Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04180

Experiment: R2A with Sisomicin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.008 mg/ml
1,008,552	-				-0.1
1,008,565	-				-0.2
1,008,608	+				-1.9
1,008,803	-		CA265_RS04175	0.26	-0.1
1,009,008	+		CA265_RS04175	0.56	-0.7
1,009,067	+		CA265_RS04175	0.64	+0.1
1,009,138	-		CA265_RS04175	0.74	+0.3
1,009,150	-		CA265_RS04175	0.76	-0.0
1,009,157	+		CA265_RS04175	0.77	-2.0
1,009,157	+		CA265_RS04175	0.77	-2.1
1,009,158	-		CA265_RS04175	0.77	+0.7
1,009,179	-		CA265_RS04175	0.80	-0.4
1,009,312	-				-0.3
1,009,316	-				+0.6
1,009,412	+				-3.3
1,009,413	-				+0.3
1,009,413	-				-0.7
1,009,413	-				-0.4
1,009,419	+				+0.3
1,009,471	-				+0.7
1,009,502	+				-3.1
1,009,535	-				-0.1
1,009,535	-				+1.4
1,009,648	-				+0.4
1,009,651	-				+0.4
1,009,652	+				+0.3
1,009,662	-				+0.5
1,009,699	+				-3.5
1,009,738	+				-2.9
1,009,807	+		CA265_RS04180	0.11	-1.0
1,009,807	+		CA265_RS04180	0.11	-0.1
1,009,829	+		CA265_RS04180	0.12	-2.3
1,009,830	-		CA265_RS04180	0.12	+0.1
1,009,830	-		CA265_RS04180	0.12	+0.1
1,009,874	-		CA265_RS04180	0.14	+0.1
1,009,911	+		CA265_RS04180	0.16	-1.8
1,009,962	+		CA265_RS04180	0.18	-1.6
1,009,966	+		CA265_RS04180	0.18	-1.1
1,009,966	+		CA265_RS04180	0.18	-1.4
1,009,966	+		CA265_RS04180	0.18	-1.3
1,010,026	-		CA265_RS04180	0.21	+0.7
1,010,058	+		CA265_RS04180	0.22	-0.8
1,010,059	-		CA265_RS04180	0.22	-0.9
1,010,077	-		CA265_RS04180	0.23	-1.4
1,010,095	+		CA265_RS04180	0.24	-1.5
1,010,096	-		CA265_RS04180	0.24	+0.1
1,010,116	+		CA265_RS04180	0.25	-3.9
1,010,116	+		CA265_RS04180	0.25	-1.8
1,010,116	+		CA265_RS04180	0.25	-0.9
1,010,117	-		CA265_RS04180	0.25	+0.9
1,010,117	-		CA265_RS04180	0.25	-1.6
1,010,117	-		CA265_RS04180	0.25	-0.1
1,010,119	+		CA265_RS04180	0.25	-4.1
1,010,179	+		CA265_RS04180	0.27	+0.1
1,010,205	+		CA265_RS04180	0.28	-0.3
1,010,251	+		CA265_RS04180	0.30	-0.7
1,010,251	+		CA265_RS04180	0.30	-1.3
1,010,252	-		CA265_RS04180	0.30	-1.1
1,010,406	+		CA265_RS04180	0.37	-1.9
1,010,512	+		CA265_RS04180	0.41	-0.2
1,010,574	+		CA265_RS04180	0.44	-0.7
1,010,590	-		CA265_RS04180	0.45	+0.4
1,010,698	+		CA265_RS04180	0.49	-1.4
1,010,714	+		CA265_RS04180	0.50	-0.5
1,010,715	-		CA265_RS04180	0.50	+1.2
1,010,718	+		CA265_RS04180	0.50	-1.3
1,010,863	+		CA265_RS04180	0.56	-1.6
1,010,922	+		CA265_RS04180	0.59	-1.2
1,010,923	-		CA265_RS04180	0.59	-0.4
1,010,923	-		CA265_RS04180	0.59	-0.5
1,010,952	+		CA265_RS04180	0.60	-2.1
1,010,974	+		CA265_RS04180	0.61	+0.0
