Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01491

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01490 and CCNA_01491 are separated by 9 nucleotidesCCNA_01491 and CCNA_01492 are separated by 24 nucleotidesCCNA_01492 and CCNA_01493 are separated by 73 nucleotides CCNA_01490: CCNA_01490 - FAD-dependent dehydrogenase, at 1,598,349 to 1,599,989 _01490 CCNA_01491: CCNA_01491 - cystathionine beta-lyase, at 1,599,999 to 1,601,159 _01491 CCNA_01492: CCNA_01492 - 3-mercaptopyruvate sulfurtransferase, at 1,601,184 to 1,602,041 _01492 CCNA_01493: CCNA_01493 - cysteine synthase, at 1,602,115 to 1,603,113 _01493 Position (kb) 1599 1600 1601 1602Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1599.007 kb on + strand, within CCNA_01490at 1599.051 kb on + strand, within CCNA_01490at 1599.096 kb on + strand, within CCNA_01490at 1599.101 kb on + strand, within CCNA_01490at 1599.101 kb on + strand, within CCNA_01490at 1599.109 kb on - strand, within CCNA_01490at 1599.141 kb on + strand, within CCNA_01490at 1599.152 kb on + strand, within CCNA_01490at 1599.155 kb on - strand, within CCNA_01490at 1599.175 kb on + strand, within CCNA_01490at 1599.207 kb on - strand, within CCNA_01490at 1599.211 kb on - strand, within CCNA_01490at 1599.221 kb on + strand, within CCNA_01490at 1599.333 kb on + strand, within CCNA_01490at 1599.351 kb on + strand, within CCNA_01490at 1599.351 kb on + strand, within CCNA_01490at 1599.351 kb on + strand, within CCNA_01490at 1599.351 kb on + strand, within CCNA_01490at 1599.351 kb on + strand, within CCNA_01490at 1599.351 kb on + strand, within CCNA_01490at 1599.351 kb on + strand, within CCNA_01490at 1599.359 kb on - strand, within CCNA_01490at 1599.392 kb on - strand, within CCNA_01490at 1599.441 kb on - strand, within CCNA_01490at 1599.460 kb on - strand, within CCNA_01490at 1599.462 kb on + strand, within CCNA_01490at 1599.533 kb on - strand, within CCNA_01490at 1599.588 kb on - strand, within CCNA_01490at 1599.593 kb on - strand, within CCNA_01490at 1599.651 kb on - strand, within CCNA_01490at 1599.669 kb on - strand, within CCNA_01490at 1599.755 kb on - strand, within CCNA_01490at 1599.760 kb on + strand, within CCNA_01490at 1599.845 kb on - strandat 1599.847 kb on + strandat 1599.848 kb on + strandat 1599.854 kb on - strandat 1599.882 kb on + strandat 1599.933 kb on - strandat 1599.969 kb on + strandat 1599.969 kb on + strandat 1599.974 kb on + strandat 1599.997 kb on + strandat 1599.997 kb on + strandat 1599.997 kb on + strandat 1599.997 kb on + strandat 1600.005 kb on - strandat 1600.005 kb on - strandat 1600.005 kb on - strandat 1600.012 kb on + strandat 1600.014 kb on + strandat 1600.021 kb on + strandat 1600.022 kb on - strandat 1600.022 kb on - strandat 1600.053 kb on - strandat 1600.053 kb on - strandat 1600.053 kb on - strandat 1600.053 kb on - strandat 1600.060 kb on + strandat 1600.090 kb on + strandat 1600.106 kb on - strandat 1600.138 kb on - strand, within CCNA_01491at 