Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21770

Experiment: R2A with Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21760 and CA265_RS21765 are separated by 55 nucleotidesCA265_RS21765 and CA265_RS21770 are separated by 234 nucleotidesCA265_RS21770 and CA265_RS21775 are separated by 149 nucleotides CA265_RS21760: CA265_RS21760 - hypothetical protein, at 5,347,741 to 5,348,133 _RS21760 CA265_RS21765: CA265_RS21765 - hypothetical protein, at 5,348,189 to 5,348,641 _RS21765 CA265_RS21770: CA265_RS21770 - ATP-dependent RNA helicase, at 5,348,876 to 5,350,048 _RS21770 CA265_RS21775: CA265_RS21775 - transporter, at 5,350,198 to 5,351,109 _RS21775 Position (kb) 5348 5349 5350 5351Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5347.901 kb on - strand, within CA265_RS21760at 5347.901 kb on - strand, within CA265_RS21760at 5347.939 kb on - strand, within CA265_RS21760at 5348.011 kb on - strand, within CA265_RS21760at 5348.011 kb on - strand, within CA265_RS21760at 5348.044 kb on + strand, within CA265_RS21760at 5348.066 kb on - strand, within CA265_RS21760at 5348.132 kb on - strandat 5348.132 kb on - strandat 5348.132 kb on - strandat 5348.132 kb on - strandat 5348.132 kb on - strandat 5348.164 kb on - strandat 5348.203 kb on + strandat 5348.290 kb on + strand, within CA265_RS21765at 5348.291 kb on - strand, within CA265_RS21765at 5348.299 kb on + strand, within CA265_RS21765at 5348.337 kb on + strand, within CA265_RS21765at 5348.337 kb on + strand, within CA265_RS21765at 5348.338 kb on - strand, within CA265_RS21765at 5348.410 kb on + strand, within CA265_RS21765at 5348.424 kb on + strand, within CA265_RS21765at 5348.424 kb on + strand, within CA265_RS21765at 5348.425 kb on - strand, within CA265_RS21765at 5348.425 kb on - strand, within CA265_RS21765at 5348.425 kb on - strand, within CA265_RS21765at 5348.490 kb on - strand, within CA265_RS21765at 5348.491 kb on + strand, within CA265_RS21765at 5348.492 kb on - strand, within CA265_RS21765at 5348.584 kb on + strand, within CA265_RS21765at 5348.653 kb on + strandat 5348.653 kb on + strandat 5348.722 kb on - strandat 5348.778 kb on + strandat 5348.797 kb on + strandat 5348.797 kb on + strandat 5348.836 kb on + strandat 5348.862 kb on + strandat 5348.938 kb on + strandat 5349.037 kb on + strand, within CA265_RS21770at 5349.037 kb on + strand, within CA265_RS21770at 5349.043 kb on + strand, within CA265_RS21770at 5349.044 kb on - strand, within CA265_RS21770at 5349.082 kb on + strand, within CA265_RS21770at 5349.097 kb on - strand, within CA265_RS21770at 5349.199 kb on - strand, within CA265_RS21770at 5349.208 kb on + strand, within CA265_RS21770at 5349.208 kb on + strand, within CA265_RS21770at 5349.240 kb on + strand, within CA265_RS21770at 5349.329 kb on - strand, within CA265_RS21770at 5349.332 kb on - strand, within CA265_RS21770at 5349.343 kb on + strand, within CA265_RS21770at 5349.344 kb on - strand, within CA265_RS21770at 5349.344 kb on - strand, within CA265_RS21770at 5349.410 kb on - strand, within CA265_RS21770at 5349.461 kb on - strand, within CA265_RS21770at 5349.477 kb on + strand, within CA265_RS21770at 