400 0.19 +0.8
411,428 + EX31_RS04400 0.19 +0.0
411,453 + EX31_RS04400 0.22 -0.4
411,454 - EX31_RS04400 0.22 +0.3
411,454 - EX31_RS04400 0.22 +0.4
411,464 + EX31_RS04400 0.23 +0.2
411,465 - EX31_RS04400 0.23 -0.3
411,465 - EX31_RS04400 0.23 -0.5
411,522 - EX31_RS04400 0.28 -0.5
411,524 + EX31_RS04400 0.29 +1.9
411,539 + EX31_RS04400 0.30 +0.3
411,539 + EX31_RS04400 0.30 -0.9
411,540 - EX31_RS04400 0.30 -0.3
411,540 - EX31_RS04400 0.30 +0.2
411,543 + EX31_RS04400 0.30 +0.4
411,543 + EX31_RS04400 0.30 -0.9
411,544 - EX31_RS04400 0.30 -0.1
411,544 - EX31_RS04400 0.30 +0.8
411,551 + EX31_RS04400 0.31 -1.1
411,551 + EX31_RS04400 0.31 +0.4
411,552 - EX31_RS04400 0.31 -0.9
411,552 - EX31_RS04400 0.31 +0.4
411,552 - EX31_RS04400 0.31 -1.0
411,552 - EX31_RS04400 0.31 -1.1
411,552 - EX31_RS04400 0.31 +0.6
411,554 + EX31_RS04400 0.31 -0.0
411,554 + EX31_RS04400 0.31 +0.7
411,554 + EX31_RS04400 0.31 +0.6
411,555 - EX31_RS04400 0.32 +0.4
411,555 - EX31_RS04400 0.32 +0.2
411,555 - EX31_RS04400 0.32 -0.5
411,555 - EX31_RS04400 0.32 -0.2
411,555 - EX31_RS04400 0.32 -0.0
411,575 + EX31_RS04400 0.34 -0.4
411,575 + EX31_RS04400 0.34 -0.9
411,576 - EX31_RS04400 0.34 +0.3
411,576 - EX31_RS04400 0.34 -0.5
411,576 - EX31_RS04400 0.34 +0.1
411,618 - EX31_RS04400 0.38 +0.0
411,668 + EX31_RS04400 0.43 +1.3
411,668 + EX31_RS04400 0.43 +0.3
411,668 + EX31_RS04400 0.43 -0.1
411,669 - EX31_RS04400 0.43 +0.2
411,669 - EX31_RS04400 0.43 -0.6
411,669 - EX31_RS04400 0.43 -0.3
411,786 + EX31_RS04400 0.54 -0.2
411,786 + EX31_RS04400 0.54 +0.8
411,786 + EX31_RS04400 0.54 -0.4
411,786 + EX31_RS04400 0.54 -0.5
411,787 - EX31_RS04400 0.54 +0.8
411,816 + EX31_RS04400 0.57 +1.9
411,816 + EX31_RS04400 0.57 -0.4
411,816 + EX31_RS04400 0.57 -0.5
411,816 + EX31_RS04400 0.57 -0.2
411,817 - EX31_RS04400 0.57 +0.1
411,839 + EX31_RS04400 0.59 -1.4
411,839 + EX31_RS04400 0.59 +0.9
411,840 - EX31_RS04400 0.60 -0.1
411,853 + EX31_RS04400 0.61 -0.8
411,853 + EX31_RS04400 0.61 -1.3
411,853 + EX31_RS04400 0.61 +0.3
411,854 - EX31_RS04400 0.61 +0.4
411,932 - EX31_RS04400 0.69 -1.8
411,954 + EX31_RS04400 0.71 -1.9
412,018 + EX31_RS04400 0.77 +0.2
412,018 + EX31_RS04400 0.77 -0.6
412,019 - EX31_RS04400 0.77 -0.3
412,019 - EX31_RS04400 0.77 +0.2
412,019 - EX31_RS04400 0.77 +0.3
412,029 + EX31_RS04400 0.78 -1.3
412,030 - EX31_RS04400 0.78 -1.5
412,030 - EX31_RS04400 0.78 +0.7
412,125 - EX31_RS04400 0.88 +0.3
412,125 - EX31_RS04400 0.88 -0.0
412,161 - +0.6
412,221 - +0.8
412,327 + +0.2
412,360 - +1.1
412,370 + -0.7
412,430 + +1.0
412,449 - EX31_RS24930 0.13 +0.7
412,487 + EX31_RS24930 0.27 +0.5
412,493 + EX31_RS24930 0.30 +0.3
412,493 + EX31_RS24930 0.30 -1.3
412,493 + EX31_RS24930 0.30 +0.5
412,494 - EX31_RS24930 0.30 +0.8
412,494 - EX31_RS24930 0.30 +1.1
412,494 - EX31_RS24930 0.30 +0.4
412,504 + EX31_RS24930 0.34 -0.3
412,526 + EX31_RS24930 0.42 +0.8
412,526 + EX31_RS24930 0.42 +0.3