1600.143 kb on + strand, within CCNA_01491at 1600.148 kb on + strand, within CCNA_01491at 1600.151 kb on - strand, within CCNA_01491at 1600.156 kb on - strand, within CCNA_01491at 1600.187 kb on - strand, within CCNA_01491at 1600.187 kb on - strand, within CCNA_01491at 1600.237 kb on + strand, within CCNA_01491at 1600.257 kb on - strand, within CCNA_01491at 1600.257 kb on - strand, within CCNA_01491at 1600.331 kb on - strand, within CCNA_01491at 1600.360 kb on - strand, within CCNA_01491at 1600.360 kb on - strand, within CCNA_01491at 1600.360 kb on - strand, within CCNA_01491at 1600.385 kb on - strand, within CCNA_01491at 1600.395 kb on + strand, within CCNA_01491at 1600.423 kb on - strand, within CCNA_01491at 1600.434 kb on + strand, within CCNA_01491at 1600.435 kb on + strand, within CCNA_01491at 1600.435 kb on + strand, within CCNA_01491at 1600.438 kb on - strand, within CCNA_01491at 1600.443 kb on - strand, within CCNA_01491at 1600.443 kb on - strand, within CCNA_01491at 1600.443 kb on - strand, within CCNA_01491at 1600.486 kb on + strand, within CCNA_01491at 1600.494 kb on - strand, within CCNA_01491at 1600.500 kb on - strand, within CCNA_01491at 1600.515 kb on + strand, within CCNA_01491at 1600.523 kb on - strand, within CCNA_01491at 1600.576 kb on - strand, within CCNA_01491at 1600.603 kb on + strand, within CCNA_01491at 1600.742 kb on + strand, within CCNA_01491at 1600.764 kb on - strand, within CCNA_01491at 1600.782 kb on - strand, within CCNA_01491at 1600.787 kb on + strand, within CCNA_01491at 1600.787 kb on + strand, within CCNA_01491at 1600.787 kb on + strand, within CCNA_01491at 1600.795 kb on - strand, within CCNA_01491at 1600.795 kb on - strand, within CCNA_01491at 1600.815 kb on - strand, within CCNA_01491at 1600.863 kb on + strand, within CCNA_01491at 1600.877 kb on - strand, within CCNA_01491at 1600.932 kb on - strand, within CCNA_01491at 1600.944 kb on - strand, within CCNA_01491at 1600.951 kb on - strand, within CCNA_01491at 1600.966 kb on + strand, within CCNA_01491at 1600.970 kb on - strand, within CCNA_01491at 1601.004 kb on - strand, within CCNA_01491at 1601.027 kb on + strand, within CCNA_01491at 1601.043 kb on - strand, within CCNA_01491at 1601.045 kb on - strandat 1601.068 kb on - strandat 1601.079 kb on - strandat 1601.114 kb on - strandat 1601.121 kb on + strandat 1601.164 kb on + strandat 1601.253 kb on - strandat 1601.255 kb on + strandat 1601.263 kb on - strandat 1601.265 kb on + strandat 1601.325 kb on + strand, within CCNA_01492at 1601.325 kb on + strand, within CCNA_01492at 1601.333 kb on + strand, within CCNA_01492at 1601.333 kb on - strand, within CCNA_01492at 1601.396 kb on + strand, within CCNA_01492at 1601.404 kb on - strand, within CCNA_01492at 1601.409 kb on - strand, within CCNA_01492at 1601.480 kb on + strand, within CCNA_01492at 1601.480 kb on + strand, within CCNA_01492at 1601.480 kb on + strand, within CCNA_01492at 1601.480 kb on + strand, within CCNA_01492at 1601.488 