Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02239 and CCNA_02240 overlap by 4 nucleotides CCNA_02240 and CCNA_02241 overlap by 1 nucleotides CCNA_02241 and CCNA_02242 are separated by 174 nucleotides CCNA_02242 and CCNA_02243 are separated by 248 nucleotides
CCNA_02239: CCNA_02239 - hypothetical protein, at 2,388,542 to 2,389,714
_02239
CCNA_02240: CCNA_02240 - glycerophosphoryl diester phosphodiesterase, at 2,389,711 to 2,390,484
_02240
CCNA_02241: CCNA_02241 - endoribonuclease L-PSP, at 2,390,484 to 2,390,951
_02241
CCNA_02242: CCNA_02242 - PHB granule-associated protein, phasin2, at 2,391,126 to 2,391,560
_02242
CCNA_02243: CCNA_02243 - D-alanyl-D-alanine serine-type carboxypeptidase, at 2,391,809 to 2,393,164
_02243
Position (kb)
2390
2391 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2389.509 kb on + strand, within CCNA_02239 at 2389.509 kb on + strand, within CCNA_02239 at 2389.514 kb on + strand, within CCNA_02239 at 2389.517 kb on - strand, within CCNA_02239 at 2389.524 kb on + strand, within CCNA_02239 at 2389.524 kb on + strand, within CCNA_02239 at 2389.524 kb on + strand, within CCNA_02239 at 2389.524 kb on + strand, within CCNA_02239 at 2389.527 kb on - strand, within CCNA_02239 at 2389.643 kb on - strand at 2389.646 kb on - strand at 2389.651 kb on - strand at 2389.681 kb on + strand at 2389.694 kb on - strand at 2389.723 kb on + strand at 2389.730 kb on + strand at 2389.760 kb on + strand at 2389.768 kb on + strand at 2389.770 kb on + strand at 2389.783 kb on - strand at 2389.792 kb on + strand, within CCNA_02240 at 2389.816 kb on - strand, within CCNA_02240 at 2389.857 kb on - strand, within CCNA_02240 at 2389.868 kb on - strand, within CCNA_02240 at 2389.893 kb on + strand, within CCNA_02240 at 2389.901 kb on - strand at 2389.966 kb on + strand, within CCNA_02240 at 2389.981 kb on + strand, within CCNA_02240 at 2390.045 kb on + strand, within CCNA_02240 at 2390.108 kb on - strand, within CCNA_02240 at 2390.122 kb on + strand, within CCNA_02240 at 2390.130 kb on + strand, within CCNA_02240 at 2390.160 kb on - strand, within CCNA_02240 at 2390.170 kb on + strand, within CCNA_02240 at 2390.178 kb on - strand, within CCNA_02240 at 2390.187 kb on - strand, within CCNA_02240 at 2390.222 kb on - strand, within CCNA_02240 at 2390.271 kb on - strand, within CCNA_02240 at 2390.330 kb on + strand, within CCNA_02240 at 2390.330 kb on + strand, within CCNA_02240 at 2390.400 kb on - strand, within CCNA_02240 at 2390.430 kb on - strand at 2390.444 kb on + strand at 2390.460 kb on - strand at 2390.490 kb on - strand at 2390.523 kb on + strand at 2390.535 kb on + strand, within CCNA_02241 at 2390.592 kb on + strand, within CCNA_02241 at 2390.605 kb on - strand, within CCNA_02241 at 2390.649 kb on - strand, within CCNA_02241 at 2390.682 kb on - strand, within CCNA_02241 at 2390.718 kb on - strand, within CCNA_02241 at 2390.737 kb on + strand, within CCNA_02241 at 2390.737 kb on - strand, within CCNA_02241 at 2390.737 kb on - strand, within CCNA_02241 at 2390.756 kb on + strand, within CCNA_02241 at 2390.762 kb on - strand, within CCNA_02241 at 2390.802 kb on - strand, within CCNA_02241 at 2390.856 kb on - strand, within CCNA_02241 at 2390.925 kb on - strand at 2390.928 kb on + strand at 2390.928 kb on + strand at 2390.930 kb on + strand at 2390.962 kb on + strand at 2390.980 kb on - strand at 2390.980 kb on - strand at 2391.005 kb on + strand at 2391.005 kb on + strand at 2391.013 kb on - strand at 2391.029 kb on - strand at 2391.052 kb on + strand at 2391.061 kb on - strand at 2391.081 kb on + strand at 2391.117 kb on + strand at 2391.120 kb on - strand at 2391.120 kb on - strand at 2391.122 kb on + strand at 2391.125 kb on - strand at 2391.125 kb on - strand at 2391.144 kb on - strand at 2391.164 kb on + strand at 2391.165 kb on - strand at 2391.165 kb on - strand at 2391.165 kb on - strand at 2391.197 kb on - strand, within CCNA_02242 at 2391.252 kb on - strand, within CCNA_02242 