Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03980

Experiment: R2A with Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03975 and CA265_RS03980 are separated by 20 nucleotidesCA265_RS03980 and CA265_RS03985 are separated by 16 nucleotides CA265_RS03975: CA265_RS03975 - hypothetical protein, at 947,873 to 949,546 _RS03975 CA265_RS03980: CA265_RS03980 - hypothetical protein, at 949,567 to 951,315 _RS03980 CA265_RS03985: CA265_RS03985 - hypothetical protein, at 951,332 to 953,290 _RS03985 Position (kb) 949 950 951 952Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 948.568 kb on + strand, within CA265_RS03975at 948.590 kb on - strand, within CA265_RS03975at 948.613 kb on - strand, within CA265_RS03975at 948.652 kb on + strand, within CA265_RS03975at 948.673 kb on + strand, within CA265_RS03975at 948.674 kb on - strand, within CA265_RS03975at 948.674 kb on - strand, within CA265_RS03975at 948.794 kb on - strand, within CA265_RS03975at 948.794 kb on - strand, within CA265_RS03975at 948.799 kb on + strand, within CA265_RS03975at 948.799 kb on + strand, within CA265_RS03975at 948.800 kb on - strand, within CA265_RS03975at 948.803 kb on - strand, within CA265_RS03975at 948.818 kb on + strand, within CA265_RS03975at 948.889 kb on + strand, within CA265_RS03975at 948.898 kb on + strand, within CA265_RS03975at 948.899 kb on - strand, within CA265_RS03975at 948.899 kb on - strand, within CA265_RS03975at 948.920 kb on + strand, within CA265_RS03975at 948.970 kb on - strand, within CA265_RS03975at 948.976 kb on + strand, within CA265_RS03975at 949.035 kb on + strand, within CA265_RS03975at 949.036 kb on - strand, within CA265_RS03975at 949.036 kb on - strandat 949.036 kb on - strand, within CA265_RS03975at 949.066 kb on - strand, within CA265_RS03975at 949.066 kb on - strand, within CA265_RS03975at 949.077 kb on + strand, within CA265_RS03975at 949.117 kb on + strand, within CA265_RS03975at 949.117 kb on + strand, within CA265_RS03975at 949.142 kb on - strand, within CA265_RS03975at 949.142 kb on - strand, within CA265_RS03975at 949.232 kb on - strand, within CA265_RS03975at 949.241 kb on - strand, within CA265_RS03975at 949.241 kb on - strand, within CA265_RS03975at 949.273 kb on - strand, within CA265_RS03975at 949.273 kb on - strand, within CA265_RS03975at 949.277 kb on - strand, within CA265_RS03975at 949.294 kb on + strand, within CA265_RS03975at 949.365 kb on + strand, within CA265_RS03975at 949.400 kb on - strandat 949.400 kb on - strandat 949.423 kb on + strandat 949.486 kb on + strandat 949.510 kb on - strandat 949.566 kb on - strandat 949.566 kb on - strandat 949.593 kb on - strandat 949.596 kb on + strandat 949.638 kb on + strandat 949.645 kb on - strandat 949.738 kb on + strandat 949.739 kb on - strandat 949.739 kb on - strandat 949.739 kb on - strandat 949.803 kb on + strand, within CA265_RS03980at 949.820 kb on + strand, within CA265_RS03980at 949.821 kb on - strand, within CA265_RS03980at 949.825 kb on - strand, within CA265_RS03980at 949.884 kb on + strand, within CA265_RS03980at 949.884 kb on + strand, within CA265_RS03980at 949.887 kb on + strand, within CA265_RS03980at 949.887 kb on + strand, within CA265_RS03980at 949.926 kb