Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10225

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
2,512,873	+		CA265_RS10220	0.32	-2.8
2,512,873	+		CA265_RS10220	0.32	-1.4
2,512,874	-		CA265_RS10220	0.32	-0.1
2,512,926	-		CA265_RS10220	0.36	-0.2
2,512,981	+		CA265_RS10220	0.40	+0.1
2,513,209	+		CA265_RS10220	0.56	-0.0
2,513,269	+		CA265_RS10220	0.60	+0.3
2,513,270	-		CA265_RS10220	0.60	+0.3
2,513,296	+		CA265_RS10220	0.62	+0.0
2,513,316	-		CA265_RS10220	0.64	+0.9
2,513,371	-		CA265_RS10220	0.68	+0.6
2,513,451	-		CA265_RS10220	0.74	+0.9
2,513,458	+		CA265_RS10220	0.74	-0.3
2,513,458	+		CA265_RS10220	0.74	+0.2
2,513,459	-		CA265_RS10220	0.74	+0.4
2,513,459	-		CA265_RS10220	0.74	+0.4
2,513,461	-		CA265_RS10220	0.74	-0.3
2,513,481	+		CA265_RS10220	0.76	-1.7
2,513,481	+		CA265_RS10220	0.76	+1.6
2,513,482	-		CA265_RS10220	0.76	+0.1
2,513,482	-		CA265_RS10220	0.76	-1.3
2,513,482	-		CA265_RS10220	0.76	+0.6
2,513,522	-		CA265_RS10220	0.79	+0.5
2,513,524	-		CA265_RS10220	0.79	+1.3
2,513,585	-		CA265_RS10220	0.83	-0.8
2,513,631	+		CA265_RS10220	0.86	+0.5
2,513,632	-		CA265_RS10220	0.87	+0.9
2,513,639	-		CA265_RS10220	0.87	+0.2
2,513,695	-				-0.7
2,513,695	-				-1.3
2,513,745	-				-0.2
2,513,793	-				+1.0
2,513,798	-				+0.2
2,513,820	-				-0.3
2,513,874	-				+0.9
2,514,018	+		CA265_RS10225	0.11	-0.3
2,514,045	+		CA265_RS10225	0.13	+0.8
2,514,049	+		CA265_RS10225	0.13	-0.9
2,514,093	-		CA265_RS10225	0.16	+1.0
2,514,108	-		CA265_RS10225	0.17	+0.9
2,514,166	-		CA265_RS10225	0.21	-0.4
2,514,177	+		CA265_RS10225	0.22	+0.1
2,514,252	+		CA265_RS10225	0.28	+0.4
2,514,252	+		CA265_RS10225	0.28	+0.5
2,514,297	+		CA265_RS10225	0.31	-0.2
2,514,343	-		CA265_RS10225	0.34	+1.1
2,514,410	+		CA265_RS10225	0.39	-1.9
2,514,415	+		CA265_RS10225	0.40	+1.6
2,514,455	+		CA265_RS10225	0.43	-1.2
2,514,456	-		CA265_RS10225	0.43	+0.5
2,514,456	-		CA265_RS10225	0.43	-0.1
2,514,494	+		CA265_RS10225	0.45	-1.1
2,514,564	+		CA265_RS10225	0.50	+0.4
2,514,565	-		CA265_RS10225	0.51	+1.6
2,514,616	-		CA265_RS10225	0.54	+1.1
2,514,676	+		CA265_RS10225	0.59	-0.7
2,514,685	+		CA265_RS10225	0.59	+0.2
2,514,753	+		CA265_RS10225	0.64	-0.3
2,514,753	+		CA265_RS10225	0.64	+0.8
2,514,833	+		CA265_RS10225	0.70	+0.6
2,514,847	-		CA265_RS10225	0.71	+0.2
2,514,857	-		CA265_RS10225	0.72	+1.1
2,514,862	+		CA265_RS10225	0.72	+0.9
2,514,863	-		CA265_RS10225	0.72	+1.7
