Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11560

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
2,866,531	-		CA265_RS11555	0.34	+0.1
2,866,539	+		CA265_RS11555	0.35	+1.1
2,866,540	-		CA265_RS11555	0.35	-0.5
2,866,558	-		CA265_RS11555	0.36	+1.1
2,866,572	+		CA265_RS11555	0.37	-0.9
2,866,604	+		CA265_RS11555	0.39	-0.9
2,866,604	+		CA265_RS11555	0.39	+0.2
2,866,644	-		CA265_RS11555	0.42	-0.6
2,866,646	+		CA265_RS11555	0.42	-0.5
2,866,650	+		CA265_RS11555	0.42	+0.4
2,866,650	+		CA265_RS11555	0.42	-0.5
2,866,654	-		CA265_RS11555	0.43	-0.6
2,866,693	+		CA265_RS11555	0.45	-0.1
2,866,716	+		CA265_RS11555	0.47	+0.0
2,866,717	-		CA265_RS11555	0.47	-0.7
2,866,727	+		CA265_RS11555	0.47	-0.6
2,866,728	-		CA265_RS11555	0.47	+0.2
2,866,811	+		CA265_RS11555	0.53	+0.2
2,866,871	+		CA265_RS11555	0.57	+0.3
2,866,892	-		CA265_RS11555	0.58	-1.4
2,866,914	+		CA265_RS11555	0.60	+0.3
2,866,926	+		CA265_RS11555	0.61	+0.7
2,866,945	+		CA265_RS11555	0.62	-0.3
2,866,954	+		CA265_RS11555	0.62	+0.0
2,866,954	+		CA265_RS11555	0.62	-0.6
2,866,955	-		CA265_RS11555	0.63	-0.2
2,867,065	+		CA265_RS11555	0.70	-0.3
2,867,100	+		CA265_RS11555	0.72	-1.3
2,867,101	-		CA265_RS11555	0.72	-0.3
2,867,102	+		CA265_RS11555	0.72	+1.1
2,867,102	+		CA265_RS11555	0.72	+1.4
2,867,103	-		CA265_RS11555	0.72	+0.9
2,867,103	-		CA265_RS11555	0.72	+0.8
2,867,189	-		CA265_RS11555	0.78	+0.7
2,867,189	-		CA265_RS11555	0.78	-1.9
2,867,206	+		CA265_RS11555	0.79	-0.6
2,867,206	+		CA265_RS11555	0.79	+0.0
2,867,206	+		CA265_RS11555	0.79	+0.1
2,867,295	+				-0.1
2,867,297	+		CA265_RS11555	0.85	-0.8
2,867,298	-		CA265_RS11555	0.85	+0.2
2,867,298	-		CA265_RS11555	0.85	+0.7
2,867,372	+				-0.6
2,867,372	+				+0.4
2,867,372	+				-1.0
2,867,373	-				+0.5
2,867,373	-				-0.1
2,867,418	-				-0.7
2,867,430	+				+0.6
2,867,449	+				+0.4
2,867,536	+				+1.3
2,867,639	-				-0.6
2,867,688	+				+0.0
2,867,889	+		CA265_RS11560	0.12	-0.4
2,867,918	+		CA265_RS11560	0.13	-0.0
2,867,919	-		CA265_RS11560	0.13	-0.1
2,867,919	-		CA265_RS11560	0.13	-1.3
2,867,923	-		CA265_RS11560	0.13	-1.0
2,867,970	+		CA265_RS11560	0.14	+0.2
2,867,970	+		CA265_RS11560	0.14	+1.2
2,867,972	+		CA265_RS11560	0.15	+0.3
2,868,042	+		CA265_RS11560	0.17	+0.9
2,868,074	+		CA265_RS11560	0.18	-0.4
2,868,213	+		CA265_RS11560	0.22	-0.3
2,868,218	+		CA265_RS11560	0.22	-0.0
2,868,282	-		CA265_RS11560	0.25	-0.5
2,868,380	-		CA265_RS11560	0.28	-0.4
2,868,380	-		CA265_RS11560	0.28	+1.5
2,868,478	+		CA265_RS11560	0.31	+1.1
2,868,513	+		CA265_RS11560	0.32	-1.1
2,868,519	+		CA265_RS11560	0.32	-0.1
2,868,602	-		CA265_RS11560	0.35	+0.3
2,868,614	-		CA265_RS11560	0.35	-0.7
2,868,619	+		CA265_RS11560	0.35	-1.7
2,868,639	+		CA265_RS11560	0.36	-0.4
2,868,640	-		CA265_RS11560	0.36	+0.2
2,868,640	-		CA265_RS11560	0.36	+0.3
2,868,661	+		CA265_RS11560	0.37	-0.1
2,868,670	-		CA265_RS11560	0.37	-0.5