on + strand, within CA265_RS03980at 950.111 kb on + strand, within CA265_RS03980at 950.120 kb on + strand, within CA265_RS03980at 950.121 kb on - strand, within CA265_RS03980at 950.130 kb on + strand, within CA265_RS03980at 950.213 kb on - strand, within CA265_RS03980at 950.242 kb on + strand, within CA265_RS03980at 950.242 kb on + strand, within CA265_RS03980at 950.243 kb on - strand, within CA265_RS03980at 950.268 kb on - strand, within CA265_RS03980at 950.319 kb on + strand, within CA265_RS03980at 950.319 kb on + strand, within CA265_RS03980at 950.359 kb on - strand, within CA265_RS03980at 950.386 kb on - strand, within CA265_RS03980at 950.389 kb on + strand, within CA265_RS03980at 950.389 kb on + strand, within CA265_RS03980at 950.401 kb on + strand, within CA265_RS03980at 950.492 kb on + strand, within CA265_RS03980at 950.493 kb on - strand, within CA265_RS03980at 950.529 kb on + strand, within CA265_RS03980at 950.530 kb on - strand, within CA265_RS03980at 950.559 kb on + strand, within CA265_RS03980at 950.605 kb on + strand, within CA265_RS03980at 950.605 kb on + strand, within CA265_RS03980at 950.605 kb on + strand, within CA265_RS03980at 950.606 kb on - strand, within CA265_RS03980at 950.606 kb on - strand, within CA265_RS03980at 950.635 kb on + strand, within CA265_RS03980at 950.635 kb on + strand, within CA265_RS03980at 950.635 kb on + strand, within CA265_RS03980at 950.637 kb on + strand, within CA265_RS03980at 950.655 kb on - strand, within CA265_RS03980at 950.675 kb on + strand, within CA265_RS03980at 950.696 kb on - strand, within CA265_RS03980at 950.785 kb on - strand, within CA265_RS03980at 950.799 kb on - strand, within CA265_RS03980at 950.847 kb on + strand, within CA265_RS03980at 950.848 kb on - strand, within CA265_RS03980at 950.883 kb on - strand, within CA265_RS03980at 950.949 kb on + strand, within CA265_RS03980at 950.950 kb on - strand, within CA265_RS03980at 950.954 kb on - strand, within CA265_RS03980at 950.954 kb on - strand, within CA265_RS03980at 950.959 kb on - strand, within CA265_RS03980at 950.959 kb on - strand, within CA265_RS03980at 951.063 kb on + strand, within CA265_RS03980at 951.063 kb on + strand, within CA265_RS03980at 951.074 kb on + strand, within CA265_RS03980at 951.136 kb on + strand, within CA265_RS03980at 951.137 kb on - strand, within CA265_RS03980at 951.161 kb on + strandat 951.162 kb on - strandat 951.162 kb on - strandat 951.171 kb on + strandat 951.213 kb on + strandat 951.230 kb on - strandat 951.230 kb on - strandat 951.240 kb on - strandat 951.243 kb on + strandat 951.251 kb on + strandat 951.297 kb on - strandat 951.309 kb on + strandat 951.310 kb on - strandat 951.487 kb on + strandat 951.487 kb on + strandat 951.488 kb on - strandat 951.493 kb on + strandat 951.502 kb on + strandat 951.636 kb on - strand, within CA265_RS03985at 951.636 kb on - strand, within CA265_RS03985at 951.637 kb on + strand, within CA265_RS03985at 951.638 kb on - strand, within CA265_RS03985at 951.638 kb on - strand, within CA265_RS03985at 951.640 kb on + strand, within CA265_RS03985at 951.650 kb on + strand, within CA265_RS03985at 951.681 kb on + strand, within CA265_RS03985at 951.696 kb on + strand, within CA265_RS03985at 