Experiment: R2A with Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03285 and CA265_RS03290 are separated by 246 nucleotides CA265_RS03290 and CA265_RS03295 overlap by 1 nucleotides
CA265_RS03285: CA265_RS03285 - hypothetical protein, at 802,630 to 803,361
_RS03285
CA265_RS03290: CA265_RS03290 - gliding motility-associated ABC transporter permease subunit GldF, at 803,608 to 804,333
_RS03290
CA265_RS03295: CA265_RS03295 - gliding motility-associated ABC transporter substrate-binding protein GldG, at 804,333 to 806,018
_RS03295
Position (kb) 803
804
805 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 802.672 kb on - strand at 802.688 kb on + strand at 802.692 kb on - strand at 802.763 kb on + strand, within CA265_RS03285 at 802.820 kb on - strand, within CA265_RS03285 at 802.822 kb on - strand, within CA265_RS03285 at 802.836 kb on + strand, within CA265_RS03285 at 802.866 kb on + strand, within CA265_RS03285 at 802.883 kb on + strand, within CA265_RS03285 at 802.904 kb on + strand, within CA265_RS03285 at 802.904 kb on + strand, within CA265_RS03285 at 802.972 kb on - strand, within CA265_RS03285 at 802.978 kb on - strand, within CA265_RS03285 at 803.006 kb on - strand, within CA265_RS03285 at 803.080 kb on + strand, within CA265_RS03285 at 803.097 kb on - strand, within CA265_RS03285 at 803.126 kb on + strand, within CA265_RS03285 at 803.127 kb on - strand, within CA265_RS03285 at 803.127 kb on - strand, within CA265_RS03285 at 803.143 kb on - strand, within CA265_RS03285 at 803.143 kb on - strand, within CA265_RS03285 at 803.187 kb on + strand, within CA265_RS03285 at 803.237 kb on + strand, within CA265_RS03285 at 803.238 kb on - strand, within CA265_RS03285 at 803.238 kb on - strand, within CA265_RS03285 at 803.274 kb on - strand, within CA265_RS03285 at 803.294 kb on - strand at 803.319 kb on - strand at 803.333 kb on + strand at 803.334 kb on - strand at 803.379 kb on + strand at 803.380 kb on - strand at 803.388 kb on - strand at 803.388 kb on - strand at 803.390 kb on - strand at 803.392 kb on + strand at 803.395 kb on - strand at 803.395 kb on - strand at 803.454 kb on + strand at 803.455 kb on - strand at 803.458 kb on + strand at 803.458 kb on + strand at 803.459 kb on - strand at 803.491 kb on - strand at 803.491 kb on - strand at 803.495 kb on - strand at 803.496 kb on + strand at 803.499 kb on + strand at 803.577 kb on + strand at 803.578 kb on - strand at 803.599 kb on + strand at 803.600 kb on - strand at 803.611 kb on + strand at 803.663 kb on - strand at 803.665 kb on - strand at 803.730 kb on - strand, within CA265_RS03290 at 803.730 kb on - strand, within CA265_RS03290 at 803.738 kb on - strand, within CA265_RS03290 at 803.738 kb on - strand, within CA265_RS03290 at 803.848 kb on + strand, within CA265_RS03290 at 803.849 kb on - strand, within CA265_RS03290 at 803.858 kb on + strand, within CA265_RS03290 at 803.927 kb on + strand, within CA265_RS03290 at 803.928 kb on - strand, within CA265_RS03290 at 803.937 kb on - strand, within CA265_RS03290 at 803.953 kb on + strand, within CA265_RS03290 at 803.959 kb on + strand, within CA265_RS03290 at 804.155 kb on - strand, within CA265_RS03290 at 804.224 kb on - strand, within CA265_RS03290 at 804.224 kb on - strand, within CA265_RS03290 at 804.249 kb on - strand, within CA265_RS03290 at 804.265 kb on - strand at 804.268 kb on + strand at 804.317 kb on + strand at 804.371 kb on + strand at 804.449 kb on + strand at 804.449 kb on + strand at 804.507 kb on - strand, within CA265_RS03295 at 804.609 kb on - strand, within CA265_RS03295 at 804.692 kb on - strand, within CA265_RS03295 at 804.837 kb on - strand, within CA265_RS03295 at 804.837 kb on - strand, within CA265_RS03295 at 804.839 kb on - strand, within CA265_RS03295 at 804.867 kb on - strand, within CA265_RS03295 