412,526 + EX31_RS24930 0.42 -1.5
412,527 - EX31_RS24930 0.43 +0.6
412,527 - EX31_RS24930 0.43 +0.3
412,527 - EX31_RS24930 0.43 +0.7
412,527 - EX31_RS24930 0.43 +0.1
412,528 + EX31_RS24930 0.43 -0.4
412,529 - EX31_RS24930 0.43 -1.7
412,631 + EX31_RS24930 0.82 +0.5
412,632 - EX31_RS24930 0.83 +0.2
412,635 + EX31_RS24930 0.84 +0.8
412,635 + EX31_RS24930 0.84 -0.0
412,635 + EX31_RS24930 0.84 -0.4
412,636 - EX31_RS24930 0.84 -1.2
412,636 - EX31_RS24930 0.84 +0.1
412,636 - EX31_RS24930 0.84 -0.4
412,636 - EX31_RS24930 0.84 -0.6
412,665 - +0.6
412,701 + +0.5
412,702 - -1.2
412,705 + -2.0
412,705 + -0.0
412,705 + -0.4
412,705 + +0.8
412,705 + +0.8
412,705 + -1.8
412,705 + -0.2
412,705 + -0.7
412,705 + +0.2
412,705 + +1.0
412,705 + -0.6
412,705 + -0.4
412,705 + -0.6
412,706 - -0.8
412,706 - -1.0
412,706 - +0.5
412,706 - +0.2
412,706 - +0.9
412,706 - +0.5
412,706 - +0.4
412,706 - +0.1
412,706 - -0.0
412,706 - +0.1
412,706 - -0.0
412,706 - +0.4
412,706 - +0.8
412,706 - +0.1
412,706 - +0.3
412,706 - +0.4
412,706 - +0.6
412,706 - -0.5
412,706 - -0.4
412,706 - +0.3
412,706 - +1.0
412,706 - -0.7
412,710 + -0.4
412,710 + +3.6
412,711 - +1.1
412,711 - +1.0
412,711 - -0.4
412,711 - -2.2
412,711 - +0.6
412,711 - +0.4
412,770 - EX31_RS25920 0.23 +0.6
412,775 + EX31_RS25920 0.25 +0.4
412,775 + EX31_RS25920 0.25 -0.7
412,775 + EX31_RS25920 0.25 +0.8
412,775 + EX31_RS25920 0.25 +1.1
412,776 - EX31_RS25920 0.25 +0.8
412,776 - EX31_RS25920 0.25 -0.6
412,776 - EX31_RS25920 0.25 -0.4
412,776 - EX31_RS25920 0.25 +0.5
412,776 - EX31_RS25920 0.25 +0.6
412,776 - EX31_RS25920 0.25 +0.9
412,776 - EX31_RS25920 0.25 -0.0
412,776 - EX31_RS25920 0.25 -1.3
412,776 - EX31_RS25920 0.25 +0.9
412,779 + EX31_RS25920 0.26 -1.1
412,780 - EX31_RS25920 0.26 -0.5
412,780 - EX31_RS25920 0.26 +0.4
412,780 - EX31_RS25920 0.26 -0.9
412,780 - EX31_RS25920 0.26 +0.3
412,780 - EX31_RS25920 0.26 -0.3
412,787 + EX31_RS25920 0.28 -0.4
412,805 - EX31_RS25920 0.33 +0.7
412,854 - EX31_RS25920 0.45 -2.3
412,878 - EX31_RS25920 0.52 -0.7
412,878 - EX31_RS25920 0.52 +0.1
412,890 - EX31_RS25920 0.55 +0.1
412,902 - EX31_RS25920 0.58 -1.8
412,902 - EX31_RS25920 0.58 +0.5
412,905 + EX31_RS25920 0.59 -1.2
412,905 + EX31_RS25920 0.59 -0.5
412,905 + EX31_RS25920 0.59 +0.1
412,906 - EX31_RS25920 0.59 +1.3
412,906 - EX31_RS25920 0.59 +1.1
412,906 - EX31_RS25920 0.59 +0.7
412,906 - EX31_RS25920 0.59 +1.3
412,906 - EX31_RS25920 0.59 -0.1
412,906 - EX31_RS25920 0.59 +0.3
412,906 - EX31_RS25920 0.59 -0.0
412,936 - EX31_RS25920 0.67 +0.7
412,936 - EX31_RS25920 0.67 -1.7
413,017 + EX31_RS25920 0.88 -1.0
413,090 + +2.0
413,176 + -1.6
413,177 - +0.3
413,177 - -1.3
413,177 - +0.2
413,178 + +1.4
413,178 + +1.4
413,178 + -2.4
413,178 + -2.0
413,179 - -0.4
413,187 - -0.7
413,208 - +1.0
413,231 - -1.1
413,231 - -0.2
413,233 - +0.9
413,233 - +0.3
413,248 - +0.8

Or see this region's nucleotide sequence