951.705 kb on + strand, within CA265_RS03985at 951.712 kb on - strand, within CA265_RS03985at 951.728 kb on - strand, within CA265_RS03985at 951.790 kb on - strand, within CA265_RS03985at 951.835 kb on + strand, within CA265_RS03985at 951.836 kb on - strand, within CA265_RS03985at 951.838 kb on - strand, within CA265_RS03985at 951.838 kb on - strand, within CA265_RS03985at 951.842 kb on - strand, within CA265_RS03985at 951.842 kb on - strandat 951.842 kb on - strand, within CA265_RS03985at 951.844 kb on - strand, within CA265_RS03985at 951.886 kb on + strand, within CA265_RS03985at 951.955 kb on - strand, within CA265_RS03985at 952.021 kb on + strand, within CA265_RS03985at 952.021 kb on + strand, within CA265_RS03985at 952.039 kb on + strand, within CA265_RS03985at 952.040 kb on - strand, within CA265_RS03985at 952.072 kb on - strand, within CA265_RS03985at 952.159 kb on + strand, within CA265_RS03985at 952.188 kb on + strand, within CA265_RS03985at 952.188 kb on + strand, within CA265_RS03985at 952.189 kb on - strand, within CA265_RS03985at 952.200 kb on + strand, within CA265_RS03985at 952.240 kb on + strand, within CA265_RS03985at 952.270 kb on + strand, within CA265_RS03985at 952.270 kb on + strand, within CA265_RS03985

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml
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948,568 + CA265_RS03975 0.42 +0.3
948,590 - CA265_RS03975 0.43 -1.3
948,613 - CA265_RS03975 0.44 +0.8
948,652 + CA265_RS03975 0.47 -1.5
948,673 + CA265_RS03975 0.48 -1.6
948,674 - CA265_RS03975 0.48 -0.5
948,674 - CA265_RS03975 0.48 -0.8
948,794 - CA265_RS03975 0.55 +0.1
948,794 - CA265_RS03975 0.55 -0.4
948,799 + CA265_RS03975 0.55 +0.6
948,799 + CA265_RS03975 0.55 -0.7
948,800 - CA265_RS03975 0.55 +0.0
948,803 - CA265_RS03975 0.56 -0.1
948,818 + CA265_RS03975 0.56 -0.2
948,889 + CA265_RS03975 0.61 -0.8
948,898 + CA265_RS03975 0.61 -1.2
948,899 - CA265_RS03975 0.61 +0.4
948,899 - CA265_RS03975 0.61 -1.6
948,920 + CA265_RS03975 0.63 -0.4
948,970 - CA265_RS03975 0.66 +0.9
948,976 + CA265_RS03975 0.66 +0.0
949,035 + CA265_RS03975 0.69 -1.6
949,036 - CA265_RS03975 0.69 -0.8
949,036 - +0.3
949,036 - CA265_RS03975 0.69 -0.8
949,066 - CA265_RS03975 0.71 -0.8
949,066 - CA265_RS03975 0.71 -0.7
949,077 + CA265_RS03975 0.72 -1.5
949,117 + CA265_RS03975 0.74 -0.2
949,117 + CA265_RS03975 0.74 +0.5
949,142 - CA265_RS03975 0.76 -0.6
949,142 - CA265_RS03975 0.76 -0.4
949,232 - CA265_RS03975 0.81 -0.9
949,241 - CA265_RS03975 0.82 +0.2
949,241 - CA265_RS03975 0.82 -0.9
949,273 - CA265_RS03975 0.84 -0.2
949,273 - CA265_RS03975 0.84 -1.6
949,277 - CA265_RS03975 0.84 +0.4
949,294 + CA265_RS03975 0.85 +0.1
949,365 + CA265_RS03975 0.89 -0.2
949,400 - -0.3
949,400 - -0.9
949,423 + -1.5
949,486 + -1.0
949,510 - -2.5
949,566 - +0.3
949,566 - +0.2
949,593 - +0.8
949,596 + -1.2
949,638 + +0.4
949,645 - -1.5
949,738 + +1.9
949,739 - -1.0
949,739 - -0.6
949,739 - -0.3
949,803 + CA265_RS03980 0.13 -0.2
949,820 + CA265_RS03980 0.14 +0.7
949,821 - CA265_RS03980 0.15 +0.2
949,825 - CA265_RS03980 0.15 -1.3
949,884 + CA265_RS03980 0.18 -2.0
949,884 + CA265_RS03980 0.18 +0.4
949,887 + CA265_RS03980 0.18 +0.1
949,887 + CA265_RS03980 0.18 -0.8
