Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12310

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
3,068,537	+		CA265_RS12305	0.56	+1.0
3,068,557	-		CA265_RS12305	0.57	-0.9
3,068,581	-		CA265_RS12305	0.58	-0.9
3,068,581	-		CA265_RS12305	0.58	-1.5
3,068,697	-		CA265_RS12305	0.63	-3.2
3,068,773	+		CA265_RS12305	0.67	-0.5
3,068,796	-		CA265_RS12305	0.68	-1.6
3,068,872	-		CA265_RS12305	0.71	-1.0
3,068,874	-		CA265_RS12305	0.71	-0.1
3,068,903	+		CA265_RS12305	0.73	-0.9
3,068,949	-		CA265_RS12305	0.75	-1.3
3,068,950	+		CA265_RS12305	0.75	-1.3
3,068,950	+		CA265_RS12305	0.75	-0.6
3,068,950	+		CA265_RS12305	0.75	-0.4
3,068,997	+		CA265_RS12305	0.77	-1.6
3,069,009	+		CA265_RS12305	0.77	+0.3
3,069,165	+		CA265_RS12305	0.84	-0.9
3,069,169	+		CA265_RS12305	0.85	-0.5
3,069,169	+		CA265_RS12305	0.85	+4.4
3,069,194	+		CA265_RS12305	0.86	-0.4
3,069,198	+		CA265_RS12305	0.86	+0.6
3,069,199	-		CA265_RS12305	0.86	-0.9
3,069,233	+		CA265_RS12305	0.88	-0.7
3,069,346	+				-0.4
3,069,433	+				-0.2
3,069,487	-				-0.6
3,069,633	+		CA265_RS12310	0.12	-2.2
3,069,637	+		CA265_RS12310	0.12	-0.1
3,069,637	+		CA265_RS12310	0.12	-0.8
3,069,644	+		CA265_RS12310	0.13	-0.6
3,069,644	+		CA265_RS12310	0.13	-1.2
3,069,645	-		CA265_RS12310	0.13	-1.1
3,069,715	+		CA265_RS12310	0.19	-0.6
3,069,719	+		CA265_RS12310	0.20	+0.1
3,069,720	-		CA265_RS12310	0.20	-0.9
3,069,747	-		CA265_RS12310	0.22	-0.8
3,069,761	+		CA265_RS12310	0.23	+0.1
3,069,792	+		CA265_RS12310	0.26	-0.2
3,069,828	+		CA265_RS12310	0.30	-0.6
3,069,829	-		CA265_RS12310	0.30	-1.5
3,069,830	+		CA265_RS12310	0.30	-1.0
3,069,830	+		CA265_RS12310	0.30	+0.1
3,069,831	-		CA265_RS12310	0.30	-1.8
3,069,831	-		CA265_RS12310	0.30	-0.6
3,069,831	-		CA265_RS12310	0.30	-0.1
3,069,843	+		CA265_RS12310	0.31	+0.2
3,069,844	-		CA265_RS12310	0.31	+0.4
3,069,844	-		CA265_RS12310	0.31	-1.1
3,069,889	+		CA265_RS12310	0.35	-0.1
3,069,890	-		CA265_RS12310	0.35	-1.4
3,069,948	+		CA265_RS12310	0.41	-1.2
3,069,981	-		CA265_RS12310	0.44	-1.8
3,069,982	+		CA265_RS12310	0.44	-1.9
3,070,012	+		CA265_RS12310	0.47	-1.6
3,070,015	+		CA265_RS12310	0.47	-1.0
3,070,017	+		CA265_RS12310	0.47	-1.6
3,070,017	+		CA265_RS12310	0.47	+0.6
3,070,017	+		CA265_RS12310	0.47	-0.9
3,070,018	-		CA265_RS12310	0.47	-0.5
3,070,018	-		CA265_RS12310	0.47	-0.3
3,070,108	+		CA265_RS12310	0.55	+0.6
3,070,145	-		CA265_RS12310	0.59	-0.9
3,070,150	+		CA265_RS12310	0.59	-1.1
3,070,243	+		CA265_RS12310	0.68	+1.5
3,070,319	+		CA265_RS12310	0.75	-1.0
3,070,323	+		CA265_RS12310	0.75	-4.2
3,070,324	-		CA265_RS12310	0.75	-0.5
3,070,324	-		CA265_RS12310	0.75	-0.3
3,070,380	+		CA265_RS12310	0.80	+0.2
3,070,381	-		CA265_RS12310	0.80	+1.1
3,070,531	-				-1.6
3,070,544	-				-0.8
3,070,706	+				-0.6
3,070,754	-				-1.6
3,070,755	+				+0.4
3,070,755	+				+0.1
3,070,786	+				+0.3
3,070,786	+				+0.8
3,070,822	-				+0.0
3,070,843	+				+0.0
3,070,867	+		CA265_RS12315	0.12	+0.5
3,070,911	+		CA265_RS12315	0.17	+0.1
3,070,911	+		CA265_RS12315	0.17	-1.3
3,070,912	-		CA265_RS12315	0.17	-0.2
3,070,933	+		CA265_RS12315	0.19	+0.4
3,070,985	-		CA265_RS12315	0.25	-1.4
3,070,985	-		CA265_RS12315	0.25	-2.1
3,070,998	+		CA265_RS12315	0.26	-0.2
3,071,007	-		CA265_RS12315	0.27	-1.2
3,071,059	+		CA265_RS12315	0.33	-0.6
3,071,222	+		CA265_RS12315	0.50	-1.3
3,071,248	+		CA265_RS12315	0.53	-0.2
3,071,303	+				+1.9
3,071,320	-		CA265_RS12315	0.61	-0.7
3,071,367	+		CA265_RS12315	0.66	+0.3
3,071,368	-		CA265_RS12315	0.66	-0.8
3,071,370	-		CA265_RS12315	0.66	+0.2
3,071,370	-		CA265_RS12315	0.66	-0.5
3,071,396	-		CA265_RS12315	0.69	-2.4
3,071,402	-		CA265_RS12315	0.70	-0.5
3,071,434	+		CA265_RS12315	0.73	-0.5
3,071,434	+		CA265_RS12315	0.73	+0.3
3,071,435	-		CA265_RS12315	0.73	-1.9
3,071,474	-		CA265_RS12315	0.77	-0.8
3,071,528	+		CA265_RS12315	0.83	-0.4