Strain Fitness in Rahnella sp. WP5 around EX31_RS01975

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01965 and EX31_RS01970 are separated by 195 nucleotidesEX31_RS01970 and EX31_RS01975 are separated by 310 nucleotidesEX31_RS01975 and EX31_RS01980 overlap by 37 nucleotides EX31_RS01965: EX31_RS01965 - DUF2931 family protein, at 430,894 to 431,544 _RS01965 EX31_RS01970: EX31_RS01970 - hypothetical protein, at 431,740 to 432,225 _RS01970 EX31_RS01975: EX31_RS01975 - type VI secretion system baseplate subunit TssF, at 432,536 to 434,299 _RS01975 EX31_RS01980: EX31_RS01980 - type VI secretion system baseplate subunit TssG, at 434,263 to 435,360 _RS01980 Position (kb) 432 433 434 435Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 431.920 kb on + strand, within EX31_RS01970at 432.120 kb on + strand, within EX31_RS01970at 432.253 kb on + strandat 432.321 kb on + strandat 432.400 kb on + strandat 432.560 kb on + strandat 432.782 kb on + strand, within EX31_RS01975at 432.782 kb on + strand, within EX31_RS01975at 432.878 kb on + strand, within EX31_RS01975at 432.878 kb on + strand, within EX31_RS01975at 432.904 kb on + strand, within EX31_RS01975at 432.905 kb on - strand, within EX31_RS01975at 432.917 kb on + strand, within EX31_RS01975at 432.922 kb on + strand, within EX31_RS01975at 432.935 kb on - strand, within EX31_RS01975at 432.935 kb on - strand, within EX31_RS01975at 433.139 kb on + strand, within EX31_RS01975at 433.139 kb on + strand, within EX31_RS01975at 433.139 kb on + strand, within EX31_RS01975at 433.140 kb on - strand, within EX31_RS01975at 433.140 kb on - strand, within EX31_RS01975at 433.140 kb on - strand, within EX31_RS01975at 433.140 kb on - strand, within EX31_RS01975at 433.140 kb on - strand, within EX31_RS01975at 433.253 kb on + strand, within EX31_RS01975at 433.272 kb on - strand, within EX31_RS01975at 433.474 kb on + strand, within EX31_RS01975at 433.474 kb on + strand, within EX31_RS01975at 433.496 kb on + strand, within EX31_RS01975at 433.497 kb on - strand, within EX31_RS01975at 433.519 kb on - strand, within EX31_RS01975at 433.531 kb on + strand, within EX31_RS01975at 433.589 kb on + strand, within EX31_RS01975at 433.589 kb on + strand, within EX31_RS01975at 433.590 kb on - strand, within EX31_RS01975at 433.590 kb on - strand, within EX31_RS01975at 433.590 kb on - strand, within EX31_RS01975at 433.653 kb on - strand, within EX31_RS01975at 433.696 kb on + strand, within EX31_RS01975at 433.696 kb on + strand, within EX31_RS01975at 433.696 kb on + strand, within EX31_RS01975at 433.697 kb on - strand, within EX31_RS01975at 433.697 kb on - strand, within EX31_RS01975at 433.791 kb on + strand, within EX31_RS01975at 433.792 kb on - strand, within EX31_RS01975at 433.818 kb on + strand, within EX31_RS01975at 433.819 kb on - strand, within EX31_RS01975at 433.839 kb on + strand, within EX31_RS01975at 433.842 kb on + strand, within EX31_RS01975at 433.842 kb on + strand, within EX31_RS01975at 433.842 kb on + strand, within EX31_RS01975at 433.892 kb on + strand, within EX31_RS01975at 433.949 kb on + strand, within EX31_RS01975at 433.950 kb on - strand, within EX31_RS01975at 433.955 kb on - strand, within EX31_RS01975at 433.980 kb on + strand, within EX31_RS01975at 434.000 kb on + strand, within EX31_RS01975at 434.000 kb on + strand, within EX31_RS01975at 434.000 kb on + strand, within EX31_RS01975at 434.000 kb on + strand, within EX31_RS01975at 434.002 kb on + strand, within