2,868,815	+		CA265_RS11560	0.42	+0.9
2,868,815	+		CA265_RS11560	0.42	+0.2
2,868,815	+		CA265_RS11560	0.42	-2.0
2,868,816	-		CA265_RS11560	0.42	-0.1
2,868,848	-		CA265_RS11560	0.43	+0.4
2,868,937	-		CA265_RS11560	0.46	-1.0
2,869,028	-		CA265_RS11560	0.49	+0.8
2,869,045	-		CA265_RS11560	0.49	+0.1
2,869,048	-		CA265_RS11560	0.49	-0.5
2,869,048	-		CA265_RS11560	0.49	+0.5
2,869,111	+		CA265_RS11560	0.51	+0.8
2,869,132	+		CA265_RS11560	0.52	+0.8
2,869,137	+		CA265_RS11560	0.52	-1.2
2,869,174	+		CA265_RS11560	0.53	+1.0
2,869,175	-		CA265_RS11560	0.53	+0.3
2,869,187	-		CA265_RS11560	0.54	-1.6
2,869,210	-		CA265_RS11560	0.55	-0.9
2,869,266	+		CA265_RS11560	0.56	-0.1
2,869,296	+		CA265_RS11560	0.57	-0.5
2,869,347	+		CA265_RS11560	0.59	-0.5
2,869,347	+		CA265_RS11560	0.59	+0.4
2,869,436	+		CA265_RS11560	0.62	-0.7
2,869,437	-		CA265_RS11560	0.62	-0.8
2,869,449	+		CA265_RS11560	0.62	+0.6
2,869,464	+				+1.9
2,869,465	-		CA265_RS11560	0.63	+0.3
2,869,516	-		CA265_RS11560	0.65	-0.4
2,869,533	-		CA265_RS11560	0.65	+0.4
2,869,573	+		CA265_RS11560	0.66	+0.5
2,869,577	+		CA265_RS11560	0.67	+0.5
2,869,577	+		CA265_RS11560	0.67	-0.0
2,869,623	+		CA265_RS11560	0.68	+0.4
2,869,623	+		CA265_RS11560	0.68	+1.4
2,869,624	-		CA265_RS11560	0.68	+0.7
2,869,693	-		CA265_RS11560	0.70	+0.6
2,869,788	+		CA265_RS11560	0.73	+0.5
2,869,788	+		CA265_RS11560	0.73	-1.3
2,869,788	+		CA265_RS11560	0.73	+0.4
2,869,791	-		CA265_RS11560	0.73	+0.7
2,869,848	-		CA265_RS11560	0.75	-0.2
2,869,854	+		CA265_RS11560	0.75	+1.3
2,869,855	-		CA265_RS11560	0.76	+0.5
2,869,857	-		CA265_RS11560	0.76	+0.3
2,869,890	+		CA265_RS11560	0.77	+1.1
2,869,978	-		CA265_RS11560	0.79	-0.1
2,869,989	+		CA265_RS11560	0.80	+0.3
2,870,128	+		CA265_RS11560	0.84	+1.7
2,870,129	-		CA265_RS11560	0.84	-2.9
2,870,157	+		CA265_RS11560	0.85	-2.1
2,870,158	-		CA265_RS11560	0.85	+0.7
2,870,188	+		CA265_RS11560	0.86	+0.4
2,870,188	+		CA265_RS11560	0.86	+3.8
2,870,240	-		CA265_RS11560	0.88	-0.0
2,870,265	+		CA265_RS11560	0.89	-0.2
2,870,268	-		CA265_RS11560	0.89	-0.5
2,870,275	+				+1.9
2,870,284	+		CA265_RS11560	0.89	+1.0
2,870,378	-				-0.1
2,870,422	-				-0.2
2,870,505	+				+1.0
2,870,506	-				-1.3
2,870,567	-				-0.3
2,870,587	+				+0.1
2,870,638	+				+0.3
2,870,779	+				+0.7
2,870,825	-				-1.0
2,870,900	+				+1.3
2,871,005	-				+0.1
2,871,095	-				+1.9
2,871,255	+				-1.0
2,871,291	-				+0.3
2,871,342	-		CA265_RS11565	0.14	-1.7
2,871,343	+		CA265_RS11565	0.14	-1.2
2,871,343	+		CA265_RS11565	0.14	-0.2
2,871,343	+		CA265_RS11565	0.14	+0.1
2,871,344	-		CA265_RS11565	0.15	+0.2
2,871,438	-		CA265_RS11565	0.27	+0.6
2,871,446	+		CA265_RS11565	0.28	-0.7
2,871,524	+		CA265_RS11565	0.38	-0.4
2,871,572	-		CA265_RS11565	0.44	+0.6
2,871,572	-		CA265_RS11565	0.44	+0.4
2,871,591	-		CA265_RS11565	0.46	-0.2
2,871,604	-		CA265_RS11565	0.48	+0.3