Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11660

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
2,888,895	+				+0.8
2,888,895	+				+0.7
2,888,897	+				-0.8
2,888,897	+				+0.4
2,888,898	-				+0.5
2,888,898	-				-0.3
2,888,898	-				-0.7
2,888,955	+				-0.1
2,888,969	+				-1.1
2,888,972	-				+1.6
2,888,972	-				-0.7
2,888,972	-				+1.5
2,888,993	+				+0.7
2,889,006	+				-0.1
2,889,012	+				-0.4
2,889,012	+				-0.2
2,889,023	+				-0.4
2,889,027	+				-0.9
2,889,036	+				-1.3
2,889,036	+				+0.3
2,889,136	+		CA265_RS11655	0.11	+0.9
2,889,136	+		CA265_RS11655	0.11	-0.5
2,889,137	-		CA265_RS11655	0.12	+0.4
2,889,140	-		CA265_RS11655	0.12	-0.0
2,889,140	-		CA265_RS11655	0.12	-0.7
2,889,199	+		CA265_RS11655	0.20	+0.6
2,889,200	-		CA265_RS11655	0.20	-0.6
2,889,220	+		CA265_RS11655	0.23	-0.7
2,889,220	+		CA265_RS11655	0.23	+0.7
2,889,273	+		CA265_RS11655	0.30	-0.1
2,889,273	+		CA265_RS11655	0.30	+0.3
2,889,274	-		CA265_RS11655	0.30	+0.1
2,889,295	+		CA265_RS11655	0.33	+1.1
2,889,302	+		CA265_RS11655	0.33	-1.2
2,889,379	+		CA265_RS11655	0.44	-1.3
2,889,500	-		CA265_RS11655	0.60	-0.3
2,889,653	+		CA265_RS11655	0.80	-0.8
2,889,656	-		CA265_RS11655	0.80	-0.0
2,889,656	-		CA265_RS11655	0.80	-1.1
2,889,662	-		CA265_RS11655	0.81	-0.6
2,889,668	-		CA265_RS11655	0.82	-1.3
2,889,679	-		CA265_RS11655	0.84	-1.9
2,889,706	-		CA265_RS11655	0.87	-2.5
2,889,731	-				-3.7
2,889,848	+				+1.1
2,889,876	+				+0.5
2,889,881	+				-0.1
2,889,930	-				+0.9
2,890,174	-		CA265_RS11660	0.16	-1.4
2,890,188	+		CA265_RS11660	0.17	-0.0
2,890,188	+		CA265_RS11660	0.17	+0.0
2,890,189	-		CA265_RS11660	0.17	+0.7
2,890,189	-		CA265_RS11660	0.17	-1.0
2,890,189	-		CA265_RS11660	0.17	+0.5
2,890,189	-		CA265_RS11660	0.17	-1.3
2,890,196	+		CA265_RS11660	0.17	-2.3
2,890,255	-		CA265_RS11660	0.19	+0.6
2,890,255	-		CA265_RS11660	0.19	-0.1
2,890,267	+		CA265_RS11660	0.20	-1.3
2,890,274	+		CA265_RS11660	0.20	+0.1
2,890,331	+		CA265_RS11660	0.23	-0.3
2,890,331	+		CA265_RS11660	0.23	+0.0
2,890,331	+		CA265_RS11660	0.23	+0.0
2,890,333	+		CA265_RS11660	0.23	+0.1
2,890,334	-		CA265_RS11660	0.23	-1.6
2,890,334	-		CA265_RS11660	0.23	+0.3
2,890,334	-		CA265_RS11660	0.23	+1.3
2,890,334	-		CA265_RS11660	0.23	+0.7
2,890,371	+		CA265_RS11660	0.24	-0.7
2,890,389	-		CA265_RS11660	0.25	-0.3
2,890,456	-		CA265_RS11660	0.28	-1.0
2,890,463	+		CA265_RS11660	0.28	-0.1
2,890,470	-		CA265_RS11660	0.29	-0.5
2,890,485	-		CA265_RS11660	0.29	-0.2
2,890,489	-		CA265_RS11660	0.30	+1.1
2,890,489	-		CA265_RS11660	0.30	+0.4