1,010,975	-		CA265_RS04180	0.61	-1.3
1,010,975	-		CA265_RS04180	0.61	+0.9
1,011,040	+		CA265_RS04180	0.64	-1.0
1,011,040	+		CA265_RS04180	0.64	-2.0
1,011,040	+		CA265_RS04180	0.64	-3.2
1,011,040	+		CA265_RS04180	0.64	-1.6
1,011,105	+		CA265_RS04180	0.66	+0.4
1,011,105	+		CA265_RS04180	0.66	-1.6
1,011,106	-		CA265_RS04180	0.66	-0.6
1,011,106	-		CA265_RS04180	0.66	+1.2
1,011,106	-		CA265_RS04180	0.66	-0.6
1,011,142	-		CA265_RS04180	0.68	-1.2
1,011,145	-		CA265_RS04180	0.68	+0.6
1,011,192	+		CA265_RS04180	0.70	-1.4
1,011,192	+		CA265_RS04180	0.70	-1.7
1,011,274	-		CA265_RS04180	0.73	-0.0
1,011,277	+		CA265_RS04180	0.74	-2.6
1,011,277	+		CA265_RS04180	0.74	-2.5
1,011,278	-		CA265_RS04180	0.74	-1.4
1,011,287	-		CA265_RS04180	0.74	-1.5
1,011,291	+		CA265_RS04180	0.74	-1.6
1,011,436	-		CA265_RS04180	0.80	-0.3
1,011,436	-		CA265_RS04180	0.80	-0.9
1,011,454	+		CA265_RS04180	0.81	-0.6
1,011,454	+		CA265_RS04180	0.81	+0.6
1,011,454	+		CA265_RS04180	0.81	-1.3
1,011,526	+		CA265_RS04180	0.84	-3.0
1,011,629	-		CA265_RS04180	0.88	+1.2
1,011,662	-		CA265_RS04180	0.90	+0.5
1,011,680	-				-0.3
1,011,715	+				-2.1
1,011,716	-				-0.2
1,011,734	+				-0.7
1,011,745	-				-1.0
1,011,835	-				-0.1
1,011,881	-				-0.3
1,011,955	+				+1.5
1,011,961	-				+0.4
1,011,981	+				+0.6
1,011,981	+				-2.7
1,011,981	+				-0.3
1,011,982	-				+1.6
1,011,982	-				-1.2
1,012,084	-				+1.1
1,012,093	-				+1.2
1,012,099	+				-1.0
1,012,104	+				-0.8
1,012,109	-				-1.0
1,012,109	-				-1.9
1,012,142	-				+2.3
1,012,142	-				-0.4
1,012,242	-		CA265_RS04185	0.11	-0.7
1,012,297	-		CA265_RS04185	0.13	-0.6
1,012,317	+		CA265_RS04185	0.14	-2.0
1,012,318	-		CA265_RS04185	0.14	+0.9
1,012,336	+		CA265_RS04185	0.15	-1.4
1,012,395	+		CA265_RS04185	0.17	-0.9
1,012,503	+		CA265_RS04185	0.22	-0.8
1,012,504	-		CA265_RS04185	0.22	+1.5
1,012,506	-		CA265_RS04185	0.22	+0.7
1,012,527	+		CA265_RS04185	0.23	-0.6
1,012,548	+		CA265_RS04185	0.24	+0.5
1,012,610	-		CA265_RS04185	0.26	+0.3
1,012,611	+		CA265_RS04185	0.26	-0.1
1,012,618	+		CA265_RS04185	0.27	-0.8
1,012,620	+		CA265_RS04185	0.27	-1.0
1,012,621	-		CA265_RS04185	0.27	-0.1
1,012,623	+		CA265_RS04185	0.27	-0.2
1,012,624	-		CA265_RS04185	0.27	+0.3
1,012,624	-		CA265_RS04185	0.27	+0.7
1,012,628	-		CA265_RS04185	0.27	-0.2
1,012,688	-		CA265_RS04185	0.30	+0.2
1,012,811	-		CA265_RS04185	0.35	+2.6
1,012,842	+				+0.3
1,012,847	+		CA265_RS04185	0.36	+0.2
1,012,848	-		CA265_RS04185	0.36	+0.5
1,012,888	-		CA265_RS04185	0.38	+0.5
1,012,890	-		CA265_RS04185	0.38	+0.1