5349.478 kb on - strand, within CA265_RS21770at 5349.552 kb on - strand, within CA265_RS21770at 5349.552 kb on - strand, within CA265_RS21770at 5349.553 kb on + strand, within CA265_RS21770at 5349.554 kb on - strand, within CA265_RS21770at 5349.554 kb on - strand, within CA265_RS21770at 5349.592 kb on - strand, within CA265_RS21770at 5349.600 kb on + strand, within CA265_RS21770at 5349.601 kb on - strand, within CA265_RS21770at 5349.677 kb on - strand, within CA265_RS21770at 5349.677 kb on - strand, within CA265_RS21770at 5349.730 kb on - strand, within CA265_RS21770at 5349.776 kb on + strand, within CA265_RS21770at 5349.777 kb on - strand, within CA265_RS21770at 5349.807 kb on + strand, within CA265_RS21770at 5349.807 kb on + strand, within CA265_RS21770at 5349.808 kb on - strand, within CA265_RS21770at 5349.854 kb on - strand, within CA265_RS21770at 5349.856 kb on + strand, within CA265_RS21770at 5349.857 kb on - strand, within CA265_RS21770at 5349.857 kb on - strand, within CA265_RS21770at 5349.906 kb on + strand, within CA265_RS21770at 5349.907 kb on - strand, within CA265_RS21770at 5349.948 kb on + strandat 5349.948 kb on + strandat 5349.949 kb on - strandat 5349.964 kb on + strandat 5349.994 kb on + strandat 5349.995 kb on - strandat 5350.064 kb on + strandat 5350.158 kb on + strandat 5350.159 kb on - strandat 5350.181 kb on - strandat 5350.192 kb on - strandat 5350.192 kb on - strandat 5350.192 kb on - strandat 5350.215 kb on + strandat 5350.302 kb on + strand, within CA265_RS21775at 5350.307 kb on - strand, within CA265_RS21775at 5350.350 kb on + strand, within CA265_RS21775at 5350.351 kb on - strand, within CA265_RS21775at 5350.367 kb on + strand, within CA265_RS21775at 5350.368 kb on - strand, within CA265_RS21775at 5350.430 kb on - strand, within CA265_RS21775at 5350.447 kb on - strand, within CA265_RS21775at 5350.453 kb on - strand, within CA265_RS21775at 5350.495 kb on - strand, within CA265_RS21775at 5350.508 kb on + strand, within CA265_RS21775at 5350.556 kb on + strand, within CA265_RS21775at 5350.557 kb on - strand, within CA265_RS21775at 5350.557 kb on - strand, within CA265_RS21775at 5350.725 kb on + strand, within CA265_RS21775at 5350.805 kb on + strand, within CA265_RS21775at 5350.864 kb on + strand, within CA265_RS21775at 5350.864 kb on + strand, within CA265_RS21775at 5350.914 kb on - strand, within CA265_RS21775at 5350.960 kb on - strand, within CA265_RS21775at 5350.971 kb on - strand, within CA265_RS21775at 5351.008 kb on - strand, within CA265_RS21775

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml
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5,347,901 - CA265_RS21760 0.41 -0.2
5,347,901 - CA265_RS21760 0.41 -2.6
5,347,939 - CA265_RS21760 0.50 -0.8
5,348,011 - CA265_RS21760 0.69 -0.7
5,348,011 - CA265_RS21760 0.69 -0.2
5,348,044 + CA265_RS21760 0.77 +0.6
5,348,066 - CA265_RS21760 0.83 -0.3
5,348,132 - +0.2
5,348,132 - -1.3
5,348,132 - +0.7
5,348,132 - -0.3
5,348,132 - -0.0
5,348,164 - -0.0
5,348,203 + +1.6
5,348,290 + CA265_RS21765 0.22 +1.6
5,348,291 - CA265_RS21765 0.23 -0.3
5,348,299 + CA265_RS21765 0.24 +1.4
5,348,337 + CA265_RS21765 0.33 +1.4