2,514,869	-		CA265_RS10225	0.73	+0.8
2,514,878	+		CA265_RS10225	0.73	+0.1
2,514,879	-		CA265_RS10225	0.73	+0.8
2,514,894	+		CA265_RS10225	0.75	-0.5
2,514,900	+		CA265_RS10225	0.75	+0.3
2,514,900	+		CA265_RS10225	0.75	-0.7
2,514,901	-		CA265_RS10225	0.75	-0.0
2,514,901	-		CA265_RS10225	0.75	-0.4
2,514,915	+		CA265_RS10225	0.76	+0.2
2,514,916	-		CA265_RS10225	0.76	+0.8
2,514,963	+		CA265_RS10225	0.80	+0.8
2,514,969	-		CA265_RS10225	0.80	+3.0
2,514,993	-		CA265_RS10225	0.82	-2.6
2,514,993	-		CA265_RS10225	0.82	-0.1
2,515,041	+		CA265_RS10225	0.85	+0.4
2,515,074	-		CA265_RS10225	0.88	-0.3
2,515,098	+		CA265_RS10225	0.89	+0.4
2,515,098	+		CA265_RS10225	0.89	-0.3
2,515,123	-				+0.3
2,515,140	+				-1.1
2,515,146	+				-0.5
2,515,179	+				-0.2
2,515,179	+				-0.2
2,515,217	-				+1.3
2,515,264	+				-0.0
2,515,265	-				+0.7
2,515,327	+				-1.0
2,515,348	-				-0.5
2,515,359	-				+0.2
2,515,399	+		CA265_RS10230	0.10	+1.0
2,515,399	+		CA265_RS10230	0.10	+1.3
2,515,399	+		CA265_RS10230	0.10	-1.0
2,515,400	-		CA265_RS10230	0.11	+0.5
2,515,443	+		CA265_RS10230	0.14	-0.3
2,515,444	-		CA265_RS10230	0.14	+0.4
2,515,465	+		CA265_RS10230	0.15	-0.4
2,515,465	+		CA265_RS10230	0.15	-0.2
2,515,503	+		CA265_RS10230	0.18	-0.1
2,515,516	-		CA265_RS10230	0.19	+0.2
2,515,556	+		CA265_RS10230	0.21	+0.7
2,515,610	+		CA265_RS10230	0.25	-1.6
2,515,632	-		CA265_RS10230	0.27	+0.5
2,515,704	+		CA265_RS10230	0.32	-0.0
2,515,707	-		CA265_RS10230	0.32	-0.9
2,515,719	+		CA265_RS10230	0.33	+0.4
2,515,742	+		CA265_RS10230	0.34	-1.0
2,515,753	-		CA265_RS10230	0.35	+0.4
2,515,760	-		CA265_RS10230	0.36	+0.2
2,515,795	-		CA265_RS10230	0.38	+0.2
2,515,817	+		CA265_RS10230	0.40	+0.7
2,515,861	+		CA265_RS10230	0.43	-1.2
2,515,861	+		CA265_RS10230	0.43	+0.7
2,515,862	-		CA265_RS10230	0.43	+0.9
2,515,862	-		CA265_RS10230	0.43	+1.1
2,515,957	+		CA265_RS10230	0.49	+0.4
2,515,958	-		CA265_RS10230	0.49	+0.1
2,515,958	-		CA265_RS10230	0.49	+0.6
2,515,984	-		CA265_RS10230	0.51	+0.5
2,515,987	+		CA265_RS10230	0.51	+0.2
2,515,987	+		CA265_RS10230	0.51	+0.1
2,516,113	+		CA265_RS10230	0.60	-0.0
2,516,114	-		CA265_RS10230	0.60	-0.5
2,516,124	+		CA265_RS10230	0.61	+1.7
2,516,151	-		CA265_RS10230	0.63	+0.5
2,516,151	-		CA265_RS10230	0.63	+0.2
2,516,169	+		CA265_RS10230	0.64	+0.5
2,516,179	-		CA265_RS10230	0.65	+1.3
2,516,235	+		CA265_RS10230	0.69	-0.6