Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22235

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
5,460,897	-		CA265_RS22225	0.33	+2.9
5,460,986	+		CA265_RS22225	0.49	-0.9
5,461,086	+		CA265_RS22225	0.67	-1.5
5,461,087	-		CA265_RS22225	0.68	+0.4
5,461,224	-				-1.6
5,461,224	-				-0.2
5,461,224	-				-1.3
5,461,232	+				-0.4
5,461,233	-				-0.7
5,461,323	+				+0.5
5,461,369	+		CA265_RS22230	0.17	-1.2
5,461,374	+		CA265_RS22230	0.18	-0.0
5,461,375	-		CA265_RS22230	0.18	+0.3
5,461,375	-		CA265_RS22230	0.18	-1.1
5,461,380	+		CA265_RS22230	0.19	+0.1
5,461,425	+		CA265_RS22230	0.27	-0.4
5,461,426	-		CA265_RS22230	0.27	+0.9
5,461,426	-		CA265_RS22230	0.27	-1.9
5,461,428	+		CA265_RS22230	0.27	-1.7
5,461,429	-		CA265_RS22230	0.28	-0.4
5,461,540	-		CA265_RS22230	0.46	+0.4
5,461,555	-		CA265_RS22230	0.49	-1.5
5,461,620	+		CA265_RS22230	0.60	+0.3
5,461,620	+		CA265_RS22230	0.60	-0.4
5,461,738	-		CA265_RS22230	0.80	-0.4
5,461,738	-		CA265_RS22230	0.80	-1.1
5,461,788	+		CA265_RS22230	0.89	-0.9
5,461,789	-		CA265_RS22230	0.89	+0.3
5,461,789	-		CA265_RS22230	0.89	+0.7
5,461,894	-				-1.5
5,461,894	-				-0.7
5,461,898	+				-0.2
5,461,899	-				-0.8
5,461,933	-				-0.3
5,461,933	-				+0.7
5,461,937	+				-1.6
5,461,951	-				-0.3
5,461,964	-				+0.0
5,461,981	-				-0.1
5,462,164	+		CA265_RS22235	0.17	-0.8
5,462,279	+		CA265_RS22235	0.23	+0.5
5,462,279	+		CA265_RS22235	0.23	-2.2
5,462,307	+		CA265_RS22235	0.24	+0.5
5,462,307	+		CA265_RS22235	0.24	-0.5
5,462,314	+		CA265_RS22235	0.25	-0.3
5,462,315	-				+2.7
5,462,315	-		CA265_RS22235	0.25	+0.1
5,462,315	-		CA265_RS22235	0.25	-0.4
5,462,386	+		CA265_RS22235	0.29	-0.2
5,462,477	-		CA265_RS22235	0.34	-1.4
5,462,477	-		CA265_RS22235	0.34	-1.0
5,462,518	+		CA265_RS22235	0.36	-1.5
5,462,597	+				-0.3
5,462,598	-		CA265_RS22235	0.41	+0.8
5,462,617	+		CA265_RS22235	0.42	-0.4
5,462,622	+		CA265_RS22235	0.42	-0.1
5,462,654	+		CA265_RS22235	0.44	-0.7
5,462,655	-		CA265_RS22235	0.44	+1.2
5,462,707	-		CA265_RS22235	0.47	-0.4
5,462,707	-		CA265_RS22235	0.47	-1.6
5,462,726	+		CA265_RS22235	0.48	-1.1
5,462,784	+		CA265_RS22235	0.51	-0.2
5,462,808	+		CA265_RS22235	0.52	+0.0
5,462,952	+		CA265_RS22235	0.60	-0.6
5,462,969	+		CA265_RS22235	0.61	-1.0
5,463,030	+		CA265_RS22235	0.65	-0.2
5,463,066	+		CA265_RS22235	0.67	-0.6
5,463,168	+		CA265_RS22235	0.72	-0.5
