Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02241

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02239 and CCNA_02240 overlap by 4 nucleotidesCCNA_02240 and CCNA_02241 overlap by 1 nucleotidesCCNA_02241 and CCNA_02242 are separated by 174 nucleotidesCCNA_02242 and CCNA_02243 are separated by 248 nucleotides CCNA_02239: CCNA_02239 - hypothetical protein, at 2,388,542 to 2,389,714 _02239 CCNA_02240: CCNA_02240 - glycerophosphoryl diester phosphodiesterase, at 2,389,711 to 2,390,484 _02240 CCNA_02241: CCNA_02241 - endoribonuclease L-PSP, at 2,390,484 to 2,390,951 _02241 CCNA_02242: CCNA_02242 - PHB granule-associated protein, phasin2, at 2,391,126 to 2,391,560 _02242 CCNA_02243: CCNA_02243 - D-alanyl-D-alanine serine-type carboxypeptidase, at 2,391,809 to 2,393,164 _02243 Position (kb) 2390 2391Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2389.509 kb on + strand, within CCNA_02239at 2389.509 kb on + strand, within CCNA_02239at 2389.514 kb on + strand, within CCNA_02239at 2389.517 kb on - strand, within CCNA_02239at 2389.524 kb on + strand, within CCNA_02239at 2389.524 kb on + strand, within CCNA_02239at 2389.524 kb on + strand, within CCNA_02239at 2389.524 kb on + strand, within CCNA_02239at 2389.527 kb on - strand, within CCNA_02239at 2389.643 kb on - strandat 2389.646 kb on - strandat 2389.651 kb on - strandat 2389.681 kb on + strandat 2389.694 kb on - strandat 2389.723 kb on + strandat 2389.730 kb on + strandat 2389.760 kb on + strandat 2389.768 kb on + strandat 2389.770 kb on + strandat 2389.783 kb on - strandat 2389.792 kb on + strand, within CCNA_02240at 2389.816 kb on - strand, within CCNA_02240at 2389.857 kb on - strand, within CCNA_02240at 2389.868 kb on - strand, within CCNA_02240at 2389.893 kb on + strand, within CCNA_02240at 2389.901 kb on - strandat 2389.966 kb on + strand, within CCNA_02240at 2389.981 kb on + strand, within CCNA_02240at 2390.045 kb on + strand, within CCNA_02240at 2390.108 kb on - strand, within CCNA_02240at 2390.122 kb on + strand, within CCNA_02240at 2390.130 kb on + strand, within CCNA_02240at 2390.160 kb on - strand, within CCNA_02240at 2390.170 kb on + strand, within CCNA_02240at 2390.178 kb on - strand, within CCNA_02240at 2390.187 kb on - strand, within CCNA_02240at 2390.222 kb on - strand, within CCNA_02240at 2390.271 kb on - strand, within CCNA_02240at 2390.330 kb on + strand, within CCNA_02240at 2390.330 kb on + strand, within CCNA_02240at 2390.400 kb on - strand, within CCNA_02240at 2390.430 kb on - strandat 2390.444 kb on + strandat 2390.460 kb on - strandat 2390.490 kb on - strandat 2390.523 kb on + strandat 2390.535 kb on + strand, within CCNA_02241at 2390.592 kb on + strand, within CCNA_02241at 2390.605 kb on - strand, within CCNA_02241at 2390.649 kb on - strand, within CCNA_02241at 2390.682 kb on - strand, within CCNA_02241at 2390.718 kb on - strand, within CCNA_02241at 2390.737 kb on + strand, within CCNA_02241at 2390.737 kb on - strand, within CCNA_02241at 2390.737 kb on - strand, within CCNA_02241at 2390.756 kb on + strand, within CCNA_02241at 2390.762 kb on - strand, within CCNA_02241at 2390.802 kb on - strand, within CCNA_02241at 2390.856 kb on - strand, within CCNA_02241at 2390.925 kb on - strandat 2390.928 kb on + strandat 2390.928 kb on + strandat 2390.930 kb on + strandat 2390.962 kb on + strandat 2390.980 kb on - strandat 2390.980 kb on - strandat 2391.005 kb on + strandat 2391.005 kb on + strandat 2391.013 kb on - strandat 2391.029 kb on - strandat 2391.052 kb on + strandat 2391.061 kb on - strandat 2391.081 kb on + strandat 2391.117 kb on + strandat 2391.120 kb on - strandat 2391.120 kb on - strandat 2391.122 kb on + strandat 2391.125 kb on - strandat 2391.125 kb on - strandat 2391.144 kb on - strandat 2391.164 kb on + strandat 2391.165 kb on - strandat 2391.165 kb on - strandat 2391.165 kb on - strandat 2391.197 kb on - strand, within CCNA_02242at 2391.252 kb on - strand, within CCNA_02242at 