kb on - strand, within CCNA_01492at 1601.488 kb on - strand, within CCNA_01492at 1601.488 kb on - strand, within CCNA_01492at 1601.488 kb on - strand, within CCNA_01492at 1601.488 kb on - strand, within CCNA_01492at 1601.493 kb on - strand, within CCNA_01492at 1601.625 kb on + strand, within CCNA_01492at 1601.687 kb on - strand, within CCNA_01492at 1601.757 kb on + strand, within CCNA_01492at 1601.763 kb on - strand, within CCNA_01492at 1601.765 kb on - strand, within CCNA_01492at 1601.765 kb on - strand, within CCNA_01492at 1601.765 kb on - strand, within CCNA_01492at 1601.765 kb on - strand, within CCNA_01492at 1601.789 kb on + strand, within CCNA_01492at 1601.797 kb on - strand, within CCNA_01492at 1601.797 kb on - strand, within CCNA_01492at 1601.832 kb on + strand, within CCNA_01492at 1601.847 kb on + strand, within CCNA_01492at 1601.901 kb on - strand, within CCNA_01492at 1601.958 kb on + strandat 1601.992 kb on - strandat 1602.004 kb on - strandat 1602.005 kb on + strandat 1602.071 kb on + strandat 1602.071 kb on + strandat 1602.079 kb on - strandat 1602.079 kb on - strandat 1602.079 kb on - strandat 1602.079 kb on - strandat 1602.079 kb on - strandat 1602.127 kb on - strandat 1602.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,599,007 + CCNA_01490 0.40 +0.2
1,599,051 + CCNA_01490 0.43 +1.8
1,599,096 + CCNA_01490 0.46 +1.1
1,599,101 + CCNA_01490 0.46 +0.3
1,599,101 + CCNA_01490 0.46 +1.5
1,599,109 - CCNA_01490 0.46 -1.2
1,599,141 + CCNA_01490 0.48 +0.7
1,599,152 + CCNA_01490 0.49 +0.8
1,599,155 - CCNA_01490 0.49 -0.5
1,599,175 + CCNA_01490 0.50 +0.5
1,599,207 - CCNA_01490 0.52 -1.0
1,599,211 - CCNA_01490 0.53 +1.0
1,599,221 + CCNA_01490 0.53 +0.8
1,599,333 + CCNA_01490 0.60 +1.5
1,599,351 + CCNA_01490 0.61 +1.1
1,599,351 + CCNA_01490 0.61 -0.6
1,599,351 + CCNA_01490 0.61 +0.2
1,599,351 + CCNA_01490 0.61 +0.6
1,599,351 + CCNA_01490 0.61 +1.2
1,599,351 + CCNA_01490 0.61 +1.6
1,599,351 + CCNA_01490 0.61 +0.3
1,599,359 - CCNA_01490 0.62 -1.6
1,599,392 - CCNA_01490 0.64 -1.7
1,599,441 - CCNA_01490 0.67 -0.4
1,599,460 - CCNA_01490 0.68 +0.8
1,599,462 + CCNA_01490 0.68 +1.5
1,599,533 - CCNA_01490 0.72 +0.9
1,599,588 - CCNA_01490 0.76 -1.5
1,599,593 - CCNA_01490 0.76 -0.8
1,599,651 - CCNA_01490 0.79 -0.3
1,599,669 - CCNA_01490 0.80 -0.5
1,599,755 - CCNA_01490 0.86 -2.5
1,599,760 + CCNA_01490 0.86 +0.9
1,599,845 - +0.6
1,599,847 + -0.1
1,599,848 + +0.2
1,599,854 - +0.5
1,599,882 + +0.2
1,599,933 - +0.1
1,599,969 + -0.8
1,599,969 + +0.3
1,599,974 + +1.8
1,599,997 + -0.0
1,599,997 + -0.7
1,599,997 + +0.9
1,599,997 + +0.1
1,600,005 - +0.9
1,600,005 - +0.8
1,600,005 - -0.6
1,600,012 + -0.8
1,600,014 + -0.7
1,600,021 + -1.0
1,600,022 - +3.5
1,600,022 - +0.7
1,600,053 - -0.4
1,600,053 - -0.4
1,600,053 - -1.0
1,600,053 - -1.7
1,600,060 + +0.2
1,600,090 + -0.8
1,600,106 - -1.6
1,600,138 - CCNA_01491 0.12 +0.4
1,600,143 + CCNA_01491 0.12 +0.6
1,600,148 + CCNA_01491 0.13 -1.0
1,600,151 - CCNA_01491 0.13 -0.2