5,348,337 + CA265_RS21765 0.33 +0.1
5,348,338 - CA265_RS21765 0.33 +0.3
5,348,410 + CA265_RS21765 0.49 +1.7
5,348,424 + CA265_RS21765 0.52 +1.6
5,348,424 + CA265_RS21765 0.52 +1.4
5,348,425 - CA265_RS21765 0.52 -0.8
5,348,425 - CA265_RS21765 0.52 -0.7
5,348,425 - CA265_RS21765 0.52 -0.8
5,348,490 - CA265_RS21765 0.66 -1.9
5,348,491 + CA265_RS21765 0.67 +0.6
5,348,492 - CA265_RS21765 0.67 -0.7
5,348,584 + CA265_RS21765 0.87 +1.2
5,348,653 + -2.3
5,348,653 + -0.6
5,348,722 - +0.2
5,348,778 + -0.1
5,348,797 + -1.0
5,348,797 + -0.1
5,348,836 + +0.2
5,348,862 + -1.2
5,348,938 + -1.8
5,349,037 + CA265_RS21770 0.14 -0.4
5,349,037 + CA265_RS21770 0.14 +0.8
5,349,043 + CA265_RS21770 0.14 +0.0
5,349,044 - CA265_RS21770 0.14 -0.0
5,349,082 + CA265_RS21770 0.18 +0.8
5,349,097 - CA265_RS21770 0.19 +0.1
5,349,199 - CA265_RS21770 0.28 -0.8
5,349,208 + CA265_RS21770 0.28 -1.2
5,349,208 + CA265_RS21770 0.28 -1.8
5,349,240 + CA265_RS21770 0.31 +0.3
5,349,329 - CA265_RS21770 0.39 -0.1
5,349,332 - CA265_RS21770 0.39 +1.5
5,349,343 + CA265_RS21770 0.40 -0.2
5,349,344 - CA265_RS21770 0.40 -1.9
5,349,344 - CA265_RS21770 0.40 -0.2
5,349,410 - CA265_RS21770 0.46 -0.4
5,349,461 - CA265_RS21770 0.50 +0.0
5,349,477 + CA265_RS21770 0.51 -0.0
5,349,478 - CA265_RS21770 0.51 -0.4
5,349,552 - CA265_RS21770 0.58 +1.3
5,349,552 - CA265_RS21770 0.58 +0.8
5,349,553 + CA265_RS21770 0.58 -1.6
5,349,554 - CA265_RS21770 0.58 -1.4
5,349,554 - CA265_RS21770 0.58 +0.4
5,349,592 - CA265_RS21770 0.61 +0.1
5,349,600 + CA265_RS21770 0.62 +0.2
5,349,601 - CA265_RS21770 0.62 +0.5
5,349,677 - CA265_RS21770 0.68 +1.4
5,349,677 - CA265_RS21770 0.68 -1.3
5,349,730 - CA265_RS21770 0.73 -0.8
5,349,776 + CA265_RS21770 0.77 -1.8
5,349,777 - CA265_RS21770 0.77 +0.7
5,349,807 + CA265_RS21770 0.79 +0.7
5,349,807 + CA265_RS21770 0.79 +0.1
5,349,808 - CA265_RS21770 0.79 +0.2
5,349,854 - CA265_RS21770 0.83 +0.8
5,349,856 + CA265_RS21770 0.84 +1.0
5,349,857 - CA265_RS21770 0.84 +0.4
5,349,857 - CA265_RS21770 0.84 +1.0
5,349,906 + CA265_RS21770 0.88 -1.2
5,349,907 - CA265_RS21770 0.88 -0.1
5,349,948 + -0.6
5,349,948 + -0.7
5,349,949 - -2.5
5,349,964 + +0.8
5,349,994 + -0.2
5,349,995 - -0.0
5,350,064 + -0.3
5,350,158 + -0.5
5,350,159 - +0.2
5,350,181 - +0.1
5,350,192 - +1.1
5,350,192 - +0.8
5,350,192 - +1.3
5,350,215 + -1.4
5,350,302 + CA265_RS21775 0.11 -0.2
5,350,307 - CA265_RS21775 0.12 -0.3
5,350,350 + CA265_RS21775 0.17 +0.4
5,350,351 - CA265_RS21775 0.17 -0.1
5,350,367 + CA265_RS21775 0.19 +0.8
5,350,368 - CA265_RS21775 0.19 +0.5
5,350,430 - CA265_RS21775 0.25 +0.3
5,350,447 - CA265_RS21775 0.27 +0.4
5,350,453 - CA265_RS21775 0.28 -0.6
5,350,495 - CA265_RS21775 0.33 -1.0
5,350,508 + CA265_RS21775 0.34 +0.9
5,350,556 + CA265_RS21775 0.39 +0.8
5,350,557 - CA265_RS21775 0.39 +1.0
5,350,557 - CA265_RS21775 0.39 +1.3
5,350,725 + CA265_RS21775 0.58 +2.8
5,350,805 + CA265_RS21775 0.67 +4.1
5,350,864 + CA265_RS21775 0.73 -0.6
5,350,864 + CA265_RS21775 0.73 +0.6
5,350,914 - CA265_RS21775 0.79 +0.6
5,350,960 - CA265_RS21775 0.84 +0.4
5,350,971 - CA265_RS21775 0.85 +2.5
5,351,008 - CA265_RS21775 0.89 +1.3

Or see this region's nucleotide sequence