Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00003 and CCNA_00004 are separated by 1 nucleotides CCNA_00004 and CCNA_00005 are separated by 31 nucleotides CCNA_00005 and CCNA_00006 are separated by 118 nucleotides
CCNA_00003: CCNA_00003 - shikimate dehydrogenase (EC 1.1.1.25) <small>(from data)</small>, at 1,700 to 2,557
_00003
CCNA_00004: CCNA_00004 - dephospho-CoA kinase, at 2,559 to 3,158
_00004
CCNA_00005: CCNA_00005 - DNA polymerase III, epsilon chain, at 3,190 to 3,903
_00005
CCNA_00006: CCNA_00006 - enoyl-CoA hydratase, at 4,022 to 4,810
_00006
Position (kb) 3
4 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 2.196 kb on + strand, within CCNA_00003 at 2.196 kb on + strand, within CCNA_00003 at 2.200 kb on + strand, within CCNA_00003 at 2.204 kb on - strand, within CCNA_00003 at 2.204 kb on - strand, within CCNA_00003 at 2.204 kb on - strand, within CCNA_00003 at 2.227 kb on + strand, within CCNA_00003 at 2.276 kb on + strand, within CCNA_00003 at 2.298 kb on + strand, within CCNA_00003 at 2.298 kb on + strand, within CCNA_00003 at 2.303 kb on + strand, within CCNA_00003 at 2.303 kb on + strand, within CCNA_00003 at 2.306 kb on - strand, within CCNA_00003 at 2.311 kb on - strand, within CCNA_00003 at 2.316 kb on + strand, within CCNA_00003 at 2.323 kb on + strand, within CCNA_00003 at 2.399 kb on - strand, within CCNA_00003 at 2.407 kb on - strand, within CCNA_00003 at 2.427 kb on + strand, within CCNA_00003 at 2.442 kb on + strand, within CCNA_00003 at 2.442 kb on + strand, within CCNA_00003 at 2.442 kb on + strand, within CCNA_00003 at 2.450 kb on - strand, within CCNA_00003 at 2.458 kb on + strand, within CCNA_00003 at 2.487 kb on + strand at 2.539 kb on + strand at 2.552 kb on + strand at 3.113 kb on + strand at 3.131 kb on - strand at 3.134 kb on + strand at 3.142 kb on - strand at 3.142 kb on - strand at 3.142 kb on - strand at 3.142 kb on - strand at 3.142 kb on - strand at 3.153 kb on + strand at 3.161 kb on - strand at 3.187 kb on + strand at 3.195 kb on - strand at 3.917 kb on - strand at 3.920 kb on + strand at 3.937 kb on + strand at 3.951 kb on + strand at 3.951 kb on + strand at 3.951 kb on + strand at 3.959 kb on - strand at 3.959 kb on - strand at 3.964 kb on - strand at 3.964 kb on - strand at 3.977 kb on - strand at 3.977 kb on - strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.987 kb on + strand at 3.989 kb on + strand at 3.989 kb on + strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.995 kb on - strand at 3.997 kb on - strand at 4.012 kb on + strand at 4.030 kb on + strand at 4.030 kb on + strand at 4.030 kb on + strand at 4.038 kb on - strand at 4.038 kb on - strand at 4.038 kb on - strand at 4.060 kb on - strand at 4.071 kb on + strand at 4.076 kb on + strand at 4.079 kb on - strand at 4.084 kb on - strand at 4.084 kb on - strand at 4.084 kb on - strand at 4.084 kb on - strand at 4.084 kb on - strand at 4.093 kb on - strand at 4.094 kb on - strand at 4.095 kb on + strand at 4.103 kb on - strand, within CCNA_00006 at 4.120 kb on - strand, within CCNA_00006 at 4.122 kb on - strand, within CCNA_00006 at 4.130 kb on - strand, within CCNA_00006 at 4.137 kb on + strand, within CCNA_00006 at 4.150 kb on - strand, within CCNA_00006 at 4.166 kb on + strand, within CCNA_00006 at 4.175 kb on + strand, within CCNA_00006 at 4.185 kb on + strand, within CCNA_00006 at 4.190 kb on + strand, within CCNA_00006 at 4.246 kb on + strand, within CCNA_00006 at 4.247 kb on + strand, within CCNA_00006 at 4.255 kb on - strand, within CCNA_00006 at 4.274 kb on - strand, within CCNA_00006 at 4.275 kb on - strand, within CCNA_00006 at 4.275 kb on - strand, within CCNA_00006 at 4.304 kb on + strand, within CCNA_00006 at 4.329 kb on + strand, within CCNA_00006 at 4.351 kb on - strand, within CCNA_00006 at 4.386 kb on + strand, within CCNA_00006 at 4.386 kb on + strand, within CCNA_00006 at 4.407 kb on + strand, within CCNA_00006 at 4.428 kb on + strand, within CCNA_00006 at 4.492 kb on + strand, within CCNA_00006 at 4.492 kb on + strand, within CCNA_00006 at 4.492 kb on + strand, within CCNA_00006 at 4.492 kb on + strand, within CCNA_00006 at 4.492 kb on + strand, within CCNA_00006 at 4.500 kb on - strand, within CCNA_00006 at 4.500 kb on - strand, within CCNA_00006 at 4.500 kb on - strand, within CCNA_00006 at 4.500 kb on - strand, within CCNA_00006 at 4.500 kb on - strand, within CCNA_00006 at 4.500 kb on - strand, within CCNA_00006 at 4.500 kb on - strand, within CCNA_00006 at 4.500 kb on - strand, within CCNA_00006 at 4.519 kb on - strand, within CCNA_00006 at 4.587 kb on + strand, within CCNA_00006 at 4.603 kb on - strand, within CCNA_00006 at 4.661 kb on + strand, within CCNA_00006 at 4.666 kb on + strand, within CCNA_00006 at 4.674 kb on - strand, within CCNA_00006 at 4.688 kb on + strand, within CCNA_00006 at 4.783 kb on + strand at 4.783 kb on + strand at 4.783 kb on + strand at 4.783 kb on - strand at 4.791 kb on - strand at 4.795 kb on + strand at 4.795 kb on + strand at 4.795 kb on + strand at 4.795 kb on + strand at 4.795 kb on + strand at 4.795 kb on + strand at 4.795 kb on + strand at 4.795 kb on + strand at 4.803 kb on - strand at 4.803 kb on - strand at 4.803 kb on - strand at 4.815 kb on + strand at 4.863 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 2,196 + CCNA_00003 0.58 -1.5 2,196 + CCNA_00003 0.58 -1.8 2,200 + CCNA_00003 0.58 -1.2 2,204 - CCNA_00003 0.59 -3.3 2,204 - CCNA_00003 0.59 -1.9 2,204 - CCNA_00003 0.59 -2.5 2,227 + CCNA_00003 0.61 -3.4 2,276 + CCNA_00003 0.67 -2.5 2,298 + CCNA_00003 0.70 -2.4 2,298 + CCNA_00003 0.70 -3.4 2,303 + CCNA_00003 0.70 -4.0 2,303 + CCNA_00003 0.70 -0.9 2,306 - CCNA_00003 0.71 +0.1 2,311 - CCNA_00003 0.71 -0.9 2,316 + CCNA_00003 0.72 -0.5 2,323 + CCNA_00003 0.73 -3.1 2,399 - CCNA_00003 0.81 -2.1 2,407 - CCNA_00003 0.82 -3.8 2,427 + CCNA_00003 0.85 -3.7 2,442 + CCNA_00003 0.86 -5.0 2,442 + CCNA_00003 0.86 -2.9 2,442 + CCNA_00003 0.86 -4.8 2,450 - CCNA_00003 0.87 -1.6 2,458 + CCNA_00003 0.88 -2.3 2,487 + -0.9 2,539 + +1.8 2,552 + -0.2 3,113 + +0.3 3,131 - -0.8 3,134 + -0.1 3,142 - +0.9 3,142 - -0.5 3,142 - -0.2 3,142 - -0.7 3,142 - +1.1 3,153 + +0.2 3,161 - -0.3 3,187 + +0.2 3,195 - -1.1 3,917 - +0.3 3,920 + +1.3 3,937 + -0.3 3,951 + +0.8 3,951 + +0.8 3,951 + +1.2 3,959 - +0.9 3,959 - +0.3 3,964 - +0.6 3,964 - -0.6 3,977 - +0.1 3,977 - +0.5 3,987 + +1.3 3,987 + +0.3 3,987 + +0.4 3,987 + +0.2 3,987 + -0.2 3,987 + -0.8 3,987 + +1.0 3,987 + +1.4 3,987 + +1.3 3,987 + +1.2 3,987 + +0.8 3,987 + +0.7 3,987 + +0.9 3,987 + +0.6 3,987 + +1.1 3,987 + +0.1 3,987 + +1.4 3,989 + +0.6 3,989 + -0.6 3,995 - +2.3 3,995 - -0.5 3,995 - -1.7 3,995 - -2.0 3,995 - -0.3 3,995 - +0.6 3,995 - -0.5 3,995 - +0.5 3,995 - +1.0 3,995 - -0.1 3,995 - -1.9 3,995 - +0.4 3,995 - -2.1 3,995 - -0.5 3,995 - +0.5 3,995 - +0.9 3,995 - -1.9 3,995 - +1.1 3,995 - -0.4 3,995 - +0.4 3,995 - -0.0 3,995 - -1.6 3,995 - -0.1 3,995 - +2.4 3,995 - +0.4 3,997 - +0.4 4,012 + -0.2 4,030 + +0.4 4,030 + -0.1 4,030 + -0.0 4,038 - +0.1 4,038 - -0.1 4,038 - +0.4 4,060 - -0.1 4,071 + +1.7 4,076 + +3.4 4,079 - +0.2 4,084 - +0.4 4,084 - +2.4 4,084 - +0.5 4,084 - +0.1 4,084 - +1.4 4,093 - -2.0 4,094 - +0.2 4,095 + +1.3 4,103 - CCNA_00006 0.10 -0.9 4,120 - CCNA_00006 0.12 +0.4 4,122 - CCNA_00006 0.13 +0.2 4,130 - CCNA_00006 0.14 +0.4 4,137 + CCNA_00006 0.15 +2.9 4,150 - CCNA_00006 0.16 +0.2 4,166 + CCNA_00006 0.18 +2.0 4,175 + CCNA_00006 0.19 +1.3 4,185 + CCNA_00006 0.21 +1.3 4,190 + CCNA_00006 0.21 +1.8 4,246 + CCNA_00006 0.28 +1.5 4,247 + CCNA_00006 0.29 +1.7 4,255 - CCNA_00006 0.30 +0.4 4,274 - CCNA_00006 0.32 +1.5 4,275 - CCNA_00006 0.32 -2.8 4,275 - CCNA_00006 0.32 +2.4 4,304 + CCNA_00006 0.36 +0.6 4,329 + CCNA_00006 0.39 +2.3 4,351 - CCNA_00006 0.42 -1.5 4,386 + CCNA_00006 0.46 +1.1 4,386 + CCNA_00006 0.46 +0.3 4,407 + CCNA_00006 0.49 +1.1 4,428 + CCNA_00006 0.51 +2.4 4,492 + CCNA_00006 0.60 +0.2 4,492 + CCNA_00006 0.60 +1.2 4,492 + CCNA_00006 0.60 +1.1 4,492 + CCNA_00006 0.60 +1.1 4,492 + CCNA_00006 0.60 +1.2 4,500 - CCNA_00006 0.61 +0.9 4,500 - CCNA_00006 0.61 -1.2 4,500 - CCNA_00006 0.61 +0.9 4,500 - CCNA_00006 0.61 +1.4 4,500 - CCNA_00006 0.61 +2.2 4,500 - CCNA_00006 0.61 +0.6 4,500 - CCNA_00006 0.61 +0.5 4,500 - CCNA_00006 0.61 -0.7 4,519 - CCNA_00006 0.63 +0.7 4,587 + CCNA_00006 0.72 +2.0 4,603 - CCNA_00006 0.74 -2.2 4,661 + CCNA_00006 0.81 +1.2 4,666 + CCNA_00006 0.82 +1.7 4,674 - CCNA_00006 0.83 -1.6 4,688 + CCNA_00006 0.84 +2.1 4,783 + +2.0 4,783 + +0.2 4,783 + +1.8 4,783 - +1.3 4,791 - +1.9 4,795 + +1.1 4,795 + +1.5 4,795 + +1.4 4,795 + +1.3 4,795 + +1.7 4,795 + +1.7 4,795 + +2.3 4,795 + +1.3 4,803 - +2.8 4,803 - +1.0 4,803 - +2.1 4,815 + +0.3 4,863 + +1.1
Or see this region's nucleotide sequence