1,600,156 - CCNA_01491 0.14 -0.7
1,600,187 - CCNA_01491 0.16 -0.2
1,600,187 - CCNA_01491 0.16 -1.2
1,600,237 + CCNA_01491 0.20 -2.0
1,600,257 - CCNA_01491 0.22 -1.4
1,600,257 - CCNA_01491 0.22 -0.2
1,600,331 - CCNA_01491 0.29 -1.7
1,600,360 - CCNA_01491 0.31 -0.7
1,600,360 - CCNA_01491 0.31 -0.5
1,600,360 - CCNA_01491 0.31 -1.2
1,600,385 - CCNA_01491 0.33 +0.5
1,600,395 + CCNA_01491 0.34 -1.1
1,600,423 - CCNA_01491 0.37 -0.3
1,600,434 + CCNA_01491 0.37 -1.3
1,600,435 + CCNA_01491 0.38 -1.6
1,600,435 + CCNA_01491 0.38 -0.9
1,600,438 - CCNA_01491 0.38 +0.1
1,600,443 - CCNA_01491 0.38 -0.4
1,600,443 - CCNA_01491 0.38 -0.9
1,600,443 - CCNA_01491 0.38 +0.5
1,600,486 + CCNA_01491 0.42 -1.4
1,600,494 - CCNA_01491 0.43 +0.4
1,600,500 - CCNA_01491 0.43 +0.1
1,600,515 + CCNA_01491 0.44 -2.2
1,600,523 - CCNA_01491 0.45 -0.1
1,600,576 - CCNA_01491 0.50 -1.5
1,600,603 + CCNA_01491 0.52 -1.2
1,600,742 + CCNA_01491 0.64 +0.5
1,600,764 - CCNA_01491 0.66 +0.0
1,600,782 - CCNA_01491 0.67 -1.9
1,600,787 + CCNA_01491 0.68 -0.4
1,600,787 + CCNA_01491 0.68 +1.5
1,600,787 + CCNA_01491 0.68 +0.2
1,600,795 - CCNA_01491 0.69 -0.5
1,600,795 - CCNA_01491 0.69 -0.4
1,600,815 - CCNA_01491 0.70 +0.3
1,600,863 + CCNA_01491 0.74 -1.1
1,600,877 - CCNA_01491 0.76 +0.2
1,600,932 - CCNA_01491 0.80 -1.3
1,600,944 - CCNA_01491 0.81 -1.5
1,600,951 - CCNA_01491 0.82 -1.0
1,600,966 + CCNA_01491 0.83 -1.5
1,600,970 - CCNA_01491 0.84 -1.0
1,601,004 - CCNA_01491 0.87 -0.7
1,601,027 + CCNA_01491 0.89 -0.8
1,601,043 - CCNA_01491 0.90 -0.7
1,601,045 - -0.7
1,601,068 - -0.7
1,601,079 - -1.0
1,601,114 - +0.1
1,601,121 + -0.1
1,601,164 + +1.1
1,601,253 - +1.4
1,601,255 + +1.2
1,601,263 - +0.6
1,601,265 + +0.5
1,601,325 + CCNA_01492 0.16 -2.2
1,601,325 + CCNA_01492 0.16 -1.6
1,601,333 + CCNA_01492 0.17 -0.3
1,601,333 - CCNA_01492 0.17 +1.4
1,601,396 + CCNA_01492 0.25 +0.1
1,601,404 - CCNA_01492 0.26 +0.7
1,601,409 - CCNA_01492 0.26 +2.3
1,601,480 + CCNA_01492 0.34 +2.1
1,601,480 + CCNA_01492 0.34 +1.2
1,601,480 + CCNA_01492 0.34 +0.9
1,601,480 + CCNA_01492 0.34 -0.4
1,601,488 - CCNA_01492 0.35 +0.8
1,601,488 - CCNA_01492 0.35 +0.3
1,601,488 - CCNA_01492 0.35 +1.9
1,601,488 - CCNA_01492 0.35 +1.1
1,601,488 - CCNA_01492 0.35 +0.8
1,601,493 - CCNA_01492 0.36 +0.9
1,601,625 + CCNA_01492 0.51 -2.8
1,601,687 - CCNA_01492 0.59 +0.9
1,601,757 + CCNA_01492 0.67 -0.8
1,601,763 - CCNA_01492 0.67 +0.9
1,601,765 - CCNA_01492 0.68 +0.9
1,601,765 - CCNA_01492 0.68 +1.1
1,601,765 - CCNA_01492 0.68 +0.7
1,601,765 - CCNA_01492 0.68 +0.4
1,601,789 + CCNA_01492 0.71 -1.3
1,601,797 - CCNA_01492 0.71 +0.8
1,601,797 - CCNA_01492 0.71 +1.5
1,601,832 + CCNA_01492 0.76 +0.3
1,601,847 + CCNA_01492 0.77 -0.9
1,601,901 - CCNA_01492 0.84 -0.3
1,601,958 + -0.5
1,601,992 - +1.4
1,602,004 - +1.1
1,602,005 + -2.2
1,602,071 + -0.9
1,602,071 + -1.8
1,602,079 - -1.4
1,602,079 - +0.4
1,602,079 - +0.1
1,602,079 - -0.0
1,602,079 - +0.3
1,602,127 - -0.7
1,602,127 - +1.0

Or see this region's nucleotide sequence