2,890,489	-		CA265_RS11660	0.30	-1.2
2,890,560	+		CA265_RS11660	0.33	-0.2
2,890,583	+		CA265_RS11660	0.34	+0.4
2,890,589	+		CA265_RS11660	0.34	+0.2
2,890,589	+		CA265_RS11660	0.34	+0.1
2,890,653	-		CA265_RS11660	0.37	-0.4
2,890,668	+		CA265_RS11660	0.37	-0.4
2,890,875	+		CA265_RS11660	0.46	-0.7
2,890,876	-		CA265_RS11660	0.46	+0.6
2,890,964	+		CA265_RS11660	0.50	-0.2
2,890,973	+		CA265_RS11660	0.50	-0.8
2,890,975	+		CA265_RS11660	0.51	-0.7
2,890,975	+		CA265_RS11660	0.51	-0.5
2,890,976	-		CA265_RS11660	0.51	-0.3
2,890,987	+		CA265_RS11660	0.51	+1.3
2,891,024	-		CA265_RS11660	0.53	-1.3
2,891,025	+		CA265_RS11660	0.53	-0.1
2,891,026	-		CA265_RS11660	0.53	+0.1
2,891,026	-		CA265_RS11660	0.53	+2.0
2,891,091	+		CA265_RS11660	0.56	+0.0
2,891,106	+		CA265_RS11660	0.56	+0.1
2,891,110	-		CA265_RS11660	0.56	-0.9
2,891,163	+		CA265_RS11660	0.59	+0.1
2,891,177	-		CA265_RS11660	0.59	+0.4
2,891,187	-		CA265_RS11660	0.60	-1.0
2,891,264	-		CA265_RS11660	0.63	-0.4
2,891,344	+		CA265_RS11660	0.66	-0.3
2,891,344	+		CA265_RS11660	0.66	+0.5
2,891,345	-		CA265_RS11660	0.67	-0.7
2,891,348	-		CA265_RS11660	0.67	+1.1
2,891,352	+		CA265_RS11660	0.67	-0.0
2,891,422	+		CA265_RS11660	0.70	+0.3
2,891,444	-		CA265_RS11660	0.71	-0.7
2,891,454	+		CA265_RS11660	0.71	+0.3
2,891,466	-		CA265_RS11660	0.72	+1.1
2,891,466	-		CA265_RS11660	0.72	+1.1
2,891,509	+		CA265_RS11660	0.74	+0.7
2,891,510	-		CA265_RS11660	0.74	+0.5
2,891,510	-		CA265_RS11660	0.74	-0.6
2,891,510	-		CA265_RS11660	0.74	+0.3
2,891,510	-		CA265_RS11660	0.74	-0.0
2,891,558	+		CA265_RS11660	0.76	+1.0
2,891,565	-		CA265_RS11660	0.76	+0.8
2,891,567	-		CA265_RS11660	0.76	+1.2
2,891,567	-		CA265_RS11660	0.76	+0.5
2,891,567	-		CA265_RS11660	0.76	+1.5
2,891,634	+		CA265_RS11660	0.79	+0.8
2,891,647	+		CA265_RS11660	0.80	-0.0
2,891,647	+		CA265_RS11660	0.80	+1.4
2,891,658	-		CA265_RS11660	0.80	+1.7
2,891,666	-		CA265_RS11660	0.80	+0.3
2,891,667	+		CA265_RS11660	0.80	+0.7
2,891,668	-		CA265_RS11660	0.80	+0.3
2,891,686	+		CA265_RS11660	0.81	+0.9
2,891,687	-		CA265_RS11660	0.81	-1.8
2,891,687	-		CA265_RS11660	0.81	-1.1
2,891,703	-		CA265_RS11660	0.82	-0.4
2,891,786	-		CA265_RS11660	0.86	+1.3
2,891,790	+		CA265_RS11660	0.86	+1.2
2,891,790	+		CA265_RS11660	0.86	-0.1
2,891,791	-		CA265_RS11660	0.86	+1.4
2,891,803	+		CA265_RS11660	0.86	+0.5
2,891,862	-		CA265_RS11660	0.89	+1.0
2,891,869	+		CA265_RS11660	0.89	-0.8
2,891,883	-		CA265_RS11660	0.90	-1.1
2,892,142	-				-0.8
2,892,207	-				+0.9
2,892,214	-				-0.3
2,892,269	-				-0.5
2,892,342	-				-0.3