at 2391.264 kb on - strand, within CCNA_02242 at 2391.279 kb on - strand, within CCNA_02242 at 2391.286 kb on - strand, within CCNA_02242 at 2391.358 kb on - strand, within CCNA_02242 at 2391.393 kb on - strand, within CCNA_02242 at 2391.455 kb on - strand, within CCNA_02242 at 2391.462 kb on - strand, within CCNA_02242 at 2391.500 kb on - strand, within CCNA_02242 at 2391.522 kb on - strand at 2391.522 kb on - strand at 2391.522 kb on - strand at 2391.524 kb on - strand at 2391.532 kb on - strand at 2391.543 kb on - strand at 2391.564 kb on - strand at 2391.564 kb on - strand at 2391.568 kb on + strand at 2391.663 kb on - strand at 2391.698 kb on - strand at 2391.764 kb on - strand at 2391.769 kb on - strand at 2391.817 kb on + strand at 2391.825 kb on - strand at 2391.857 kb on + strand at 2391.867 kb on + strand at 2391.868 kb on + strand at 2391.876 kb on - strand at 2391.902 kb on + strand at 2391.908 kb on + strand at 2391.908 kb on + strand at 2391.908 kb on + strand at 2391.910 kb on - strand at 2391.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 2,389,509 + CCNA_02239 0.82 +0.3 2,389,509 + CCNA_02239 0.82 -0.3 2,389,514 + CCNA_02239 0.83 -1.6 2,389,517 - CCNA_02239 0.83 +0.0 2,389,524 + CCNA_02239 0.84 -0.6 2,389,524 + CCNA_02239 0.84 -0.7 2,389,524 + CCNA_02239 0.84 -0.8 2,389,524 + CCNA_02239 0.84 +0.2 2,389,527 - CCNA_02239 0.84 -0.3 2,389,643 - +1.0 2,389,646 - -0.3 2,389,651 - +0.8 2,389,681 + +1.2 2,389,694 - -0.3 2,389,723 + +0.9 2,389,730 + -2.2 2,389,760 + +0.3 2,389,768 + -1.6 2,389,770 + +0.0 2,389,783 - +0.6 2,389,792 + CCNA_02240 0.10 -0.4 2,389,816 - CCNA_02240 0.14 -0.6 2,389,857 - CCNA_02240 0.19 +0.5 2,389,868 - CCNA_02240 0.20 +1.3 2,389,893 + CCNA_02240 0.24 -0.1 2,389,901 - +1.2 2,389,966 + CCNA_02240 0.33 -0.8 2,389,981 + CCNA_02240 0.35 +1.2 2,390,045 + CCNA_02240 0.43 -1.7 2,390,108 - CCNA_02240 0.51 -0.1 2,390,122 + CCNA_02240 0.53 -0.8 2,390,130 + CCNA_02240 0.54 -0.9 2,390,160 - CCNA_02240 0.58 -0.8 2,390,170 + CCNA_02240 0.59 +0.8 2,390,178 - CCNA_02240 0.60 -1.1 2,390,187 - CCNA_02240 0.61 +0.7 2,390,222 - CCNA_02240 0.66 +1.2 2,390,271 - CCNA_02240 0.72 -0.4 2,390,330 + CCNA_02240 0.80 -1.5 2,390,330 + CCNA_02240 0.80 -0.1 2,390,400 - CCNA_02240 0.89 +2.2 2,390,430 - +1.1 2,390,444 + +1.0 2,390,460 - +0.7 2,390,490 - +1.7 2,390,523 + -1.5 2,390,535 + CCNA_02241 0.11 -2.4 2,390,592 + CCNA_02241 0.23 -2.3 2,390,605 - CCNA_02241 0.26 -1.6 2,390,649 - CCNA_02241 0.35 -1.5 2,390,682 - CCNA_02241 0.42 -0.2 2,390,718 - CCNA_02241 0.50 +0.0 2,390,737 + CCNA_02241 0.54 -0.5 2,390,737 - CCNA_02241 0.54 -0.4 2,390,737 - CCNA_02241 0.54 -2.1 2,390,756 + CCNA_02241 0.58 -0.4 2,390,762 - CCNA_02241 0.59 -1.9 2,390,802 - CCNA_02241 0.68 -1.1 2,390,856 - CCNA_02241 0.79 -2.6 2,390,925 - -1.4 2,390,928 + -0.1 2,390,928 + -2.1 2,390,930 + -1.5 2,390,962 + -1.1 2,390,980 - +0.4 2,390,980 - +0.6 2,391,005 + +0.3 2,391,005 + -0.5 2,391,013 - +1.0 2,391,029 - +0.0 2,391,052 + +0.5 2,391,061 - +3.2 2,391,081 + -1.7 2,391,117 + -0.8 2,391,120 - +1.2 2,391,120 - +1.3 2,391,122 + -2.3 2,391,125 - +0.9 2,391,125 - +0.7 2,391,144 - +0.9 2,391,164 + -1.8 2,391,165 - +0.8 2,391,165 - +0.5 2,391,165 - +0.9 2,391,197 - CCNA_02242 0.16 -1.2 2,391,252 - CCNA_02242 0.29 -1.0 2,391,264 - CCNA_02242 0.32 -0.5 2,391,279 - CCNA_02242 0.35 -1.0 2,391,286 - CCNA_02242 0.37 -1.1 2,391,358 - CCNA_02242 0.53 -1.0 2,391,393 - CCNA_02242 0.61 -2.0 2,391,455 - CCNA_02242 0.76 -1.3 2,391,462 - CCNA_02242 0.77 -1.0 2,391,500 - CCNA_02242 0.86 -0.7 2,391,522 - -0.5 2,391,522 - +0.3 2,391,522 - +0.4 2,391,524 - -1.1 2,391,532 - -0.6 2,391,543 - -0.4 2,391,564 - -0.1 2,391,564 - +0.4 2,391,568 + -1.9 2,391,663 - +0.4 2,391,698 - -0.2 2,391,764 - -2.2 2,391,769 - +0.0 2,391,817 + +0.4 2,391,825 - -2.1 2,391,857 + +1.4 2,391,867 + -0.3 2,391,868 + +0.3 2,391,876 - -0.2 2,391,902 + +0.3 2,391,908 + +0.5 2,391,908 + +0.1 2,391,908 + -0.4 2,391,910 - +0.8 2,391,938 + -0.2
Or see this region's nucleotide sequence