Strain Fitness in Rahnella sp. WP5 around EX31_RS02510

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02500 and EX31_RS02505 are separated by 15 nucleotidesEX31_RS02505 and EX31_RS02510 are separated by 9 nucleotidesEX31_RS02510 and EX31_RS02515 overlap by 44 nucleotides EX31_RS02500: EX31_RS02500 - LLM class flavin-dependent oxidoreductase, at 530,041 to 531,096 _RS02500 EX31_RS02505: EX31_RS02505 - hypothetical protein, at 531,112 to 531,768 _RS02505 EX31_RS02510: EX31_RS02510 - 4'-phosphopantetheinyl transferase superfamily protein, at 531,778 to 532,467 _RS02510 EX31_RS02515: EX31_RS02515 - PAS domain-containing protein, at 532,424 to 533,737 _RS02515 Position (kb) 531 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 530.817 kb on + strand, within EX31_RS02500at 530.838 kb on + strand, within EX31_RS02500at 530.838 kb on + strand, within EX31_RS02500at 530.838 kb on + strand, within EX31_RS02500at 530.838 kb on + strand, within EX31_RS02500at 530.908 kb on + strand, within EX31_RS02500at 530.908 kb on + strand, within EX31_RS02500at 530.935 kb on + strand, within EX31_RS02500at 530.936 kb on - strand, within EX31_RS02500at 531.084 kb on + strandat 531.084 kb on + strandat 531.085 kb on - strandat 531.108 kb on + strandat 531.108 kb on + strandat 531.243 kb on + strand, within EX31_RS02505at 531.244 kb on - strand, within EX31_RS02505at 531.244 kb on - strand, within EX31_RS02505at 531.244 kb on - strand, within EX31_RS02505at 531.265 kb on - strand, within EX31_RS02505at 531.297 kb on + strand, within EX31_RS02505at 531.384 kb on + strand, within EX31_RS02505at 531.394 kb on + strand, within EX31_RS02505at 531.394 kb on + strand, within EX31_RS02505at 531.395 kb on - strand, within EX31_RS02505at 531.396 kb on + strand, within EX31_RS02505at 531.396 kb on + strand, within EX31_RS02505at 531.397 kb on - strand, within EX31_RS02505at 531.397 kb on - strand, within EX31_RS02505at 531.608 kb on + strand, within EX31_RS02505at 531.608 kb on + strand, within EX31_RS02505at 531.608 kb on + strand, within EX31_RS02505at 531.609 kb on - strand, within EX31_RS02505at 531.645 kb on + strand, within EX31_RS02505at 531.799 kb on - strandat 531.860 kb on + strand, within EX31_RS02510at 531.860 kb on + strand, within EX31_RS02510at 531.892 kb on + strand, within EX31_RS02510at 531.892 kb on + strand, within EX31_RS02510at 531.893 kb on - strand, within EX31_RS02510at 531.893 kb on - strand, within EX31_RS02510at 531.893 kb on - strand, within EX31_RS02510at 531.913 kb on - strand, within EX31_RS02510at 531.925 kb on + strand, within EX31_RS02510at 531.925 kb on + strand, within EX31_RS02510at 531.925 kb on + strand, within EX31_RS02510at 531.981 kb on + strand, within EX31_RS02510at 531.982 kb on - strand, within EX31_RS02510at 532.211 kb on - strand, within EX31_RS02510at 532.276 kb on + strand, within EX31_RS02510at 532.276 kb on + strand, within EX31_RS02510at 532.276 kb on + strand, within EX31_RS02510at 532.277 kb on - strand, within EX31_RS02510at 532.277 kb on - strand, within EX31_RS02510at 532.277 kb on - strand, within EX31_RS02510at 532.558 kb on + strand, within EX31_RS02515at 532.561 kb on - strand, within EX31_RS02515at 532.654 kb on + strand, within