EX31_RS01975at 434.002 kb on + strand, within EX31_RS01975at 434.002 kb on + strand, within EX31_RS01975at 434.002 kb on + strand, within EX31_RS01975at 434.003 kb on - strand, within EX31_RS01975at 434.214 kb on + strandat 434.227 kb on - strandat 434.326 kb on + strandat 434.327 kb on - strandat 434.328 kb on + strandat 434.329 kb on - strandat 434.329 kb on - strandat 434.329 kb on - strandat 434.421 kb on - strand, within EX31_RS01980at 434.533 kb on + strand, within EX31_RS01980at 434.533 kb on + strand, within EX31_RS01980at 434.534 kb on - strand, within EX31_RS01980at 434.556 kb on + strand, within EX31_RS01980at 434.556 kb on + strand, within EX31_RS01980at 434.556 kb on + strand, within EX31_RS01980at 434.557 kb on - strand, within EX31_RS01980at 434.557 kb on - strand, within EX31_RS01980at 434.557 kb on - strand, within EX31_RS01980at 434.557 kb on - strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.563 kb on + strand, within EX31_RS01980at 434.564 kb on - strand, within EX31_RS01980at 434.564 kb on - strand, within EX31_RS01980at 434.564 kb on - strand, within EX31_RS01980at 434.564 kb on - strand, within EX31_RS01980at 434.650 kb on + strand, within EX31_RS01980at 434.650 kb on + strand, within EX31_RS01980at 434.651 kb on - strand, within EX31_RS01980at 434.671 kb on + strand, within EX31_RS01980at 434.671 kb on + strand, within EX31_RS01980at 434.672 kb on - strand, within EX31_RS01980at 434.678 kb on - strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.750 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.760 kb on + strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.761 kb on - strand, within EX31_RS01980at 434.888 kb on + strand, within EX31_RS01980at 434.888 kb on + strand, within EX31_RS01980at 434.910 kb on + strand, within EX31_RS01980at 434.911 kb on - strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.106 kb on + strand, within EX31_RS01980at 435.107 kb on - strand, within EX31_RS01980at 435.107 kb on - strand, within EX31_RS01980at 435.134 kb on + strand, within EX31_RS01980at 435.243 kb on + strand, within EX31_RS01980at 435.243 kb on + strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.244 kb on - strand, within EX31_RS01980at 435.261 kb on + strandat 435.279 kb on + strandat 435.280 kb on - strandat 435.282 kb on + strandat 435.283 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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431,920 + EX31_RS01970 0.37 +0.3
432,120 + EX31_RS01970 0.78 +1.2
432,253 + +0.4
432,321 + -0.2
432,400 + -1.4
432,560 + +1.8
432,782 + EX31_RS01975 0.14 +0.7
432,782 + EX31_RS01975 0.14 +1.6
432,878 + EX31_RS01975 0.19 +0.1
432,878 + EX31_RS01975 0.19 -0.5
432,904 + EX31_RS01975 0.21 -2.5
432,905 - EX31_RS01975 0.21 -0.4
432,917 + EX31_RS01975 0.22 -0.7
432,922 + EX31_RS01975 0.22 -0.2
432,935 - EX31_RS01975 0.23 +0.7
432,935 - EX31_RS01975 0.23 +0.5
433,139 + EX31_RS01975 0.34 -1.5
433,139 + EX31_RS01975 0.34 -1.0
433,139 + EX31_RS01975 0.34 +0.8
433,140 - EX31_RS01975 0.34 +0.3
433,140 - EX31_RS01975 0.34 +0.6
433,140 - EX31_RS01975 0.34 -0.9
433,140 - EX31_RS01975 0.34 -0.6
433,140 - EX31_RS01975 0.34 -0.3
433,253 + EX31_RS01975 0.41 +0.1
433,272 - EX31_RS01975 0.42 +2.5
433,474 + EX31_RS01975 0.53 +0.6
433,474 + EX31_RS01975 0.53 +1.2
433,496 + EX31_RS01975 0.54 -0.6
433,497 - EX31_RS01975 0.54 -0.9
433,519 - EX31_RS01975 0.56 -0.8
433,531 + EX31_RS01975 0.56 -0.5
433,589 + EX31_RS01975 0.60 +0.3
