Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15975

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
4,009,960	+				+0.9
4,010,008	+		CA265_RS15970	0.17	+0.8
4,010,008	+		CA265_RS15970	0.17	+0.7
4,010,031	+		CA265_RS15970	0.23	+1.2
4,010,034	-		CA265_RS15970	0.24	+0.8
4,010,037	-		CA265_RS15970	0.25	+0.3
4,010,040	+		CA265_RS15970	0.25	-0.8
4,010,040	+		CA265_RS15970	0.25	+0.8
4,010,040	+		CA265_RS15970	0.25	+0.8
4,010,044	+		CA265_RS15970	0.27	+0.8
4,010,118	+		CA265_RS15970	0.46	-3.3
4,010,128	+		CA265_RS15970	0.49	-0.3
4,010,161	+		CA265_RS15970	0.57	+0.3
4,010,161	+		CA265_RS15970	0.57	-0.7
4,010,161	+		CA265_RS15970	0.57	+0.9
4,010,195	-		CA265_RS15970	0.66	+0.4
4,010,199	-		CA265_RS15970	0.67	+0.4
4,010,262	+		CA265_RS15970	0.84	-0.2
4,010,326	+				-0.1
4,010,327	-				+0.1
4,010,469	+				+1.0
4,010,469	+				+1.7
4,010,472	-				-0.2
4,010,490	+				+1.4
4,010,490	+				+1.3
4,010,491	-				+1.4
4,010,545	-				+0.8
4,010,551	+				-0.4
4,010,620	+				+0.4
4,010,632	+				-0.8
4,010,632	+				-0.1
4,010,676	+		CA265_RS15975	0.13	+1.1
4,010,758	+		CA265_RS15975	0.23	+3.4
4,010,758	+				+1.7
4,010,758	+		CA265_RS15975	0.23	-1.0
4,010,777	-		CA265_RS15975	0.25	+0.1
4,010,808	+		CA265_RS15975	0.29	+0.4
4,010,815	+		CA265_RS15975	0.30	+1.1
4,010,815	+		CA265_RS15975	0.30	+0.5
4,010,837	-		CA265_RS15975	0.32	+1.4
4,010,853	+		CA265_RS15975	0.34	+0.4
4,010,895	-		CA265_RS15975	0.39	-0.3
4,010,900	-		CA265_RS15975	0.40	+0.1
4,010,900	-		CA265_RS15975	0.40	-0.1
4,010,946	+		CA265_RS15975	0.45	-0.7
4,011,069	+		CA265_RS15975	0.60	-0.0
4,011,075	+		CA265_RS15975	0.61	+1.1
4,011,088	+		CA265_RS15975	0.63	+0.6
4,011,109	-		CA265_RS15975	0.65	+0.8
4,011,109	-		CA265_RS15975	0.65	-1.6
4,011,269	-		CA265_RS15975	0.84	+0.0
4,011,269	-		CA265_RS15975	0.84	+0.2
4,011,469	-				-0.6
4,011,472	+				-0.4
4,011,473	-				+0.1
4,011,493	-		CA265_RS15980	0.13	+0.1
4,011,493	-		CA265_RS15980	0.13	+0.7
4,011,514	+		CA265_RS15980	0.17	-0.1
4,011,697	+		CA265_RS15980	0.51	-0.3
4,011,719	-		CA265_RS15980	0.55	+0.3
4,011,729	-		CA265_RS15980	0.57	-0.3
4,011,798	+		CA265_RS15980	0.70	-0.1
4,011,808	+		CA265_RS15980	0.72	-0.0
4,011,851	-		CA265_RS15980	0.80	+0.1
4,011,851	-		CA265_RS15980	0.80	+0.3
4,011,855	+		CA265_RS15980	0.81	-1.0
4,011,931	-				+1.1
4,011,945	+				+0.2
4,012,123	+		CA265_RS15985	0.12	-1.5
4,012,124	-		CA265_RS15985	0.12	+1.4
4,012,163	-		CA265_RS15985	0.15	+1.1
4,012,163	-		CA265_RS15985	0.15	-0.5
4,012,183	+		CA265_RS15985	0.17	-0.4
4,012,195	-		CA265_RS15985	0.18	-0.2
4,012,195	-		CA265_RS15985	0.18	-0.6
4,012,229	+		CA265_RS15985	0.20	+0.6
4,012,229	+		CA265_RS15985	0.20	-1.3
4,012,230	-		CA265_RS15985	0.20	-1.1
4,012,307	+		CA265_RS15985	0.26	+0.1
4,012,371	+		CA265_RS15985	0.31	-0.9
4,012,371	+		CA265_RS15985	0.31	+1.2