EX31_RS02515at 533.021 kb on + strand, within EX31_RS02515at 533.135 kb on - strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.136 kb on + strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.137 kb on - strand, within EX31_RS02515at 533.155 kb on + strand, within EX31_RS02515at 533.156 kb on - strand, within EX31_RS02515at 533.156 kb on - strand, within EX31_RS02515at 533.156 kb on - strand, within EX31_RS02515at 533.302 kb on + strand, within EX31_RS02515at 533.303 kb on - strand, within EX31_RS02515at 533.303 kb on - strand, within EX31_RS02515at 533.414 kb on + strand, within EX31_RS02515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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530,817 + EX31_RS02500 0.73 -1.9
530,838 + EX31_RS02500 0.75 +0.6
530,838 + EX31_RS02500 0.75 +0.9
530,838 + EX31_RS02500 0.75 -0.3
530,838 + EX31_RS02500 0.75 +0.4
530,908 + EX31_RS02500 0.82 -0.4
530,908 + EX31_RS02500 0.82 +0.9
530,935 + EX31_RS02500 0.85 -0.5
530,936 - EX31_RS02500 0.85 +0.0
531,084 + -1.0
531,084 + -0.2
531,085 - +0.9
531,108 + -0.1
531,108 + +1.2
531,243 + EX31_RS02505 0.20 -1.1
531,244 - EX31_RS02505 0.20 +1.2
531,244 - EX31_RS02505 0.20 +1.2
531,244 - EX31_RS02505 0.20 +0.6
531,265 - EX31_RS02505 0.23 -1.0
531,297 + EX31_RS02505 0.28 +0.9
531,384 + EX31_RS02505 0.41 -0.8
531,394 + EX31_RS02505 0.43 +0.9
531,394 + EX31_RS02505 0.43 -1.3
531,395 - EX31_RS02505 0.43 +2.2
531,396 + EX31_RS02505 0.43 +0.4
531,396 + EX31_RS02505 0.43 +2.2
531,397 - EX31_RS02505 0.43 +0.3
531,397 - EX31_RS02505 0.43 +0.0
531,608 + EX31_RS02505 0.75 +1.0
531,608 + EX31_RS02505 0.75 -0.3
531,608 + EX31_RS02505 0.75 -1.1
531,609 - EX31_RS02505 0.76 +1.0
531,645 + EX31_RS02505 0.81 -0.2
531,799 - +0.0
531,860 + EX31_RS02510 0.12 -0.9
531,860 + EX31_RS02510 0.12 -1.4
531,892 + EX31_RS02510 0.17 -0.4
531,892 + EX31_RS02510 0.17 +0.1
531,893 - EX31_RS02510 0.17 +0.4
531,893 - EX31_RS02510 0.17 -0.7
531,893 - EX31_RS02510 0.17 +0.0
531,913 - EX31_RS02510 0.20 -1.3
531,925 + EX31_RS02510 0.21 -0.4
531,925 + EX31_RS02510 0.21 -1.5
531,925 + EX31_RS02510 0.21 -1.2
531,981 + EX31_RS02510 0.29 +0.5
531,982 - EX31_RS02510 0.30 +0.2
532,211 - EX31_RS02510 0.63 -1.1
532,276 + EX31_RS02510 0.72 +0.1
532,276 + EX31_RS02510 0.72 +0.2
532,276 + EX31_RS02510 0.72 -0.8
532,277 - EX31_RS02510 0.72 +0.3
532,277 - EX31_RS02510 0.72 -1.5
532,277 - EX31_RS02510 0.72 +0.2
532,558 + EX31_RS02515 0.10 -2.3
532,561 - EX31_RS02515 0.10 -1.6
532,654 + EX31_RS02515 0.18 -1.4
533,021 + EX31_RS02515 0.45 +0.6
533,135 - EX31_RS02515 0.54 -0.7
533,136 + EX31_RS02515 0.54 -1.5
533,136 + EX31_RS02515 0.54 -2.3
533,136 + EX31_RS02515 0.54 -1.5
533,136 + EX31_RS02515 0.54 +0.0
533,136 + EX31_RS02515 0.54 -0.6
533,136 + EX31_RS02515 0.54 -2.2
533,137 - EX31_RS02515 0.54 -1.0
533,137 - EX31_RS02515 0.54 -0.8
533,137 - EX31_RS02515 0.54 -2.0
533,137 - EX31_RS02515 0.54 -2.0
533,137 - EX31_RS02515 0.54 -0.6
533,155 + EX31_RS02515 0.56 -2.6
533,156 - EX31_RS02515 0.56 -0.4
533,156 - EX31_RS02515 0.56 -1.7
533,156 - EX31_RS02515 0.56 -1.5
533,302 + EX31_RS02515 0.67 -2.5
533,303 - EX31_RS02515 0.67 -0.6
533,303 - EX31_RS02515 0.67 -1.0
533,414 + EX31_RS02515 0.75 -3.5

Or see this region's nucleotide sequence