at 804.892 kb on + strand, within CA265_RS03295 at 804.906 kb on - strand, within CA265_RS03295 at 804.915 kb on - strand, within CA265_RS03295 at 804.991 kb on - strand, within CA265_RS03295 at 805.017 kb on - strand, within CA265_RS03295 at 805.020 kb on - strand, within CA265_RS03295 at 805.020 kb on - strand, within CA265_RS03295 at 805.083 kb on - strand, within CA265_RS03295 at 805.157 kb on - strand, within CA265_RS03295 at 805.157 kb on - strand, within CA265_RS03295 at 805.157 kb on - strand, within CA265_RS03295 at 805.212 kb on - strand, within CA265_RS03295 at 805.229 kb on + strand, within CA265_RS03295 at 805.230 kb on - strand, within CA265_RS03295 at 805.243 kb on - strand, within CA265_RS03295 at 805.257 kb on - strand, within CA265_RS03295 at 805.260 kb on + strand, within CA265_RS03295 at 805.315 kb on + strand, within CA265_RS03295 at 805.316 kb on - strand, within CA265_RS03295
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.008 mg/ml remove 802,672 - +0.0 802,688 + +0.4 802,692 - +0.4 802,763 + CA265_RS03285 0.18 +2.0 802,820 - CA265_RS03285 0.26 +0.2 802,822 - CA265_RS03285 0.26 -0.4 802,836 + CA265_RS03285 0.28 -0.1 802,866 + CA265_RS03285 0.32 +0.5 802,883 + CA265_RS03285 0.35 -0.2 802,904 + CA265_RS03285 0.37 +1.3 802,904 + CA265_RS03285 0.37 +0.9 802,972 - CA265_RS03285 0.47 +0.2 802,978 - CA265_RS03285 0.48 -1.5 803,006 - CA265_RS03285 0.51 -0.6 803,080 + CA265_RS03285 0.61 +0.8 803,097 - CA265_RS03285 0.64 -0.7 803,126 + CA265_RS03285 0.68 +1.0 803,127 - CA265_RS03285 0.68 -0.5 803,127 - CA265_RS03285 0.68 -0.3 803,143 - CA265_RS03285 0.70 -0.4 803,143 - CA265_RS03285 0.70 -0.8 803,187 + CA265_RS03285 0.76 -0.3 803,237 + CA265_RS03285 0.83 -0.9 803,238 - CA265_RS03285 0.83 -1.8 803,238 - CA265_RS03285 0.83 -0.6 803,274 - CA265_RS03285 0.88 -0.5 803,294 - -0.7 803,319 - -3.8 803,333 + +0.4 803,334 - +0.0 803,379 + +0.4 803,380 - -0.7 803,388 - -0.4 803,388 - -0.3 803,390 - -1.4 803,392 + -0.7 803,395 - -1.7 803,395 - +0.1 803,454 + -1.1 803,455 - -0.6 803,458 + -0.8 803,458 + -0.5 803,459 - -0.1 803,491 - -0.0 803,491 - +0.8 803,495 - -0.0 803,496 + -0.4 803,499 + -0.7 803,577 + -0.5 803,578 - +2.1 803,599 + +0.5 803,600 - +0.7 803,611 + +1.2 803,663 - +2.3 803,665 - +1.5 803,730 - CA265_RS03290 0.17 +1.3 803,730 - CA265_RS03290 0.17 +1.8 803,738 - CA265_RS03290 0.18 +1.0 803,738 - CA265_RS03290 0.18 +1.3 803,848 + CA265_RS03290 0.33 +1.2 803,849 - CA265_RS03290 0.33 +0.2 803,858 + CA265_RS03290 0.34 +0.7 803,927 + CA265_RS03290 0.44 +1.3 803,928 - CA265_RS03290 0.44 +0.6 803,937 - CA265_RS03290 0.45 +1.9 803,953 + CA265_RS03290 0.48 +1.3 803,959 + CA265_RS03290 0.48 +1.5 804,155 - CA265_RS03290 0.75 +2.1 804,224 - CA265_RS03290 0.85 +2.2 804,224 - CA265_RS03290 0.85 +1.6 804,249 - CA265_RS03290 0.88 +2.0 804,265 - +1.8 804,268 + +1.1 804,317 + +0.0 804,371 + +1.9 804,449 + +2.0 804,449 + +1.2 804,507 - CA265_RS03295 0.10 +1.7 804,609 - CA265_RS03295 0.16 -0.0 804,692 - CA265_RS03295 0.21 +0.8 804,837 - CA265_RS03295 0.30 -0.2 804,837 - CA265_RS03295 0.30 +0.8 804,839 - CA265_RS03295 0.30 +2.0 804,867 - CA265_RS03295 0.32 +1.7 804,892 + CA265_RS03295 0.33 +2.8 804,906 - CA265_RS03295 0.34 +2.1 804,915 - CA265_RS03295 0.35 +2.0 804,991 - CA265_RS03295 0.39 +2.1 805,017 - CA265_RS03295 0.41 -0.0 805,020 - CA265_RS03295 0.41 +0.8 805,020 - CA265_RS03295 0.41 +0.7 805,083 - CA265_RS03295 0.44 +1.2 805,157 - CA265_RS03295 0.49 +1.7 805,157 - CA265_RS03295 0.49 +1.3 805,157 - CA265_RS03295 0.49 +1.6 805,212 - CA265_RS03295 0.52 +0.3 805,229 + CA265_RS03295 0.53 +1.9 805,230 - CA265_RS03295 0.53 +1.4 805,243 - CA265_RS03295 0.54 +1.0 805,257 - CA265_RS03295 0.55 +1.2 805,260 + CA265_RS03295 0.55 +0.4 805,315 + CA265_RS03295 0.58 +2.0 805,316 - CA265_RS03295 0.58 +0.6
Or see this region's nucleotide sequence