433,589 + EX31_RS01975 0.60 -0.5
433,590 - EX31_RS01975 0.60 +0.6
433,590 - EX31_RS01975 0.60 -0.0
433,590 - EX31_RS01975 0.60 -1.5
433,653 - EX31_RS01975 0.63 +1.8
433,696 + EX31_RS01975 0.66 -1.1
433,696 + EX31_RS01975 0.66 +0.7
433,696 + EX31_RS01975 0.66 +1.2
433,697 - EX31_RS01975 0.66 -0.8
433,697 - EX31_RS01975 0.66 -0.1
433,791 + EX31_RS01975 0.71 -0.1
433,792 - EX31_RS01975 0.71 +1.3
433,818 + EX31_RS01975 0.73 -1.1
433,819 - EX31_RS01975 0.73 +0.2
433,839 + EX31_RS01975 0.74 +0.4
433,842 + EX31_RS01975 0.74 -1.0
433,842 + EX31_RS01975 0.74 +1.2
433,842 + EX31_RS01975 0.74 +0.1
433,892 + EX31_RS01975 0.77 +1.2
433,949 + EX31_RS01975 0.80 -0.3
433,950 - EX31_RS01975 0.80 +0.4
433,955 - EX31_RS01975 0.80 +0.2
433,980 + EX31_RS01975 0.82 +0.2
434,000 + EX31_RS01975 0.83 -0.3
434,000 + EX31_RS01975 0.83 +1.3
434,000 + EX31_RS01975 0.83 -0.6
434,000 + EX31_RS01975 0.83 -0.4
434,002 + EX31_RS01975 0.83 +0.7
434,002 + EX31_RS01975 0.83 -0.4
434,002 + EX31_RS01975 0.83 +4.0
434,002 + EX31_RS01975 0.83 -0.8
434,003 - EX31_RS01975 0.83 -0.6
434,214 + -0.3
434,227 - -0.7
434,326 + +1.1
434,327 - -0.7
434,328 + -0.3
434,329 - -0.6
434,329 - -1.2
434,329 - +0.4
434,421 - EX31_RS01980 0.14 +0.0
434,533 + EX31_RS01980 0.25 +0.1
434,533 + EX31_RS01980 0.25 -1.9
434,534 - EX31_RS01980 0.25 +1.1
434,556 + EX31_RS01980 0.27 -0.6
434,556 + EX31_RS01980 0.27 +0.8
434,556 + EX31_RS01980 0.27 +0.4
434,557 - EX31_RS01980 0.27 +2.4
434,557 - EX31_RS01980 0.27 -1.6
434,557 - EX31_RS01980 0.27 -1.2
434,557 - EX31_RS01980 0.27 -0.3
434,563 + EX31_RS01980 0.27 +0.0
434,563 + EX31_RS01980 0.27 +0.1
434,563 + EX31_RS01980 0.27 -1.1
434,563 + EX31_RS01980 0.27 -0.1
434,563 + EX31_RS01980 0.27 -2.1
434,563 + EX31_RS01980 0.27 +0.8
434,563 + EX31_RS01980 0.27 +0.8
434,564 - EX31_RS01980 0.27 +0.7
434,564 - EX31_RS01980 0.27 +0.9
434,564 - EX31_RS01980 0.27 +1.4
434,564 - EX31_RS01980 0.27 +0.9
434,650 + EX31_RS01980 0.35 +0.1
434,650 + EX31_RS01980 0.35 +1.2
434,651 - EX31_RS01980 0.35 -0.2
434,671 + EX31_RS01980 0.37 +1.2
434,671 + EX31_RS01980 0.37 +0.7
434,672 - EX31_RS01980 0.37 +2.2
434,678 - EX31_RS01980 0.38 +0.2
434,750 + EX31_RS01980 0.44 +0.1
434,750 + EX31_RS01980 0.44 +0.6
434,750 + EX31_RS01980 0.44 -0.5
434,750 + EX31_RS01980 0.44 -0.4
434,750 + EX31_RS01980 0.44 +0.4
434,760 + EX31_RS01980 0.45 +1.0
434,760 + EX31_RS01980 0.45 -0.8
434,760 + EX31_RS01980 0.45 -0.3
434,760 + EX31_RS01980 0.45 +0.4
434,760 + EX31_RS01980 0.45 +0.0
434,760 + EX31_RS01980 0.45 -1.2
434,761 - EX31_RS01980 0.45 -0.6
434,761 - EX31_RS01980 0.45 +0.7
434,761 - EX31_RS01980 0.45 +0.6
434,761 - EX31_RS01980 0.45 +1.3
434,761 - EX31_RS01980 0.45 +0.2
434,761 - EX31_RS01980 0.45 +1.1
434,888 + EX31_RS01980 0.57 +1.1
434,888 + EX31_RS01980 0.57 +1.2
434,910 + EX31_RS01980 0.59 +1.2
434,911 - EX31_RS01980 0.59 -0.9
435,106 + EX31_RS01980 0.77 +1.2
435,106 + EX31_RS01980 0.77 -0.2
435,106 + EX31_RS01980 0.77 +2.0
435,106 + EX31_RS01980 0.77 -2.1
435,106 + EX31_RS01980 0.77 +0.2
435,106 + EX31_RS01980 0.77 +0.7
435,107 - EX31_RS01980 0.77 +0.7
435,107 - EX31_RS01980 0.77 -1.2
435,134 + EX31_RS01980 0.79 +1.6
435,243 + EX31_RS01980 0.89 -0.8
435,243 + EX31_RS01980 0.89 -0.6
435,244 - EX31_RS01980 0.89 -1.4
435,244 - EX31_RS01980 0.89 -1.1
435,244 - EX31_RS01980 0.89 -0.8
435,244 - EX31_RS01980 0.89 -1.9
435,261 + -0.3
435,279 + +1.8
435,280 - +0.7
435,282 + -0.6
435,283 - +1.7

Or see this region's nucleotide sequence