2391.264 kb on - strand, within CCNA_02242at 2391.279 kb on - strand, within CCNA_02242at 2391.286 kb on - strand, within CCNA_02242at 2391.358 kb on - strand, within CCNA_02242at 2391.393 kb on - strand, within CCNA_02242at 2391.455 kb on - strand, within CCNA_02242at 2391.462 kb on - strand, within CCNA_02242at 2391.500 kb on - strand, within CCNA_02242at 2391.522 kb on - strandat 2391.522 kb on - strandat 2391.522 kb on - strandat 2391.524 kb on - strandat 2391.532 kb on - strandat 2391.543 kb on - strandat 2391.564 kb on - strandat 2391.564 kb on - strandat 2391.568 kb on + strandat 2391.663 kb on - strandat 2391.698 kb on - strandat 2391.764 kb on - strandat 2391.769 kb on - strandat 2391.817 kb on + strandat 2391.825 kb on - strandat 2391.857 kb on + strandat 2391.867 kb on + strandat 2391.868 kb on + strandat 2391.876 kb on - strandat 2391.902 kb on + strandat 2391.908 kb on + strandat 2391.908 kb on + strandat 2391.908 kb on + strandat 2391.910 kb on - strandat 2391.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,389,509 + CCNA_02239 0.82 +0.3
2,389,509 + CCNA_02239 0.82 -0.3
2,389,514 + CCNA_02239 0.83 -1.6
2,389,517 - CCNA_02239 0.83 +0.0
2,389,524 + CCNA_02239 0.84 -0.6
2,389,524 + CCNA_02239 0.84 -0.7
2,389,524 + CCNA_02239 0.84 -0.8
2,389,524 + CCNA_02239 0.84 +0.2
2,389,527 - CCNA_02239 0.84 -0.3
2,389,643 - +1.0
2,389,646 - -0.3
2,389,651 - +0.8
2,389,681 + +1.2
2,389,694 - -0.3
2,389,723 + +0.9
2,389,730 + -2.2
2,389,760 + +0.3
2,389,768 + -1.6
2,389,770 + +0.0
2,389,783 - +0.6
2,389,792 + CCNA_02240 0.10 -0.4
2,389,816 - CCNA_02240 0.14 -0.6
2,389,857 - CCNA_02240 0.19 +0.5
2,389,868 - CCNA_02240 0.20 +1.3
2,389,893 + CCNA_02240 0.24 -0.1
2,389,901 - +1.2
2,389,966 + CCNA_02240 0.33 -0.8
2,389,981 + CCNA_02240 0.35 +1.2
2,390,045 + CCNA_02240 0.43 -1.7
2,390,108 - CCNA_02240 0.51 -0.1
2,390,122 + CCNA_02240 0.53 -0.8
2,390,130 + CCNA_02240 0.54 -0.9
2,390,160 - CCNA_02240 0.58 -0.8
2,390,170 + CCNA_02240 0.59 +0.8
2,390,178 - CCNA_02240 0.60 -1.1
2,390,187 - CCNA_02240 0.61 +0.7
2,390,222 - CCNA_02240 0.66 +1.2
2,390,271 - CCNA_02240 0.72 -0.4
2,390,330 + CCNA_02240 0.80 -1.5
2,390,330 + CCNA_02240 0.80 -0.1
2,390,400 - CCNA_02240 0.89 +2.2
2,390,430 - +1.1
2,390,444 + +1.0
2,390,460 - +0.7
2,390,490 - +1.7
2,390,523 + -1.5
2,390,535 + CCNA_02241 0.11 -2.4
2,390,592 + CCNA_02241 0.23 -2.3
2,390,605 - CCNA_02241 0.26 -1.6
2,390,649 - CCNA_02241 0.35 -1.5
2,390,682 - CCNA_02241 0.42 -0.2
2,390,718 - CCNA_02241 0.50 +0.0
2,390,737 + CCNA_02241 0.54 -0.5
2,390,737 - CCNA_02241 0.54 -0.4
2,390,737 - CCNA_02241 0.54 -2.1
2,390,756 + CCNA_02241 0.58 -0.4
2,390,762 - CCNA_02241 0.59 -1.9
2,390,802 - CCNA_02241 0.68 -1.1
2,390,856 - CCNA_02241 0.79 -2.6
2,390,925 - -1.4
2,390,928 + -0.1
2,390,928 + -2.1
2,390,930 + -1.5
2,390,962 + -1.1
2,390,980 - +0.4
2,390,980 - +0.6
2,391,005 + +0.3
2,391,005 + -0.5
2,391,013 - +1.0
2,391,029 - +0.0
2,391,052 + +0.5
2,391,061 - +3.2
2,391,081 + -1.7
2,391,117 + -0.8
2,391,120 - +1.2
2,391,120 - +1.3
2,391,122 + -2.3
2,391,125 - +0.9
2,391,125 - +0.7
2,391,144 - +0.9
2,391,164 + -1.8
2,391,165 - +0.8
2,391,165 - +0.5
2,391,165 - +0.9
2,391,197 - CCNA_02242 0.16 -1.2
2,391,252 - CCNA_02242 0.29 -1.0
2,391,264 - CCNA_02242 0.32 -0.5
2,391,279 - CCNA_02242 0.35 -1.0
2,391,286 - CCNA_02242 0.37 -1.1
2,391,358 - CCNA_02242 0.53 -1.0
2,391,393 - CCNA_02242 0.61 -2.0
2,391,455 - CCNA_02242 0.76 -1.3
2,391,462 - CCNA_02242 0.77 -1.0
2,391,500 - CCNA_02242 0.86 -0.7
2,391,522 - -0.5
2,391,522 - +0.3
2,391,522 - +0.4
2,391,524 - -1.1
2,391,532 - -0.6
2,391,543 - -0.4
2,391,564 - -0.1
2,391,564 - +0.4
2,391,568 + -1.9
2,391,663 - +0.4
2,391,698 - -0.2
2,391,764 - -2.2
2,391,769 - +0.0
2,391,817 + +0.4
2,391,825 - -2.1
2,391,857 + +1.4
2,391,867 + -0.3
2,391,868 + +0.3
2,391,876 - -0.2
2,391,902 + +0.3
2,391,908 + +0.5
2,391,908 + +0.1
2,391,908 + -0.4
2,391,910 - +0.8
2,391,938 + -0.2

Or see this region's nucleotide sequence