5,463,169	-		CA265_RS22235	0.72	-1.1
5,463,217	-		CA265_RS22235	0.75	-0.1
5,463,252	-		CA265_RS22235	0.77	-2.7
5,463,270	+		CA265_RS22235	0.78	+0.8
5,463,270	+		CA265_RS22235	0.78	-2.3
5,463,271	-		CA265_RS22235	0.78	-1.1
5,463,271	-		CA265_RS22235	0.78	-0.7
5,463,271	-		CA265_RS22235	0.78	-0.5
5,463,271	-		CA265_RS22235	0.78	-0.4
5,463,276	-		CA265_RS22235	0.78	-1.3
5,463,305	+		CA265_RS22235	0.80	-1.5
5,463,331	-		CA265_RS22235	0.81	-0.6
5,463,354	+		CA265_RS22235	0.83	+0.6
5,463,375	+		CA265_RS22235	0.84	-1.2
5,463,375	+		CA265_RS22235	0.84	-0.9
5,463,376	-		CA265_RS22235	0.84	-0.1
5,463,379	-		CA265_RS22235	0.84	-0.8
5,463,430	-		CA265_RS22235	0.87	+0.2
5,463,430	-		CA265_RS22235	0.87	-0.4
5,463,439	-		CA265_RS22235	0.87	-1.0
5,463,508	-				+2.1
5,463,540	-				-0.5
5,463,543	+				-0.3
5,463,543	+				-0.3
5,463,613	-				-0.6
5,463,625	-				-0.4
5,463,625	-				-0.4
5,463,753	+		CA265_RS22240	0.11	-1.3
5,463,761	+		CA265_RS22240	0.12	-1.9
5,463,762	-		CA265_RS22240	0.12	+0.4
5,463,765	+		CA265_RS22240	0.12	-4.0
5,463,765	+		CA265_RS22240	0.12	-1.9
5,463,766	-		CA265_RS22240	0.12	+0.6
5,463,768	+		CA265_RS22240	0.12	-0.5
5,463,819	+		CA265_RS22240	0.19	-2.5
5,463,820	-		CA265_RS22240	0.19	+0.1
5,463,882	-		CA265_RS22240	0.27	+0.6
5,463,900	-		CA265_RS22240	0.29	-0.3
5,463,905	+		CA265_RS22240	0.29	-3.5
5,463,927	+		CA265_RS22240	0.32	-2.4
5,463,931	+		CA265_RS22240	0.33	-2.1
5,463,932	-		CA265_RS22240	0.33	-1.1
5,463,932	-		CA265_RS22240	0.33	+0.1
5,463,957	+		CA265_RS22240	0.36	-3.4
5,463,957	+				-0.3
5,463,958	-		CA265_RS22240	0.36	-0.7
5,463,989	-		CA265_RS22240	0.40	+0.4
5,464,022	-		CA265_RS22240	0.44	-1.5
5,464,122	+		CA265_RS22240	0.56	-0.5
5,464,136	+		CA265_RS22240	0.58	-1.8
5,464,250	+		CA265_RS22240	0.72	-1.1
5,464,270	+		CA265_RS22240	0.75	-2.6
5,464,270	+		CA265_RS22240	0.75	-2.2
5,464,276	-		CA265_RS22240	0.76	-0.3
5,464,294	-		CA265_RS22240	0.78	-1.6
5,464,294	-		CA265_RS22240	0.78	+0.1
5,464,297	+		CA265_RS22240	0.78	-1.3
5,464,298	-		CA265_RS22240	0.78	-1.6
5,464,340	-		CA265_RS22240	0.84	-0.2
5,464,343	-		CA265_RS22240	0.84	+0.5
5,464,371	-		CA265_RS22240	0.87	-0.4
5,464,373	-		CA265_RS22240	0.88	-0.7
5,464,434	-				-1.3
5,464,446	+				+0.0
5,464,601	-				-0.4
5,464,648	+		CA265_RS22245	0.10	+1.7
5,464,658	-		CA265_RS22245	0.11	+1.0