949,926 + CA265_RS03980 0.21 -0.2
950,111 + CA265_RS03980 0.31 -1.0
950,120 + CA265_RS03980 0.32 +0.8
950,121 - CA265_RS03980 0.32 -0.8
950,130 + CA265_RS03980 0.32 -0.6
950,213 - CA265_RS03980 0.37 -0.1
950,242 + CA265_RS03980 0.39 +0.2
950,242 + CA265_RS03980 0.39 -0.0
950,243 - CA265_RS03980 0.39 -3.2
950,268 - CA265_RS03980 0.40 +2.0
950,319 + CA265_RS03980 0.43 -1.2
950,319 + CA265_RS03980 0.43 +0.2
950,359 - CA265_RS03980 0.45 +0.9
950,386 - CA265_RS03980 0.47 +1.1
950,389 + CA265_RS03980 0.47 -0.6
950,389 + CA265_RS03980 0.47 -0.5
950,401 + CA265_RS03980 0.48 +0.6
950,492 + CA265_RS03980 0.53 +1.5
950,493 - CA265_RS03980 0.53 +0.6
950,529 + CA265_RS03980 0.55 +0.5
950,530 - CA265_RS03980 0.55 -0.2
950,559 + CA265_RS03980 0.57 +0.6
950,605 + CA265_RS03980 0.59 -0.4
950,605 + CA265_RS03980 0.59 -0.4
950,605 + CA265_RS03980 0.59 -1.5
950,606 - CA265_RS03980 0.59 +0.8
950,606 - CA265_RS03980 0.59 +0.4
950,635 + CA265_RS03980 0.61 +0.3
950,635 + CA265_RS03980 0.61 -1.3
950,635 + CA265_RS03980 0.61 +0.0
950,637 + CA265_RS03980 0.61 -1.6
950,655 - CA265_RS03980 0.62 -0.1
950,675 + CA265_RS03980 0.63 -0.7
950,696 - CA265_RS03980 0.65 +0.5
950,785 - CA265_RS03980 0.70 -0.7
950,799 - CA265_RS03980 0.70 -0.3
950,847 + CA265_RS03980 0.73 +0.9
950,848 - CA265_RS03980 0.73 -0.8
950,883 - CA265_RS03980 0.75 -0.7
950,949 + CA265_RS03980 0.79 -1.6
950,950 - CA265_RS03980 0.79 -0.1
950,954 - CA265_RS03980 0.79 -0.5
950,954 - CA265_RS03980 0.79 +1.4
950,959 - CA265_RS03980 0.80 -1.4
950,959 - CA265_RS03980 0.80 -2.3
951,063 + CA265_RS03980 0.86 -1.9
951,063 + CA265_RS03980 0.86 -0.8
951,074 + CA265_RS03980 0.86 -1.1
951,136 + CA265_RS03980 0.90 -0.2
951,137 - CA265_RS03980 0.90 +0.9
951,161 + -0.8
951,162 - -0.1
951,162 - +1.1
951,171 + +1.2
951,213 + -3.1
951,230 - +0.0
951,230 - -0.1
951,240 - -2.4
951,243 + -0.5
951,251 + -0.7
951,297 - -0.5
951,309 + -0.4
951,310 - +0.5
951,487 + -1.0
951,487 + +1.0
951,488 - +1.0
951,493 + -0.2
951,502 + +1.3
951,636 - CA265_RS03985 0.16 -0.9
951,636 - CA265_RS03985 0.16 +0.4
951,637 + CA265_RS03985 0.16 +1.1
951,638 - CA265_RS03985 0.16 +0.4
951,638 - CA265_RS03985 0.16 -1.3
951,640 + CA265_RS03985 0.16 -0.6
951,650 + CA265_RS03985 0.16 +0.3
951,681 + CA265_RS03985 0.18 +2.0
951,696 + CA265_RS03985 0.19 -1.8
951,705 + CA265_RS03985 0.19 -1.3
951,712 - CA265_RS03985 0.19 -0.7
951,728 - CA265_RS03985 0.20 -0.5
951,790 - CA265_RS03985 0.23 +0.4
951,835 + CA265_RS03985 0.26 -0.5
951,836 - CA265_RS03985 0.26 -0.5
951,838 - CA265_RS03985 0.26 +0.3
951,838 - CA265_RS03985 0.26 +0.2
951,842 - CA265_RS03985 0.26 -0.7
951,842 - +1.9
951,842 - CA265_RS03985 0.26 -1.4
951,844 - CA265_RS03985 0.26 +0.1
951,886 + CA265_RS03985 0.28 -0.2
951,955 - CA265_RS03985 0.32 +0.3
952,021 + CA265_RS03985 0.35 -0.0
952,021 + CA265_RS03985 0.35 -1.4
952,039 + CA265_RS03985 0.36 -0.6
952,040 - CA265_RS03985 0.36 -0.0
952,072 - CA265_RS03985 0.38 -0.6
952,159 + CA265_RS03985 0.42 -0.2
952,188 + CA265_RS03985 0.44 -0.7
952,188 + CA265_RS03985 0.44 +1.5
952,189 - CA265_RS03985 0.44 -0.6
952,200 + CA265_RS03985 0.44 +0.5
952,240 + CA265_RS03985 0.46 -0.0
952,270 + CA265_RS03985 0.48 -0.9
952,270 + CA265_RS03985 0.48 +0.3

Or see this region's nucleotide sequence